Wall clock time and date at job start Tue Mar 31 2020 22:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38204 * 119.91343 * 2 1 4 4 C 1.38052 * 120.20455 * 180.02562 * 3 2 1 5 5 C 1.39413 * 120.02665 * 359.97438 * 4 3 2 6 6 C 1.48375 * 120.08748 * 179.97438 * 5 4 3 7 7 C 1.39768 * 120.90265 * 0.02562 * 6 5 4 8 8 C 1.37980 * 119.01805 * 180.02562 * 7 6 5 9 9 N 1.31919 * 120.88627 * 0.25349 * 8 7 6 10 10 C 1.31922 * 122.00090 * 359.47435 * 9 8 7 11 11 C 1.37986 * 120.88179 * 0.52555 * 10 9 8 12 12 C 1.39205 * 119.83166 * 0.25374 * 5 4 3 13 13 C 1.38747 * 119.79788 * 359.53731 * 12 5 4 14 14 N 1.39743 * 120.01806 * 180.23983 * 13 12 5 15 15 C 1.34772 * 120.00087 * 24.85752 * 14 13 12 16 16 O 1.21377 * 120.00041 * 5.53029 * 15 14 13 17 17 C 1.49353 * 119.99979 * 185.52264 * 15 14 13 18 18 O 1.21360 * 119.99900 * 0.02562 * 17 15 14 19 19 N 1.34780 * 120.00230 * 180.02562 * 17 15 14 20 20 C 1.46491 * 120.00311 * 180.02562 * 19 17 15 21 21 C 1.50700 * 109.47335 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99720 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00154 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00381 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99995 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47295 * 89.99796 * 25 23 21 27 27 H 1.48500 * 109.47250 * 210.00108 * 25 23 21 28 28 H 1.48501 * 109.46849 * 329.99755 * 25 23 21 29 29 H 1.08996 * 109.47626 * 89.99703 * 1 2 3 30 30 H 1.08994 * 109.47160 * 210.00082 * 1 2 3 31 31 H 1.09004 * 109.47020 * 329.99585 * 1 2 3 32 32 H 1.08000 * 119.90011 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.99075 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.48516 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.55239 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.56238 * 180.26858 * 10 9 8 37 37 H 1.08002 * 120.48832 * 179.76408 * 11 10 9 38 38 H 1.08003 * 120.10454 * 179.75046 * 12 5 4 39 39 H 0.97007 * 119.99759 * 204.86852 * 14 13 12 40 40 H 0.96998 * 119.99520 * 359.97438 * 19 17 15 41 41 H 1.09006 * 109.47520 * 300.00435 * 20 19 17 42 42 H 1.09004 * 109.47141 * 59.99821 * 20 19 17 43 43 H 0.97002 * 120.00465 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1979 0.0000 4 6 3.5767 1.2049 -0.0005 5 6 4.2805 0.0015 -0.0005 6 6 5.7642 0.0074 -0.0017 7 6 6.4772 1.2096 -0.0022 8 6 7.8564 1.1697 -0.0038 9 7 8.5006 0.0186 -0.0099 10 6 7.8658 -1.1379 -0.0043 11 6 6.4869 -1.1888 -0.0027 12 6 3.5876 -1.2059 -0.0053 13 6 2.2001 -1.2046 -0.0004 14 7 1.4999 -2.4140 -0.0001 15 6 2.0805 -3.5287 0.4864 16 8 3.1710 -3.4636 1.0154 17 6 1.3820 -4.8441 0.3748 18 8 0.2918 -4.9092 -0.1545 19 7 1.9624 -5.9588 0.8617 20 6 1.2775 -7.2491 0.7517 21 6 2.1324 -8.3258 1.3690 22 1 3.0899 -8.0740 1.8004 23 6 1.6921 -9.6323 1.3828 24 7 2.4383 -10.5721 1.9210 25 14 0.0362 -10.0680 0.6359 26 1 0.2137 -10.4042 -0.7996 27 1 -0.5373 -11.2364 1.3508 28 1 -0.8842 -8.9095 0.7628 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6532 2.1315 0.0004 33 1 4.1118 2.1431 -0.0010 34 1 5.9562 2.1556 -0.0023 35 1 8.4160 2.0935 -0.0047 36 1 8.4328 -2.0570 -0.0052 37 1 5.9737 -2.1391 -0.0020 38 1 4.1283 -2.1408 -0.0094 39 1 0.5960 -2.4512 -0.3503 40 1 2.8339 -5.9068 1.2844 41 1 0.3225 -7.1994 1.2749 42 1 1.1043 -7.4801 -0.2994 43 1 2.1284 -11.4912 1.9311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427900679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:54 Heat of formation + Delta-G solvation = -26.445751 kcal Electronic energy + Delta-G solvation = -27557.845672 eV Core-core repulsion = 23567.098032 eV Total energy + Delta-G solvation = -3990.747640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33968 -41.23835 -40.39310 -39.29325 -36.87093 -36.11868 -34.78250 -34.40645 -32.40393 -32.14905 -31.07892 -30.27214 -27.95245 -26.51894 -24.92545 -24.34757 -23.88238 -22.90530 -21.89399 -21.45446 -20.17293 -18.97453 -18.63193 -18.01155 -17.36458 -17.25330 -17.09641 -16.85783 -16.57169 -16.08602 -16.02846 -15.82426 -15.33747 -15.05493 -15.03302 -14.86855 -14.64520 -14.47671 -14.35873 -14.14438 -14.01412 -13.47612 -13.25057 -13.15882 -12.86974 -12.73399 -12.71649 -12.45665 -12.09006 -11.93839 -11.87673 -11.72020 -10.97437 -10.95089 -10.74086 -10.49717 -10.22830 -10.14153 -9.52811 -9.04968 -8.41388 -6.51267 -0.49339 -0.10231 0.18125 0.54983 0.86997 1.16895 1.35308 1.37355 1.48459 1.98805 2.27259 2.55633 2.63170 2.93540 3.02908 3.27394 3.41764 3.56505 3.69136 3.89000 3.96641 4.08696 4.12090 4.19276 4.34887 4.38282 4.59437 4.62019 4.70341 4.76669 4.80393 4.87382 4.92890 4.97879 5.05017 5.09027 5.16278 5.20954 5.22840 5.26997 5.42946 5.57745 5.73023 5.80056 5.91560 6.03522 6.38208 6.49402 6.62260 6.83738 7.00010 7.15196 8.73557 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.002591 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.830865 B =10802.832676 C =12920.214745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 C -0.094 4.094 4 C -0.107 4.107 5 C -0.058 4.058 6 C -0.009 4.009 7 C -0.160 4.160 8 C 0.094 3.906 9 N -0.514 5.514 10 C 0.091 3.909 11 C -0.179 4.179 12 C -0.131 4.131 13 C 0.122 3.878 14 N -0.629 5.629 15 C 0.515 3.485 16 O -0.514 6.514 17 C 0.499 3.501 18 O -0.550 6.550 19 N -0.670 5.670 20 C 0.229 3.771 21 C -0.556 4.556 22 H 0.054 0.946 23 C 0.026 3.974 24 N -0.931 5.931 25 Si 0.943 3.057 26 H -0.263 1.263 27 H -0.275 1.275 28 H -0.251 1.251 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.188 0.812 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.431 0.569 40 H 0.414 0.586 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 30.469 -6.078 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.125 4.125 5 C -0.059 4.059 6 C -0.017 4.017 7 C -0.179 4.179 8 C -0.063 4.063 9 N -0.224 5.224 10 C -0.064 4.064 11 C -0.199 4.199 12 C -0.151 4.151 13 C 0.028 3.972 14 N -0.275 5.275 15 C 0.297 3.703 16 O -0.389 6.389 17 C 0.279 3.721 18 O -0.429 6.429 19 N -0.320 5.320 20 C 0.107 3.893 21 C -0.594 4.594 22 H 0.072 0.928 23 C -0.175 4.175 24 N -0.570 5.570 25 Si 0.765 3.235 26 H -0.187 1.187 27 H -0.200 1.200 28 H -0.174 1.174 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.204 0.796 36 H 0.185 0.815 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.272 0.728 40 H 0.250 0.750 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.976 30.152 -6.040 30.766 hybrid contribution -1.171 -1.399 0.013 1.824 sum -0.194 28.752 -6.027 29.378 Atomic orbital electron populations 1.20902 0.88776 1.04184 1.03938 1.20108 0.97734 0.90923 1.01306 1.21207 0.93659 0.97785 0.98568 1.21571 0.94616 0.97449 0.98903 1.18628 0.91154 0.93508 1.02579 1.19342 0.92413 0.94041 0.95873 1.22519 0.95496 0.98861 1.01032 1.23272 0.92148 0.96759 0.94085 1.67684 1.42341 0.99298 1.13051 1.22925 0.91695 0.96871 0.94912 1.22399 0.95998 0.99273 1.02256 1.21454 0.92978 0.99319 1.01385 1.17710 0.91153 0.84904 1.03444 1.43065 1.19477 1.05862 1.59111 1.20162 0.85801 0.85509 0.78802 1.90731 1.20713 1.86195 1.41303 1.20043 0.86028 0.85515 0.80531 1.90712 1.20899 1.86755 1.44577 1.45961 1.22991 1.07085 1.55965 1.19390 0.93290 0.79660 0.97002 1.21241 1.05497 0.92440 1.40179 0.92821 1.25673 1.01321 0.95746 0.94768 1.69992 1.39700 1.02089 1.45182 0.85782 0.79467 0.78960 0.79260 1.18745 1.20001 1.17435 0.89163 0.92190 0.88520 0.81394 0.82258 0.81161 0.79553 0.81485 0.85267 0.85259 0.72850 0.75008 0.95094 0.95261 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.44 71.24 0.67 -0.66 16 2 C -0.10 -1.59 5.90 -19.69 -0.12 -1.70 16 3 C -0.09 -1.14 9.68 22.22 0.21 -0.92 16 4 C -0.11 -1.47 9.45 22.51 0.21 -1.26 16 5 C -0.06 -1.20 5.87 -20.06 -0.12 -1.31 16 6 C -0.01 -0.18 5.91 -19.84 -0.12 -0.30 16 7 C -0.16 -2.40 9.50 22.58 0.21 -2.19 16 8 C 0.09 1.53 11.17 84.62 0.95 2.47 16 9 N -0.51 -11.41 10.35 -196.12 -2.03 -13.43 16 10 C 0.09 2.03 11.17 84.62 0.95 2.98 16 11 C -0.18 -4.18 9.50 22.58 0.21 -3.97 16 12 C -0.13 -3.32 8.11 22.62 0.18 -3.14 16 13 C 0.12 2.80 6.40 38.18 0.24 3.04 16 14 N -0.63 -15.60 4.96 -304.93 -1.51 -17.11 16 15 C 0.52 16.20 7.69 87.24 0.67 16.87 16 16 O -0.51 -17.80 13.63 -3.33 -0.05 -17.84 16 17 C 0.50 18.29 7.89 87.24 0.69 18.98 16 18 O -0.55 -21.53 16.48 -3.28 -0.05 -21.59 16 19 N -0.67 -27.37 5.54 -468.24 -2.59 -29.97 16 20 C 0.23 10.78 4.50 85.63 0.38 11.17 16 21 C -0.56 -30.48 9.83 25.60 0.25 -30.23 16 22 H 0.05 3.18 7.84 -2.91 -0.02 3.15 16 23 C 0.03 1.42 5.47 84.65 0.46 1.88 16 24 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 25 Si 0.94 42.25 27.47 68.60 1.88 44.13 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.78 6.97 -2.39 -0.02 0.76 16 31 H 0.10 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 33 H 0.16 1.11 6.29 -2.91 -0.02 1.09 16 34 H 0.17 1.24 6.34 -2.91 -0.02 1.22 16 35 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.13 3.20 6.34 -2.91 -0.02 3.18 16 38 H 0.13 3.83 4.02 -2.91 -0.01 3.82 16 39 H 0.43 9.11 6.86 -92.70 -0.64 8.48 16 40 H 0.41 16.39 7.79 -92.71 -0.72 15.67 16 41 H 0.03 1.48 7.20 -2.38 -0.02 1.46 16 42 H 0.03 1.38 7.57 -2.38 -0.02 1.37 16 43 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -71.33 366.55 1.59 -69.74 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.31 Total: 29.49 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.95 Total: 11.72 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.84 Total: -115.65 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.10 Total: -39.43 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Total: -71.33 1.59 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427900679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.294 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds