Wall clock time and date at job start Tue Mar 31 2020 23:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47229 * 267.02942 * 3 2 1 5 5 C 1.36926 * 120.00396 * 273.04633 * 4 3 2 6 6 H 1.08002 * 120.00017 * 187.22710 * 5 4 3 7 7 C 1.38818 * 120.00076 * 7.22252 * 5 4 3 8 8 N 1.31614 * 119.99971 * 27.03160 * 7 5 4 9 9 Si 1.86794 * 119.99901 * 207.03047 * 7 5 4 10 10 H 1.48503 * 109.47557 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47096 * 119.99990 * 9 7 5 12 12 H 1.48502 * 109.47431 * 240.00089 * 9 7 5 13 13 S 1.65603 * 119.99587 * 93.04590 * 4 3 2 14 14 O 1.42108 * 106.40301 * 336.45791 * 13 4 3 15 15 O 1.42100 * 106.40209 * 203.54521 * 13 4 3 16 16 C 1.76192 * 107.22063 * 89.99865 * 13 4 3 17 17 C 1.39870 * 126.04059 * 269.69180 * 16 13 4 18 18 C 1.50694 * 125.90091 * 359.97438 * 17 16 13 19 19 N 1.30845 * 108.20010 * 179.81556 * 17 16 13 20 20 N 1.40080 * 108.20429 * 0.43926 * 19 17 16 21 21 C 1.46507 * 126.03646 * 179.73899 * 20 19 17 22 22 C 1.53005 * 109.47156 * 269.97702 * 21 20 19 23 23 C 1.53000 * 109.47009 * 64.99914 * 22 21 20 24 24 C 1.52992 * 109.47043 * 185.00012 * 22 21 20 25 25 C 1.34942 * 107.92850 * 359.71888 * 20 19 17 26 26 C 1.50699 * 126.13036 * 179.97438 * 25 20 19 27 27 H 4.40642 * 5.51518 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.47109 * 147.03432 * 3 2 1 29 29 H 1.08996 * 109.47373 * 27.03537 * 3 2 1 30 30 H 0.97000 * 120.00057 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46984 * 90.00081 * 18 17 16 32 32 H 1.08998 * 109.47423 * 209.99658 * 18 17 16 33 33 H 1.09000 * 109.47293 * 330.00381 * 18 17 16 34 34 H 1.08998 * 109.46593 * 29.97344 * 21 20 19 35 35 H 1.08991 * 109.46964 * 149.97768 * 21 20 19 36 36 H 1.09005 * 109.46674 * 305.00076 * 22 21 20 37 37 H 1.09002 * 109.46869 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47155 * 299.99812 * 23 22 21 39 39 H 1.08995 * 109.47754 * 59.99939 * 23 22 21 40 40 H 1.09001 * 109.47322 * 59.99868 * 24 22 21 41 41 H 1.09001 * 109.47126 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47438 * 299.99596 * 24 22 21 43 43 H 1.08995 * 109.47660 * 270.02845 * 26 25 20 44 44 H 1.08999 * 109.46944 * 30.02559 * 26 25 20 45 45 H 1.09004 * 109.47269 * 150.02229 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0725 1.3794 5 6 3.3026 1.2896 1.9836 6 1 3.7711 1.3501 2.9549 7 6 2.8712 2.4458 1.3479 8 7 1.8771 2.3916 0.4871 9 14 3.7017 4.0784 1.7141 10 1 4.7840 3.8710 2.7096 11 1 4.2799 4.6312 0.4630 12 1 2.7019 5.0308 2.2605 13 16 3.4828 -1.3185 2.2077 14 8 2.7254 -2.3520 1.5931 15 8 3.3837 -0.9987 3.5887 16 6 5.1769 -1.6957 1.9045 17 6 5.6698 -2.4892 0.8634 18 6 4.8426 -3.1716 -0.1953 19 7 6.9735 -2.5338 0.9656 20 7 7.3511 -1.7772 2.0824 21 6 8.7206 -1.5690 2.5594 22 6 9.0856 -2.6692 3.5581 23 6 9.1075 -4.0212 2.8422 24 6 10.4672 -2.3830 4.1498 25 6 6.2308 -1.2737 2.6411 26 6 6.1648 -0.3986 3.8662 27 1 -1.0500 0.0002 0.0001 28 1 3.0090 0.8631 -0.5592 29 1 3.0098 -0.9145 -0.4671 30 1 1.5754 3.1995 0.0431 31 1 4.7212 -2.5037 -1.0481 32 1 5.3449 -4.0839 -0.5170 33 1 3.8633 -3.4208 0.2134 34 1 9.4085 -1.6025 1.7146 35 1 8.7915 -0.5971 3.0475 36 1 8.3456 -2.6936 4.3582 37 1 9.3670 -4.8050 3.5539 38 1 8.1231 -4.2251 2.4207 39 1 9.8473 -3.9968 2.0422 40 1 10.4516 -1.4198 4.6598 41 1 10.7274 -3.1670 4.8609 42 1 11.2071 -2.3586 3.3497 43 1 6.0693 -1.0232 4.7542 44 1 7.0751 0.1967 3.9369 45 1 5.3023 0.2640 3.7934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490876277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:28 Heat of formation + Delta-G solvation = 62.773365 kcal Electronic energy + Delta-G solvation = -28939.181040 eV Core-core repulsion = 25087.746183 eV Total energy + Delta-G solvation = -3851.434857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.17040 -36.73956 -36.29242 -36.02063 -34.78120 -33.16522 -31.66131 -31.60931 -30.87007 -28.90908 -27.40801 -26.95440 -26.33552 -25.23243 -23.66038 -21.30223 -20.32715 -19.31355 -18.42996 -17.81516 -17.31099 -16.50363 -16.25058 -15.63095 -15.32051 -15.19469 -14.48661 -14.32928 -13.94418 -13.70259 -13.40463 -13.22112 -13.14868 -13.04379 -12.97119 -12.54226 -12.37622 -12.34567 -12.27289 -12.04505 -11.76958 -11.60515 -11.42985 -11.24721 -11.21127 -11.06003 -10.92675 -10.88495 -10.84143 -10.69005 -10.41151 -10.08949 -9.98587 -9.48301 -9.03678 -8.85830 -8.65378 -8.62371 -8.03141 -6.14331 -3.72557 1.50100 1.91965 2.57450 2.66382 3.22163 3.31962 3.33748 3.98218 4.27539 4.34893 4.42958 4.46088 4.61424 4.68171 4.75095 4.83383 4.85643 5.09584 5.11748 5.13830 5.25950 5.30078 5.32904 5.41116 5.56038 5.63374 5.67177 5.73612 5.77416 5.78013 5.94431 5.96094 6.09239 6.11811 6.12833 6.25781 6.31098 6.45208 6.84079 6.88542 7.11676 7.16945 7.39219 7.65841 7.83422 8.44644 9.02835 9.15672 9.38497 10.84273 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.004661 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.825972 B = 6005.924047 C = 7155.291959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.094 4.094 3 C 0.257 3.743 4 N -0.848 5.848 5 C -0.330 4.330 6 H 0.107 0.893 7 C 0.046 3.954 8 N -0.855 5.855 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.285 1.285 13 S 2.702 3.298 14 O -0.979 6.979 15 O -0.971 6.971 16 C -0.809 4.809 17 C 0.158 3.842 18 C -0.106 4.106 19 N -0.303 5.303 20 N -0.365 5.365 21 C 0.130 3.870 22 C -0.114 4.114 23 C -0.146 4.146 24 C -0.144 4.144 25 C 0.210 3.790 26 C -0.116 4.116 27 H 0.196 0.804 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.264 0.736 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.196 -6.917 2.391 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.097 4.097 3 C 0.131 3.869 4 N -0.680 5.680 5 C -0.459 4.459 6 H 0.125 0.875 7 C -0.160 4.160 8 N -0.493 5.493 9 Si 0.722 3.278 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.211 1.211 13 S 2.790 3.210 14 O -0.969 6.969 15 O -0.961 6.961 16 C -0.904 4.904 17 C -0.011 4.011 18 C -0.164 4.164 19 N -0.123 5.123 20 N -0.144 5.144 21 C 0.009 3.991 22 C -0.134 4.134 23 C -0.203 4.203 24 C -0.202 4.202 25 C 0.078 3.922 26 C -0.174 4.174 27 H 0.213 0.787 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.898 -7.748 2.340 16.083 hybrid contribution 0.260 1.596 0.148 1.623 sum 14.158 -6.152 2.489 15.636 Atomic orbital electron populations 1.24136 0.95272 1.07652 1.02090 1.23039 0.94255 0.94266 0.98145 1.17782 0.84584 1.00428 0.84132 1.52973 1.73687 1.19583 1.21750 1.19109 1.40964 0.81992 1.03796 0.87519 1.24935 0.95293 0.98371 0.97377 1.70228 1.21086 1.28607 1.29357 0.86396 0.79907 0.83338 0.78132 1.19549 1.20912 1.21102 1.01471 0.73670 0.72426 0.73457 1.93423 1.68796 1.56734 1.77961 1.93448 1.86613 1.84238 1.31798 1.31972 1.26319 1.21762 1.10342 1.21809 0.91071 0.93855 0.94355 1.20743 1.00268 0.99811 0.95578 1.77241 1.13655 1.17243 1.04209 1.48899 1.05760 1.38403 1.21301 1.21883 0.79343 0.99382 0.98513 1.21548 0.98447 0.95649 0.97742 1.21816 1.02983 0.95500 1.00014 1.21772 0.95447 1.02005 1.00945 1.20856 0.85358 0.91959 0.94072 1.20940 1.05223 0.98698 0.92551 0.78714 0.87892 0.92206 0.92529 0.89908 0.90764 0.86897 0.88619 0.88770 0.90491 0.92753 0.91804 0.92504 0.92239 0.91940 0.92279 0.88946 0.90857 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.20 19.25 29.55 0.57 -5.63 16 2 C -0.09 -2.29 11.22 -37.12 -0.42 -2.71 16 3 C 0.26 5.90 5.10 -6.83 -0.03 5.87 16 4 N -0.85 -20.31 2.88 -62.77 -0.18 -20.49 16 5 C -0.33 -8.33 9.36 -15.06 -0.14 -8.47 16 6 H 0.11 2.62 6.12 -52.49 -0.32 2.30 16 7 C 0.05 1.17 4.86 -17.43 -0.08 1.08 16 8 N -0.85 -22.34 9.09 55.49 0.50 -21.84 16 9 Si 0.90 19.59 29.63 -169.99 -5.04 14.56 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 S 2.70 60.21 5.55 -107.50 -0.60 59.62 16 14 O -0.98 -22.51 14.37 -57.17 -0.82 -23.33 16 15 O -0.97 -23.10 14.66 -57.17 -0.84 -23.94 16 16 C -0.81 -15.77 6.17 -40.01 -0.25 -16.01 16 17 C 0.16 2.88 7.21 -82.40 -0.59 2.28 16 18 C -0.11 -1.65 10.14 36.00 0.37 -1.29 16 19 N -0.30 -5.24 11.64 33.67 0.39 -4.85 16 20 N -0.37 -5.66 3.21 -57.14 -0.18 -5.85 16 21 C 0.13 1.43 5.64 -4.04 -0.02 1.41 16 22 C -0.11 -1.09 3.13 -90.62 -0.28 -1.38 16 23 C -0.15 -1.53 9.05 37.16 0.34 -1.20 16 24 C -0.14 -1.00 9.19 37.15 0.34 -0.66 16 25 C 0.21 3.63 6.92 -82.27 -0.57 3.06 16 26 C -0.12 -1.74 9.15 36.01 0.33 -1.41 16 27 H 0.20 3.67 7.80 -54.09 -0.42 3.24 16 28 H 0.10 2.43 6.50 -51.93 -0.34 2.10 16 29 H 0.06 1.20 7.68 -51.93 -0.40 0.80 16 30 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 1.91 5.66 -51.93 -0.29 1.61 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.85 7.05 -51.93 -0.37 0.48 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.85 6.95 -51.93 -0.36 0.49 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.07 0.84 7.08 -51.93 -0.37 0.47 16 45 H 0.11 1.97 5.48 -51.93 -0.28 1.69 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -31.90 378.80 -8.02 -39.92 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.52 Total: 5.55 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -0.45 Total: -25.04 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.53 Total: -53.02 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.66 Total: -47.28 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.04 Total: 14.56 kcal Atomic # 16 Polarization: 60.21 SS G_CDS: -0.60 Total: 59.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.90 -8.02 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.691 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds