Wall clock time and date at job start Tue Mar 31 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48497 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46832 * 300.00129 * 3 2 1 6 6 H 1.48498 * 109.46914 * 60.00186 * 3 2 1 7 7 C 1.37882 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 173.00620 * 7 2 1 9 9 C 1.50705 * 119.99531 * 353.00693 * 7 2 1 10 10 C 1.52997 * 115.55228 * 84.79026 * 9 7 2 11 11 S 1.81406 * 109.47133 * 39.90399 * 10 9 7 12 12 O 1.42104 * 110.53964 * 62.31658 * 11 10 9 13 13 O 1.42090 * 110.54626 * 285.56445 * 11 10 9 14 14 N 1.65599 * 104.44645 * 173.93833 * 11 10 9 15 15 C 1.46928 * 120.63058 * 90.00185 * 14 11 10 16 16 C 1.53183 * 108.77631 * 233.62847 * 15 14 11 17 17 C 1.53037 * 109.31712 * 305.36630 * 16 15 14 18 18 C 1.50701 * 109.46663 * 181.38746 * 17 16 15 19 19 C 1.39870 * 126.03625 * 299.97670 * 18 17 16 20 20 N 1.30840 * 108.20302 * 179.73777 * 19 18 17 21 21 N 1.40081 * 108.20188 * 0.40164 * 20 19 18 22 22 H 0.97005 * 126.03935 * 179.86174 * 21 20 19 23 23 C 1.34944 * 107.92836 * 359.59062 * 21 20 19 24 24 C 1.53042 * 109.52982 * 61.37066 * 17 16 15 25 25 C 1.46925 * 120.63268 * 270.02290 * 14 11 10 26 26 C 1.53005 * 117.51021 * 230.48227 * 9 7 2 27 27 C 1.52993 * 117.49883 * 299.10950 * 9 7 2 28 28 H 0.96997 * 120.00255 * 5.01569 * 1 2 3 29 29 H 1.09004 * 109.46728 * 279.90970 * 10 9 7 30 30 H 1.08991 * 109.47406 * 159.90815 * 10 9 7 31 31 H 1.09005 * 109.58084 * 113.84223 * 15 14 11 32 32 H 1.08999 * 109.70193 * 353.48997 * 15 14 11 33 33 H 1.09003 * 109.49756 * 185.41268 * 16 15 14 34 34 H 1.09003 * 109.52851 * 65.33585 * 16 15 14 35 35 H 1.09008 * 109.45945 * 301.35909 * 17 16 15 36 36 H 1.08007 * 125.90010 * 359.97438 * 19 18 17 37 37 H 1.08006 * 126.13333 * 180.26853 * 23 21 20 38 38 H 1.09006 * 109.49591 * 58.57925 * 24 17 16 39 39 H 1.08994 * 109.50311 * 178.68297 * 24 17 16 40 40 H 1.08992 * 109.59178 * 246.16045 * 25 14 11 41 41 H 1.09002 * 109.58524 * 6.44515 * 25 14 11 42 42 H 1.09004 * 117.49557 * 214.97028 * 26 9 7 43 43 H 1.08987 * 117.50250 * 359.97438 * 26 9 7 44 44 H 1.08998 * 117.50110 * 359.97438 * 27 9 7 45 45 H 1.09004 * 117.49978 * 145.00041 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2594 -2.4944 0.1578 10 6 0.6800 -3.0840 -1.1297 11 16 1.8648 -2.8583 -2.4848 12 8 3.0720 -3.5569 -2.2130 13 8 1.8827 -1.5030 -2.9110 14 7 1.1963 -3.6784 -3.7587 15 6 0.2863 -2.9995 -4.6914 16 6 -1.0161 -3.8008 -4.7807 17 6 -0.6947 -5.2487 -5.1581 18 6 -1.9763 -6.0321 -5.2803 19 6 -2.9182 -6.2323 -4.2659 20 7 -3.8944 -6.9557 -4.7514 21 7 -3.5995 -7.2468 -6.0895 22 1 -4.1487 -7.7700 -6.6942 23 6 -2.4192 -6.6661 -6.3907 24 6 0.1853 -5.8765 -4.0748 25 6 1.5016 -5.0988 -3.9777 26 6 1.7653 -3.4743 1.2184 27 6 0.4655 -2.7009 1.4492 28 1 -0.4850 0.8368 -0.0734 29 1 -0.2528 -2.5758 -1.3743 30 1 0.4881 -4.1475 -0.9881 31 1 0.7488 -2.9427 -5.6768 32 1 0.0726 -1.9937 -4.3296 33 1 -1.6621 -3.3615 -5.5408 34 1 -1.5234 -3.7804 -3.8161 35 1 -0.1659 -5.2667 -6.1111 36 1 -2.8531 -5.8518 -3.2571 37 1 -1.9179 -6.7006 -7.3467 38 1 -0.3328 -5.8362 -3.1166 39 1 0.3946 -6.9147 -4.3324 40 1 2.0631 -5.2132 -4.9049 41 1 2.0920 -5.4784 -3.1438 42 1 1.6852 -4.5390 0.9989 43 1 2.6374 -3.1788 1.8014 44 1 0.4825 -1.8965 2.1846 45 1 -0.4697 -3.2567 1.3817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451376076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:47 Heat of formation + Delta-G solvation = 21.715545 kcal Electronic energy + Delta-G solvation = -28503.952308 eV Core-core repulsion = 24650.737050 eV Total energy + Delta-G solvation = -3853.215258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41936 -38.30859 -36.68497 -36.12140 -34.86978 -33.42433 -32.01701 -31.41967 -30.94919 -29.18783 -28.11654 -25.45790 -24.25963 -23.17754 -22.26965 -21.16938 -20.77545 -19.98680 -19.30903 -18.35463 -17.66504 -16.88537 -16.32725 -15.51572 -15.05979 -14.79925 -14.74641 -14.59624 -14.24338 -14.14122 -14.09477 -13.77873 -13.52352 -13.39420 -13.03321 -12.71790 -12.28265 -12.13708 -11.82664 -11.70656 -11.20509 -11.17494 -11.07417 -10.97229 -10.94169 -10.85422 -10.60975 -10.58980 -10.48134 -10.33085 -10.26173 -10.05184 -9.82195 -9.64606 -8.93258 -8.65664 -8.62496 -8.50431 -8.04849 -6.12988 -4.27179 1.22382 1.70870 2.62550 2.71470 3.33288 3.42040 3.47410 3.53717 4.42651 4.47675 4.69112 4.74590 4.83839 4.90999 5.08831 5.12818 5.17730 5.20980 5.21860 5.36661 5.40569 5.48345 5.51924 5.62443 5.75358 5.87646 5.92512 5.94935 5.97737 5.98960 6.12842 6.16953 6.33681 6.38104 6.41887 6.49320 6.52198 6.66438 6.73325 6.97116 7.03862 7.05199 7.22810 7.42482 7.46829 7.81942 8.22442 8.81679 9.49753 10.94649 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.003474 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.777205 B = 8057.071945 C = 8235.890239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.098 3.902 3 Si 0.891 3.109 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.051 3.949 10 C -0.559 4.559 11 S 2.623 3.377 12 O -0.975 6.975 13 O -0.941 6.941 14 N -1.014 6.014 15 C 0.122 3.878 16 C -0.126 4.126 17 C -0.005 4.005 18 C -0.222 4.222 19 C 0.060 3.940 20 N -0.298 5.298 21 N -0.483 5.483 22 H 0.437 0.563 23 C 0.054 3.946 24 C -0.126 4.126 25 C 0.121 3.879 26 C -0.205 4.205 27 C -0.145 4.145 28 H 0.264 0.736 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -13.348 -13.305 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.110 4.110 3 Si 0.718 3.282 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.049 3.951 10 C -0.691 4.691 11 S 2.721 3.279 12 O -0.965 6.965 13 O -0.931 6.931 14 N -0.850 5.850 15 C -0.004 4.004 16 C -0.166 4.166 17 C -0.025 4.025 18 C -0.234 4.234 19 C -0.127 4.127 20 N -0.121 5.121 21 N -0.191 5.191 22 H 0.280 0.720 23 C -0.093 4.093 24 C -0.165 4.165 25 C -0.005 4.005 26 C -0.242 4.242 27 C -0.183 4.183 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.199 0.801 37 H 0.191 0.809 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.143 -13.309 -13.065 19.636 hybrid contribution 0.047 0.665 -0.290 0.727 sum -6.096 -12.644 -13.355 19.375 Atomic orbital electron populations 1.69960 1.06160 1.27321 1.46622 1.24890 0.94709 0.99239 0.92117 0.86528 0.80789 0.83237 0.77627 1.19223 1.20288 1.20879 1.20636 0.93677 0.88809 1.54833 0.91303 1.18186 0.98657 0.93946 0.84335 1.30015 1.16600 1.06126 1.16363 1.04736 0.75630 0.73465 0.74098 1.93461 1.42612 1.75085 1.85360 1.93517 1.86328 1.33516 1.79773 1.58300 1.62696 1.19966 1.44002 1.21333 0.88984 0.96254 0.93814 1.21992 0.97473 0.94574 1.02521 1.19392 0.90868 0.93182 0.99073 1.20170 1.00922 1.08850 0.93446 1.23845 0.91508 0.96901 1.00402 1.77350 1.23614 1.20495 0.90594 1.46288 1.18223 1.43876 1.10687 0.71985 1.22387 0.88937 0.97679 1.00267 1.21996 0.96070 0.98995 0.99478 1.21321 0.96151 0.80252 1.02727 1.23120 0.98671 0.95578 1.06841 1.22522 0.92385 1.01086 1.02349 0.92628 0.85551 0.88749 0.91727 0.88774 0.91035 0.91137 0.90640 0.80087 0.80902 0.91284 0.91080 0.91660 0.89290 0.91292 0.89755 0.89712 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.95 12.96 55.43 0.72 -23.23 16 2 C 0.10 2.69 5.39 -17.82 -0.10 2.60 16 3 Si 0.89 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.54 -14.95 6.89 -34.44 -0.24 -15.18 16 8 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 9 C 0.05 1.24 1.64 -155.66 -0.26 0.98 16 10 C -0.56 -11.68 6.29 37.16 0.23 -11.45 16 11 S 2.62 55.29 4.59 -107.50 -0.49 54.80 16 12 O -0.97 -22.50 16.72 -57.54 -0.96 -23.47 16 13 O -0.94 -23.22 15.86 -57.54 -0.91 -24.13 16 14 N -1.01 -15.70 3.22 -113.52 -0.37 -16.06 16 15 C 0.12 1.63 6.31 -3.71 -0.02 1.61 16 16 C -0.13 -1.38 5.24 -26.62 -0.14 -1.52 16 17 C -0.01 -0.05 2.51 -91.73 -0.23 -0.28 16 18 C -0.22 -2.09 4.80 -105.05 -0.50 -2.60 16 19 C 0.06 0.65 11.51 -17.36 -0.20 0.45 16 20 N -0.30 -3.41 12.70 30.63 0.39 -3.02 16 21 N -0.48 -3.93 7.36 30.45 0.22 -3.71 16 22 H 0.44 2.14 8.96 -182.61 -1.64 0.50 16 23 C 0.05 0.41 11.88 -17.23 -0.20 0.21 16 24 C -0.13 -1.28 5.24 -26.61 -0.14 -1.42 16 25 C 0.12 1.52 6.32 -3.71 -0.02 1.50 16 26 C -0.20 -4.46 9.88 -26.73 -0.26 -4.73 16 27 C -0.14 -3.30 9.50 -26.73 -0.25 -3.55 16 28 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.13 2.67 8.14 -51.92 -0.42 2.25 16 30 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.42 7.10 -51.93 -0.37 1.05 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.81 8.06 -51.93 -0.42 0.40 16 35 H 0.08 0.63 8.11 -51.92 -0.42 0.20 16 36 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.18 7.09 -51.93 -0.37 0.81 16 42 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.08 1.82 8.14 -51.94 -0.42 1.40 16 44 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -34.65 378.47 -11.30 -45.94 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.24 Total: 3.65 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: -2.34 Total: -33.37 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.97 Total: -46.02 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.87 Total: -47.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 55.29 SS G_CDS: -0.49 Total: 54.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.65 -11.30 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451376076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.659 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds