Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46797 * 299.99727 * 3 2 1 6 6 H 1.48503 * 109.47242 * 59.99441 * 3 2 1 7 7 C 1.37882 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99597 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.46704 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99888 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00133 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00246 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99876 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46831 * 185.37913 * 14 13 11 16 16 H 1.09003 * 109.47296 * 185.90197 * 15 14 13 17 17 C 1.50704 * 109.46881 * 65.90742 * 15 14 13 18 18 C 1.33381 * 125.20410 * 100.00128 * 17 15 14 19 19 C 1.38423 * 114.91967 * 179.97438 * 18 17 15 20 20 C 1.33386 * 114.92433 * 359.97438 * 19 18 17 21 21 S 1.75885 * 109.59128 * 359.75885 * 20 19 18 22 22 N 1.46897 * 109.47341 * 305.90327 * 15 14 13 23 23 C 1.47015 * 111.00070 * 182.41414 * 22 15 14 24 24 C 1.53100 * 109.29324 * 182.37089 * 23 22 15 25 25 O 1.43025 * 109.25540 * 303.22662 * 24 23 22 26 26 C 1.43009 * 113.78053 * 58.59992 * 25 24 23 27 27 C 1.47008 * 111.00059 * 306.05543 * 22 15 14 28 28 H 0.96998 * 120.00163 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46977 * 59.99974 * 9 7 2 30 30 H 1.08996 * 109.47143 * 299.99476 * 9 7 2 31 31 H 0.97006 * 120.00520 * 0.02562 * 10 9 7 32 32 H 0.96993 * 119.99875 * 359.97438 * 13 11 10 33 33 H 1.09003 * 109.47269 * 65.38179 * 14 13 11 34 34 H 1.09002 * 109.47192 * 305.37654 * 14 13 11 35 35 H 1.08003 * 122.54231 * 359.95272 * 18 17 15 36 36 H 1.07999 * 122.53977 * 180.02562 * 19 18 17 37 37 H 1.08003 * 125.20613 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.50937 * 302.33133 * 23 22 15 39 39 H 1.09005 * 109.49955 * 62.42050 * 23 22 15 40 40 H 1.09000 * 109.50611 * 63.10978 * 24 23 22 41 41 H 1.08993 * 109.50628 * 183.24197 * 24 23 22 42 42 H 1.08998 * 109.51189 * 181.41963 * 26 25 24 43 43 H 1.09003 * 109.54372 * 61.31099 * 26 25 24 44 44 H 1.09000 * 109.50857 * 297.54060 * 27 22 15 45 45 H 1.09008 * 109.51063 * 57.62759 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6297 -5.9077 0.0005 14 6 2.1413 -7.2889 -0.0006 15 6 3.3252 -8.2485 0.1355 16 1 2.9748 -9.2753 0.0297 17 6 3.9616 -8.0722 1.4902 18 6 3.7597 -8.8650 2.5437 19 6 4.4546 -8.5057 3.6857 20 6 5.2212 -7.4215 3.5594 21 16 5.0908 -6.7944 1.9214 22 7 4.3138 -7.9582 -0.9115 23 6 5.4412 -8.8996 -0.8473 24 6 6.4736 -8.5260 -1.9143 25 8 5.8438 -8.5206 -3.1985 26 6 4.7419 -7.6143 -3.2965 27 6 3.6923 -7.9797 -2.2435 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 3.1568 -3.4354 0.0009 32 1 3.5833 -5.7305 0.0009 33 1 1.6176 -7.4884 -0.9355 34 1 1.4583 -7.4335 0.8365 35 1 3.1035 -9.7221 2.5085 36 1 4.3822 -9.0617 4.6087 37 1 5.8322 -6.9964 4.3420 38 1 5.9024 -8.8485 0.1390 39 1 5.0805 -9.9121 -1.0285 40 1 6.8741 -7.5348 -1.7020 41 1 7.2834 -9.2554 -1.9084 42 1 4.3001 -7.6846 -4.2905 43 1 5.0909 -6.5961 -3.1246 44 1 3.3038 -8.9775 -2.4478 45 1 2.8763 -7.2577 -2.2762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426449387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -52.258706 kcal Electronic energy + Delta-G solvation = -27758.237411 eV Core-core repulsion = 23901.814389 eV Total energy + Delta-G solvation = -3856.423022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27194 -40.43873 -38.90713 -37.42068 -36.11326 -35.11351 -34.26779 -32.28784 -31.99194 -29.59052 -28.66739 -27.19161 -25.45815 -24.72833 -24.24395 -22.63486 -21.98998 -21.17787 -20.20247 -19.66967 -18.47622 -18.06948 -17.65483 -17.01030 -16.98666 -16.64650 -16.40062 -16.30278 -15.97978 -15.94503 -15.34841 -15.33456 -14.94456 -14.89036 -14.38034 -14.09605 -13.98879 -13.73802 -13.56821 -13.19756 -13.07320 -13.00076 -12.86944 -12.75314 -12.70672 -12.32764 -12.20050 -12.07225 -11.58901 -11.49503 -11.42102 -11.21918 -10.79260 -10.68967 -10.24625 -9.61810 -9.53427 -9.50150 -9.26966 -8.26244 -6.42074 0.09549 0.76449 1.19394 1.44682 1.45992 1.59290 1.85412 1.93461 2.29303 2.41008 2.60270 2.95463 3.08898 3.46140 3.61276 3.75701 3.93413 3.96623 4.19851 4.25451 4.28499 4.31702 4.35395 4.51520 4.53336 4.66962 4.70505 4.72608 4.76558 4.83846 4.92025 5.02562 5.11354 5.19478 5.30648 5.39816 5.50092 5.52862 5.57209 5.69916 5.83529 5.87293 5.88363 6.18730 6.29240 6.69883 7.27016 7.33448 7.76262 8.86353 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.003244 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.545006 B = 8628.896488 C = 9601.184878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.287 3.713 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.649 6.649 13 N -0.720 5.720 14 C 0.147 3.853 15 C 0.156 3.844 16 H 0.095 0.905 17 C -0.183 4.183 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.227 4.227 21 S 0.114 5.886 22 N -0.537 5.537 23 C 0.024 3.976 24 C 0.063 3.937 25 O -0.401 6.401 26 C 0.066 3.934 27 C 0.018 3.982 28 H 0.268 0.732 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.402 0.598 32 H 0.406 0.594 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.744 -22.197 1.441 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.164 3.836 10 N -0.377 5.377 11 C 0.393 3.607 12 O -0.532 6.532 13 N -0.378 5.378 14 C 0.022 3.978 15 C 0.046 3.954 16 H 0.113 0.887 17 C -0.301 4.301 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.363 4.363 21 S 0.378 5.622 22 N -0.263 5.263 23 C -0.104 4.104 24 C -0.014 4.014 25 O -0.319 6.319 26 C -0.011 4.011 27 C -0.110 4.110 28 H 0.077 0.923 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.236 0.764 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.414 -20.701 0.600 26.425 hybrid contribution -0.568 -0.670 1.017 1.344 sum 15.846 -21.371 1.617 26.653 Atomic orbital electron populations 1.70145 1.08233 1.28432 1.50122 1.26031 0.95749 1.03746 0.93918 0.85121 0.79063 0.77396 0.77674 1.17736 1.20407 1.20474 1.21620 0.94235 0.90499 1.52655 0.90002 1.18388 0.88028 0.83297 0.93894 1.45292 1.10701 1.03934 1.77767 1.16272 0.85011 0.81550 0.77910 1.90833 1.16580 1.84956 1.60848 1.44786 1.08824 1.04153 1.80018 1.21295 0.95081 0.79440 1.02007 1.20272 0.89973 0.98532 0.86614 0.88727 1.24322 1.05557 1.01017 0.99193 1.20351 1.02485 1.01916 0.92051 1.20372 0.98453 0.98199 1.00278 1.26057 1.07433 1.01996 1.00773 1.84470 1.42232 1.30079 1.05392 1.62145 1.09330 1.51860 1.03004 1.22798 0.92407 0.93951 1.01197 1.22784 0.94556 1.02564 0.81512 1.87964 1.47207 1.63480 1.33299 1.22690 0.86241 0.93026 0.99175 1.22830 0.98048 1.01701 0.88395 0.92283 0.99586 0.99773 0.76379 0.75668 0.91306 0.91924 0.82859 0.82555 0.80521 0.89006 0.93435 0.92328 0.86695 0.87268 0.92613 0.92925 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.01 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.98 42.74 29.54 68.60 2.03 44.77 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.55 -30.55 9.28 25.60 0.24 -30.31 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.29 16.23 5.43 85.64 0.46 16.69 16 10 N -0.72 -32.34 5.55 -482.31 -2.68 -35.01 16 11 C 0.69 29.68 8.57 179.05 1.53 31.21 16 12 O -0.65 -33.95 16.34 -4.00 -0.07 -34.02 16 13 N -0.72 -21.99 5.00 -478.51 -2.39 -24.39 16 14 C 0.15 3.74 4.54 86.38 0.39 4.13 16 15 C 0.16 2.83 2.17 44.17 0.10 2.92 16 16 H 0.10 1.39 8.12 -2.39 -0.02 1.37 16 17 C -0.18 -3.43 3.90 24.59 0.10 -3.33 16 18 C -0.14 -2.30 10.04 21.21 0.21 -2.09 16 19 C -0.14 -2.32 10.18 21.22 0.22 -2.10 16 20 C -0.23 -3.93 11.23 66.72 0.75 -3.18 16 21 S 0.11 2.25 21.10 -56.49 -1.19 1.06 16 22 N -0.54 -9.27 3.68 -874.34 -3.22 -12.49 16 23 C 0.02 0.35 5.44 86.31 0.47 0.82 16 24 C 0.06 0.92 7.01 72.02 0.51 1.42 16 25 O -0.40 -7.63 10.82 -148.98 -1.61 -9.25 16 26 C 0.07 1.15 7.01 72.02 0.50 1.66 16 27 C 0.02 0.32 5.19 86.32 0.45 0.77 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.40 15.26 8.34 -92.70 -0.77 14.49 16 32 H 0.41 10.97 6.55 -92.71 -0.61 10.37 16 33 H 0.07 1.76 6.64 -2.39 -0.02 1.74 16 34 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 35 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.09 1.31 6.67 -2.39 -0.02 1.29 16 39 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 1.74 6.13 -2.38 -0.01 1.73 16 Total: -1.00 -73.61 377.86 -2.82 -76.43 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.36 Total: 29.91 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 6.39 Total: 19.36 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -8.00 Total: -128.26 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.68 Total: -43.26 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.19 Total: 1.06 kcal Total: -73.61 -2.82 -76.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.172 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds