Wall clock time and date at job start Tue Mar 31 2020 22:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38204 * 119.91343 * 2 1 4 4 C 1.38052 * 120.20455 * 180.02562 * 3 2 1 5 5 C 1.39413 * 120.02665 * 359.97438 * 4 3 2 6 6 C 1.48375 * 120.08748 * 179.97438 * 5 4 3 7 7 C 1.39768 * 120.90265 * 0.02562 * 6 5 4 8 8 C 1.37980 * 119.01805 * 180.02562 * 7 6 5 9 9 N 1.31919 * 120.88627 * 0.25349 * 8 7 6 10 10 C 1.31922 * 122.00090 * 359.47435 * 9 8 7 11 11 C 1.37986 * 120.88179 * 0.52555 * 10 9 8 12 12 C 1.39205 * 119.83166 * 0.25374 * 5 4 3 13 13 C 1.38747 * 119.79788 * 359.53731 * 12 5 4 14 14 N 1.39743 * 120.01806 * 180.23983 * 13 12 5 15 15 C 1.34772 * 120.00087 * 24.85752 * 14 13 12 16 16 O 1.21377 * 120.00041 * 5.53029 * 15 14 13 17 17 C 1.49353 * 119.99979 * 185.52264 * 15 14 13 18 18 O 1.21360 * 119.99900 * 0.02562 * 17 15 14 19 19 N 1.34780 * 120.00230 * 180.02562 * 17 15 14 20 20 C 1.46491 * 120.00311 * 180.02562 * 19 17 15 21 21 C 1.50700 * 109.47335 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99720 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00154 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00381 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99995 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47295 * 89.99796 * 25 23 21 27 27 H 1.48500 * 109.47250 * 210.00108 * 25 23 21 28 28 H 1.48501 * 109.46849 * 329.99755 * 25 23 21 29 29 H 1.08996 * 109.47626 * 89.99703 * 1 2 3 30 30 H 1.08994 * 109.47160 * 210.00082 * 1 2 3 31 31 H 1.09004 * 109.47020 * 329.99585 * 1 2 3 32 32 H 1.08000 * 119.90011 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.99075 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.48516 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.55239 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.56238 * 180.26858 * 10 9 8 37 37 H 1.08002 * 120.48832 * 179.76408 * 11 10 9 38 38 H 1.08003 * 120.10454 * 179.75046 * 12 5 4 39 39 H 0.97007 * 119.99759 * 204.86852 * 14 13 12 40 40 H 0.96998 * 119.99520 * 359.97438 * 19 17 15 41 41 H 1.09006 * 109.47520 * 300.00435 * 20 19 17 42 42 H 1.09004 * 109.47141 * 59.99821 * 20 19 17 43 43 H 0.97002 * 120.00465 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1979 0.0000 4 6 3.5767 1.2049 -0.0005 5 6 4.2805 0.0015 -0.0005 6 6 5.7642 0.0074 -0.0017 7 6 6.4772 1.2096 -0.0022 8 6 7.8564 1.1697 -0.0038 9 7 8.5006 0.0186 -0.0099 10 6 7.8658 -1.1379 -0.0043 11 6 6.4869 -1.1888 -0.0027 12 6 3.5876 -1.2059 -0.0053 13 6 2.2001 -1.2046 -0.0004 14 7 1.4999 -2.4140 -0.0001 15 6 2.0805 -3.5287 0.4864 16 8 3.1710 -3.4636 1.0154 17 6 1.3820 -4.8441 0.3748 18 8 0.2918 -4.9092 -0.1545 19 7 1.9624 -5.9588 0.8617 20 6 1.2775 -7.2491 0.7517 21 6 2.1324 -8.3258 1.3690 22 1 3.0899 -8.0740 1.8004 23 6 1.6921 -9.6323 1.3828 24 7 2.4383 -10.5721 1.9210 25 14 0.0362 -10.0680 0.6359 26 1 0.2137 -10.4042 -0.7996 27 1 -0.5373 -11.2364 1.3508 28 1 -0.8842 -8.9095 0.7628 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6532 2.1315 0.0004 33 1 4.1118 2.1431 -0.0010 34 1 5.9562 2.1556 -0.0023 35 1 8.4160 2.0935 -0.0047 36 1 8.4328 -2.0570 -0.0052 37 1 5.9737 -2.1391 -0.0020 38 1 4.1283 -2.1408 -0.0094 39 1 0.5960 -2.4512 -0.3503 40 1 2.8339 -5.9068 1.2844 41 1 0.3225 -7.1994 1.2749 42 1 1.1043 -7.4801 -0.2994 43 1 2.1284 -11.4912 1.9311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427900679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:55 Heat of formation + Delta-G solvation = -4.896252 kcal Electronic energy + Delta-G solvation = -27556.911216 eV Core-core repulsion = 23567.098032 eV Total energy + Delta-G solvation = -3989.813183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25859 -40.36003 -39.29294 -38.08261 -35.71612 -34.63222 -33.85586 -32.46062 -31.66105 -31.43688 -30.18443 -28.45324 -27.23001 -25.23328 -23.92729 -23.61421 -22.60419 -21.66401 -20.97598 -20.11627 -18.87381 -17.97773 -17.12238 -16.77521 -16.46159 -16.06135 -15.92415 -15.67097 -15.31415 -15.21492 -14.79843 -14.48502 -14.27840 -14.23818 -14.05203 -13.75552 -13.69407 -13.34304 -13.23001 -12.85789 -12.58914 -12.50012 -12.32806 -12.13282 -11.77182 -11.67577 -11.25115 -11.12580 -10.90707 -10.88191 -10.21759 -10.08143 -9.73057 -9.61838 -9.40654 -9.37077 -8.91620 -8.70437 -8.48623 -8.24607 -6.29654 -4.34041 0.27313 0.91565 0.93085 1.49142 1.77337 2.41034 3.19208 3.26442 3.26894 3.32020 3.48194 3.77735 3.81400 4.14971 4.23319 4.24082 4.36921 4.58619 4.63043 4.72152 4.80198 4.83729 4.92246 5.02250 5.04442 5.16442 5.26456 5.32361 5.36420 5.49006 5.58697 5.64016 5.80882 5.83003 5.92234 6.07301 6.15077 6.34103 6.44978 6.52221 6.66592 6.76991 6.85021 6.96187 7.18649 7.56664 7.74752 7.90885 8.27844 8.37545 8.69827 9.27394 10.82012 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.002591 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.830865 B =10802.832676 C =12920.214745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.117 4.117 5 C -0.044 4.044 6 C 0.005 3.995 7 C -0.168 4.168 8 C 0.098 3.902 9 N -0.490 5.490 10 C 0.103 3.897 11 C -0.161 4.161 12 C -0.110 4.110 13 C 0.152 3.848 14 N -0.646 5.646 15 C 0.509 3.491 16 O -0.498 6.498 17 C 0.493 3.507 18 O -0.537 6.537 19 N -0.662 5.662 20 C 0.218 3.782 21 C -0.550 4.550 22 H 0.083 0.917 23 C 0.080 3.920 24 N -0.887 5.887 25 Si 0.876 3.124 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.261 1.261 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.424 0.576 40 H 0.411 0.589 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 26.714 -5.212 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.107 4.107 3 C -0.117 4.117 4 C -0.136 4.136 5 C -0.045 4.045 6 C -0.003 4.003 7 C -0.188 4.188 8 C -0.058 4.058 9 N -0.199 5.199 10 C -0.053 4.053 11 C -0.180 4.180 12 C -0.130 4.130 13 C 0.057 3.943 14 N -0.292 5.292 15 C 0.292 3.708 16 O -0.371 6.371 17 C 0.272 3.728 18 O -0.416 6.416 19 N -0.311 5.311 20 C 0.096 3.904 21 C -0.587 4.587 22 H 0.101 0.899 23 C -0.124 4.124 24 N -0.524 5.524 25 Si 0.703 3.297 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.185 1.185 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.263 0.737 40 H 0.247 0.753 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.739 26.348 -5.159 26.987 hybrid contribution -1.785 -0.406 -0.257 1.848 sum 0.954 25.942 -5.417 26.518 Atomic orbital electron populations 1.20807 0.90559 1.03506 1.02824 1.19760 0.96388 0.91537 1.02989 1.20744 0.93712 0.96961 1.00297 1.21158 0.94082 0.97238 1.01142 1.18488 0.90993 0.93152 1.01819 1.19126 0.92149 0.93449 0.95543 1.22190 0.95605 0.98367 1.02626 1.22675 0.91473 0.96364 0.95330 1.67653 1.41568 0.98567 1.12117 1.22755 0.91672 0.96255 0.94594 1.22382 0.95644 0.99072 1.00945 1.21507 0.92397 0.99243 0.99831 1.17500 0.91198 0.84649 1.00985 1.43254 1.19403 1.06289 1.60290 1.20814 0.86131 0.85829 0.78041 1.90714 1.20173 1.86149 1.40094 1.19675 0.86379 0.84965 0.81796 1.90734 1.20285 1.86283 1.44311 1.46127 1.22744 1.07362 1.54877 1.19735 0.93979 0.79052 0.97596 1.21032 1.06090 0.91143 1.40482 0.89886 1.24777 0.97407 0.95872 0.94379 1.69867 1.37514 1.01470 1.43511 0.86829 0.84196 0.78885 0.79839 1.19716 1.20723 1.18509 0.90595 0.91337 0.90696 0.85138 0.85484 0.84593 0.82705 0.82365 0.84069 0.82958 0.73715 0.75337 0.94850 0.95295 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.44 36.01 0.34 -0.51 16 2 C -0.10 -0.98 5.90 -104.36 -0.62 -1.60 16 3 C -0.10 -0.80 9.68 -39.66 -0.38 -1.18 16 4 C -0.12 -1.02 9.45 -39.21 -0.37 -1.39 16 5 C -0.04 -0.48 5.87 -104.93 -0.62 -1.09 16 6 C 0.01 0.06 5.91 -104.58 -0.62 -0.56 16 7 C -0.17 -1.47 9.50 -39.10 -0.37 -1.84 16 8 C 0.10 0.89 11.17 -17.61 -0.20 0.70 16 9 N -0.49 -5.52 10.35 -13.34 -0.14 -5.66 16 10 C 0.10 1.10 11.17 -17.61 -0.20 0.90 16 11 C -0.16 -1.76 9.50 -39.11 -0.37 -2.13 16 12 C -0.11 -1.37 8.11 -39.03 -0.32 -1.68 16 13 C 0.15 1.79 6.40 -83.79 -0.54 1.26 16 14 N -0.65 -8.08 4.96 -10.32 -0.05 -8.13 16 15 C 0.51 7.82 7.69 -11.63 -0.09 7.73 16 16 O -0.50 -8.20 13.63 5.47 0.07 -8.13 16 17 C 0.49 8.93 7.89 -11.63 -0.09 8.84 16 18 O -0.54 -10.61 16.48 5.49 0.09 -10.52 16 19 N -0.66 -13.16 5.54 -61.94 -0.34 -13.50 16 20 C 0.22 5.07 4.50 -5.20 -0.02 5.05 16 21 C -0.55 -14.64 9.83 -34.44 -0.34 -14.98 16 22 H 0.08 2.33 7.84 -52.49 -0.41 1.92 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 25 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 6.97 -51.93 -0.36 0.16 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.78 6.29 -52.49 -0.33 0.45 16 34 H 0.14 0.81 6.34 -52.49 -0.33 0.48 16 35 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.14 1.52 6.34 -52.49 -0.33 1.19 16 38 H 0.15 2.08 4.02 -52.48 -0.21 1.86 16 39 H 0.42 4.64 6.86 -40.82 -0.28 4.36 16 40 H 0.41 7.74 7.79 -40.82 -0.32 7.42 16 41 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 42 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -31.98 366.55 -8.26 -40.24 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.62 Total: 9.73 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.90 Total: -0.39 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.24 Total: -52.29 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.98 -8.26 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427900679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.341 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds