Wall clock time and date at job start Tue Mar 31 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48497 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46832 * 300.00129 * 3 2 1 6 6 H 1.48498 * 109.46914 * 60.00186 * 3 2 1 7 7 C 1.37882 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 173.00620 * 7 2 1 9 9 C 1.50705 * 119.99531 * 353.00693 * 7 2 1 10 10 C 1.52997 * 115.55228 * 84.79026 * 9 7 2 11 11 S 1.81406 * 109.47133 * 39.90399 * 10 9 7 12 12 O 1.42104 * 110.53964 * 62.31658 * 11 10 9 13 13 O 1.42090 * 110.54626 * 285.56445 * 11 10 9 14 14 N 1.65599 * 104.44645 * 173.93833 * 11 10 9 15 15 C 1.46928 * 120.63058 * 90.00185 * 14 11 10 16 16 C 1.53183 * 108.77631 * 233.62847 * 15 14 11 17 17 C 1.53037 * 109.31712 * 305.36630 * 16 15 14 18 18 C 1.50701 * 109.46663 * 181.38746 * 17 16 15 19 19 C 1.39870 * 126.03625 * 299.97670 * 18 17 16 20 20 N 1.30840 * 108.20302 * 179.73777 * 19 18 17 21 21 N 1.40081 * 108.20188 * 0.40164 * 20 19 18 22 22 H 0.97005 * 126.03935 * 179.86174 * 21 20 19 23 23 C 1.34944 * 107.92836 * 359.59062 * 21 20 19 24 24 C 1.53042 * 109.52982 * 61.37066 * 17 16 15 25 25 C 1.46925 * 120.63268 * 270.02290 * 14 11 10 26 26 C 1.53005 * 117.51021 * 230.48227 * 9 7 2 27 27 C 1.52993 * 117.49883 * 299.10950 * 9 7 2 28 28 H 0.96997 * 120.00255 * 5.01569 * 1 2 3 29 29 H 1.09004 * 109.46728 * 279.90970 * 10 9 7 30 30 H 1.08991 * 109.47406 * 159.90815 * 10 9 7 31 31 H 1.09005 * 109.58084 * 113.84223 * 15 14 11 32 32 H 1.08999 * 109.70193 * 353.48997 * 15 14 11 33 33 H 1.09003 * 109.49756 * 185.41268 * 16 15 14 34 34 H 1.09003 * 109.52851 * 65.33585 * 16 15 14 35 35 H 1.09008 * 109.45945 * 301.35909 * 17 16 15 36 36 H 1.08007 * 125.90010 * 359.97438 * 19 18 17 37 37 H 1.08006 * 126.13333 * 180.26853 * 23 21 20 38 38 H 1.09006 * 109.49591 * 58.57925 * 24 17 16 39 39 H 1.08994 * 109.50311 * 178.68297 * 24 17 16 40 40 H 1.08992 * 109.59178 * 246.16045 * 25 14 11 41 41 H 1.09002 * 109.58524 * 6.44515 * 25 14 11 42 42 H 1.09004 * 117.49557 * 214.97028 * 26 9 7 43 43 H 1.08987 * 117.50250 * 359.97438 * 26 9 7 44 44 H 1.08998 * 117.50110 * 359.97438 * 27 9 7 45 45 H 1.09004 * 117.49978 * 145.00041 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2594 -2.4944 0.1578 10 6 0.6800 -3.0840 -1.1297 11 16 1.8648 -2.8583 -2.4848 12 8 3.0720 -3.5569 -2.2130 13 8 1.8827 -1.5030 -2.9110 14 7 1.1963 -3.6784 -3.7587 15 6 0.2863 -2.9995 -4.6914 16 6 -1.0161 -3.8008 -4.7807 17 6 -0.6947 -5.2487 -5.1581 18 6 -1.9763 -6.0321 -5.2803 19 6 -2.9182 -6.2323 -4.2659 20 7 -3.8944 -6.9557 -4.7514 21 7 -3.5995 -7.2468 -6.0895 22 1 -4.1487 -7.7700 -6.6942 23 6 -2.4192 -6.6661 -6.3907 24 6 0.1853 -5.8765 -4.0748 25 6 1.5016 -5.0988 -3.9777 26 6 1.7653 -3.4743 1.2184 27 6 0.4655 -2.7009 1.4492 28 1 -0.4850 0.8368 -0.0734 29 1 -0.2528 -2.5758 -1.3743 30 1 0.4881 -4.1475 -0.9881 31 1 0.7488 -2.9427 -5.6768 32 1 0.0726 -1.9937 -4.3296 33 1 -1.6621 -3.3615 -5.5408 34 1 -1.5234 -3.7804 -3.8161 35 1 -0.1659 -5.2667 -6.1111 36 1 -2.8531 -5.8518 -3.2571 37 1 -1.9179 -6.7006 -7.3467 38 1 -0.3328 -5.8362 -3.1166 39 1 0.3946 -6.9147 -4.3324 40 1 2.0631 -5.2132 -4.9049 41 1 2.0920 -5.4784 -3.1438 42 1 1.6852 -4.5390 0.9989 43 1 2.6374 -3.1788 1.8014 44 1 0.4825 -1.8965 2.1846 45 1 -0.4697 -3.2567 1.3817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451376076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:46 Heat of formation + Delta-G solvation = -1.968041 kcal Electronic energy + Delta-G solvation = -28504.979305 eV Core-core repulsion = 24650.737050 eV Total energy + Delta-G solvation = -3854.242255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08311 -39.26828 -38.51260 -37.86906 -36.62816 -34.36706 -34.08089 -32.10630 -31.89994 -29.97785 -29.82518 -27.50301 -25.20324 -24.11789 -22.97559 -22.94927 -21.81758 -21.15968 -20.60380 -19.65290 -18.75581 -18.37127 -17.91807 -16.98631 -16.83679 -16.49342 -15.59400 -15.48208 -15.45215 -15.38013 -15.18328 -15.00433 -14.80136 -14.46570 -14.38463 -13.88120 -13.72471 -13.51889 -13.34508 -13.03413 -12.87516 -12.82252 -12.74351 -12.58806 -12.42804 -12.30838 -12.06394 -12.02893 -11.85715 -11.58936 -11.54039 -11.31263 -11.15718 -10.84237 -10.51062 -10.50341 -10.04596 -9.67796 -9.29273 -8.21819 -6.39158 -0.38793 1.08866 1.34990 1.40048 1.48731 1.91989 2.11782 2.18217 2.40231 3.08056 3.17609 3.34706 3.55973 3.75475 3.79475 4.07176 4.15931 4.17921 4.29317 4.35777 4.41046 4.42044 4.56323 4.61644 4.62654 4.68525 4.80714 4.85972 4.88093 4.96154 4.97863 4.99346 5.12976 5.17243 5.18458 5.22343 5.34096 5.41727 5.47581 5.61814 5.66993 5.70027 5.79055 5.88569 6.22535 6.56020 6.70063 6.81266 7.38408 8.85344 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.003474 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.777205 B = 8057.071945 C = 8235.890239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.060 3.940 3 Si 0.927 3.073 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.046 0.954 9 C 0.015 3.985 10 C -0.553 4.553 11 S 2.630 3.370 12 O -1.001 7.001 13 O -0.988 6.988 14 N -1.005 6.005 15 C 0.115 3.885 16 C -0.121 4.121 17 C 0.004 3.996 18 C -0.239 4.239 19 C 0.046 3.954 20 N -0.339 5.339 21 N -0.475 5.475 22 H 0.450 0.550 23 C 0.074 3.926 24 C -0.121 4.121 25 C 0.112 3.888 26 C -0.190 4.190 27 C -0.142 4.142 28 H 0.266 0.734 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.179 0.821 37 H 0.214 0.786 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -15.365 -15.258 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.145 4.145 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.064 0.936 9 C 0.013 3.987 10 C -0.685 4.685 11 S 2.729 3.271 12 O -0.992 6.992 13 O -0.978 6.978 14 N -0.844 5.844 15 C -0.009 4.009 16 C -0.160 4.160 17 C -0.016 4.016 18 C -0.251 4.251 19 C -0.140 4.140 20 N -0.162 5.162 21 N -0.185 5.185 22 H 0.296 0.704 23 C -0.074 4.074 24 C -0.160 4.160 25 C -0.012 4.012 26 C -0.227 4.227 27 C -0.181 4.181 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.196 0.804 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.723 -15.331 -15.002 22.479 hybrid contribution 0.220 1.216 0.240 1.259 sum -6.503 -14.115 -14.762 21.434 Atomic orbital electron populations 1.69992 1.06637 1.27859 1.47336 1.25421 0.95485 1.01399 0.92229 0.85982 0.79723 0.80958 0.78143 1.19611 1.20270 1.19202 1.20762 0.92926 0.90879 1.54853 0.93560 1.18338 1.00120 0.93978 0.86274 1.29887 1.15799 1.07997 1.14827 1.04137 0.75543 0.72694 0.74770 1.93414 1.44382 1.75254 1.86133 1.93451 1.87076 1.36585 1.80658 1.57858 1.62827 1.21225 1.42491 1.21543 0.90090 0.95440 0.93866 1.21955 0.95895 0.95649 1.02509 1.19304 0.90980 0.91629 0.99645 1.20160 1.00937 1.10162 0.93818 1.23979 0.92039 0.97063 1.00925 1.77291 1.24648 1.21836 0.92421 1.46347 1.18652 1.43548 1.09921 0.70413 1.22973 0.88007 0.95381 1.01058 1.21976 0.94630 0.99710 0.99695 1.21645 0.97872 0.78295 1.03402 1.23200 0.97844 0.96850 1.04836 1.22458 0.93787 1.00966 1.00896 0.92432 0.86269 0.85228 0.89510 0.91262 0.89594 0.92367 0.88457 0.80373 0.76969 0.92016 0.88958 0.89510 0.90174 0.88100 0.90215 0.91835 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.62 12.96 21.45 0.28 -49.34 16 2 C 0.06 3.36 5.39 84.66 0.46 3.81 16 3 Si 0.93 45.45 29.55 68.60 2.03 47.48 16 4 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.56 -31.44 6.89 25.60 0.18 -31.27 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.01 0.72 1.64 -52.93 -0.09 0.64 16 10 C -0.55 -22.97 6.29 71.98 0.45 -22.51 16 11 S 2.63 111.85 4.59 -56.49 -0.26 111.59 16 12 O -1.00 -46.55 16.72 -127.65 -2.13 -48.68 16 13 O -0.99 -50.29 15.86 -127.65 -2.02 -52.32 16 14 N -1.01 -30.07 3.22 -513.07 -1.65 -31.72 16 15 C 0.12 2.96 6.31 86.36 0.54 3.51 16 16 C -0.12 -2.39 5.24 30.67 0.16 -2.23 16 17 C 0.00 0.06 2.51 -11.51 -0.03 0.03 16 18 C -0.24 -3.76 4.80 -20.14 -0.10 -3.86 16 19 C 0.05 0.92 11.51 85.24 0.98 1.90 16 20 N -0.34 -7.25 12.70 -57.02 -0.72 -7.98 16 21 N -0.48 -6.39 7.36 -57.59 -0.42 -6.81 16 22 H 0.45 3.13 8.96 -213.33 -1.91 1.22 16 23 C 0.07 0.81 11.88 83.54 0.99 1.81 16 24 C -0.12 -2.10 5.24 30.67 0.16 -1.94 16 25 C 0.11 2.56 6.32 86.37 0.55 3.11 16 26 C -0.19 -8.09 9.88 30.60 0.30 -7.79 16 27 C -0.14 -6.43 9.50 30.59 0.29 -6.14 16 28 H 0.27 14.22 8.32 -92.71 -0.77 13.45 16 29 H 0.12 5.10 8.14 -2.39 -0.02 5.08 16 30 H 0.13 4.30 7.95 -2.40 -0.02 4.28 16 31 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.07 2.13 7.10 -2.39 -0.02 2.11 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.10 1.12 8.11 -2.38 -0.02 1.11 16 36 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.21 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.06 1.17 8.06 -2.38 -0.02 1.15 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.99 7.09 -2.39 -0.02 1.97 16 42 H 0.10 3.61 8.08 -2.39 -0.02 3.59 16 43 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -76.83 378.47 -0.98 -77.81 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.92 Total: 20.89 kcal Atomic # 6 Polarization: -65.77 SS G_CDS: 4.85 Total: -60.92 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -2.52 Total: -95.86 kcal Atomic # 8 Polarization: -96.84 SS G_CDS: -4.16 Total: -101.00 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 111.85 SS G_CDS: -0.26 Total: 111.59 kcal Total: -76.83 -0.98 -77.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451376076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.844 kcal (2) G-P(sol) polarization free energy of solvation -76.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds