Wall clock time and date at job start Tue Mar 31 2020 23:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38340 * 120.44681 * 2 1 4 4 C 1.38836 * 118.50334 * 180.02562 * 3 2 1 5 5 C 1.38070 * 119.33001 * 0.02562 * 4 3 2 6 6 N 1.31940 * 120.85351 * 359.73693 * 5 4 3 7 7 C 1.32426 * 121.62234 * 0.53251 * 6 5 4 8 8 N 1.39005 * 119.71070 * 179.75142 * 7 6 5 9 9 N 1.40107 * 119.99497 * 359.72081 * 8 7 6 10 10 C 1.34776 * 119.99749 * 179.97438 * 9 8 7 11 11 O 1.21722 * 120.00062 * 0.02562 * 10 9 8 12 12 C 1.46258 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.35017 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.46959 * 120.00038 * 180.27838 * 13 12 10 15 15 C 1.40027 * 120.10020 * 359.44210 * 14 13 12 16 16 C 1.37600 * 119.89865 * 179.76483 * 15 14 13 17 17 C 1.39178 * 120.09588 * 0.51950 * 16 15 14 18 18 O 1.35575 * 119.89246 * 179.75989 * 17 16 15 19 19 C 1.34788 * 116.99724 * 174.41897 * 18 17 16 20 20 H 1.08001 * 119.99986 * 5.05268 * 19 18 17 21 21 C 1.38714 * 119.99689 * 185.05615 * 19 18 17 22 22 N 1.31507 * 120.00501 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99791 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47217 * 59.99795 * 23 21 19 25 25 H 1.48498 * 109.47252 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47165 * 300.00220 * 23 21 19 27 27 C 1.39170 * 120.20637 * 359.73340 * 17 16 15 28 28 C 1.37600 * 120.10245 * 0.02562 * 27 17 16 29 29 H 1.08994 * 109.47027 * 269.97313 * 1 2 3 30 30 H 1.08998 * 109.47435 * 29.97827 * 1 2 3 31 31 H 1.09003 * 109.47276 * 149.97863 * 1 2 3 32 32 H 1.07998 * 120.75187 * 0.04173 * 3 2 1 33 33 H 1.08003 * 120.33623 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.57069 * 179.97438 * 5 4 3 35 35 H 0.96999 * 120.00364 * 179.72932 * 8 7 6 36 36 H 0.96999 * 119.99548 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.99444 * 0.02562 * 12 10 9 38 38 H 1.08000 * 119.99958 * 359.97438 * 13 12 10 39 39 H 1.08005 * 120.04929 * 0.02968 * 15 14 13 40 40 H 1.07995 * 119.95299 * 180.23374 * 16 15 14 41 41 H 0.96997 * 120.00219 * 180.02562 * 22 21 19 42 42 H 1.08007 * 119.94857 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.05051 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1926 0.0000 4 6 3.5956 1.1455 -0.0005 5 6 4.2307 -0.0804 -0.0016 6 7 3.5362 -1.2022 0.0031 7 6 2.2120 -1.1991 -0.0015 8 7 1.5202 -2.4048 -0.0015 9 7 2.2241 -3.6162 -0.0026 10 6 1.5534 -4.7852 -0.0020 11 8 0.3361 -4.7885 -0.0011 12 6 2.2881 -6.0498 -0.0026 13 6 1.6163 -7.2210 -0.0026 14 6 2.3545 -8.4917 0.0031 15 6 3.7548 -8.4903 -0.0033 16 6 4.4419 -9.6824 0.0069 17 6 3.7471 -10.8884 0.0126 18 8 4.4282 -12.0606 0.0178 19 6 3.7022 -13.1896 0.1400 20 1 2.6233 -13.1399 0.1461 21 6 4.3407 -14.4154 0.2580 22 7 5.6544 -14.4759 0.2512 23 14 3.3345 -15.9801 0.4282 24 1 2.4652 -16.1418 -0.7649 25 1 4.2474 -17.1463 0.5366 26 1 2.4910 -15.8960 1.6474 27 6 2.3554 -10.8947 0.0137 28 6 1.6599 -9.7074 0.0085 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6877 2.1390 0.0007 33 1 4.1724 2.0587 -0.0010 34 1 5.3099 -0.1216 -0.0025 35 1 0.5502 -2.4074 -0.0009 36 1 3.1941 -3.6134 -0.0029 37 1 3.3681 -6.0468 -0.0030 38 1 0.5363 -7.2239 -0.0017 39 1 4.2947 -7.5549 -0.0120 40 1 5.5218 -9.6824 0.0057 41 1 6.1008 -15.3331 0.3334 42 1 1.8204 -11.8329 0.0178 43 1 0.5800 -9.7132 0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493294455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:17 Heat of formation + Delta-G solvation = 33.401580 kcal Electronic energy + Delta-G solvation = -26179.684100 eV Core-core repulsion = 22191.531636 eV Total energy + Delta-G solvation = -3988.152465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50648 -40.88547 -40.49869 -38.53189 -37.08134 -34.79089 -34.66754 -34.05289 -33.26850 -31.96673 -30.63741 -29.35332 -28.00414 -27.48491 -25.07001 -23.84879 -23.49314 -23.16935 -22.23723 -20.93323 -19.95622 -19.16082 -18.94023 -18.68656 -17.66944 -16.67149 -16.49343 -16.33152 -16.31343 -16.12763 -15.93952 -15.62194 -15.44136 -15.42206 -15.06805 -14.87055 -14.61157 -14.11348 -13.87788 -13.75621 -13.60298 -13.39468 -13.33712 -13.18971 -12.85561 -12.67269 -12.59689 -12.44213 -12.24636 -12.14597 -11.27836 -11.21374 -11.12902 -10.70722 -10.58511 -10.47579 -10.25571 -9.88986 -8.75916 -8.52022 -8.38997 -6.18255 -0.30853 0.30114 0.47718 0.59123 0.92511 1.10380 1.36146 1.47300 1.51917 2.15642 2.25924 2.83787 2.85875 2.92798 3.17641 3.42257 3.59238 3.84819 3.88604 3.94234 4.08822 4.14848 4.22746 4.23106 4.32168 4.45139 4.48729 4.64747 4.67353 4.75310 4.85860 4.94431 5.00666 5.14071 5.17692 5.19959 5.22785 5.32582 5.40481 5.49958 5.59448 5.63815 5.79070 5.89929 5.97251 6.10268 6.15943 6.52266 6.92218 7.04473 7.32750 7.69037 8.69775 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.001535 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.117314 B =18238.886310 C =19075.701020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.203 4.203 3 C -0.034 4.034 4 C -0.223 4.223 5 C 0.129 3.871 6 N -0.569 5.569 7 C 0.377 3.623 8 N -0.527 5.527 9 N -0.506 5.506 10 C 0.551 3.449 11 O -0.593 6.593 12 C -0.242 4.242 13 C 0.030 3.970 14 C -0.173 4.173 15 C -0.037 4.037 16 C -0.208 4.208 17 C 0.131 3.869 18 O -0.219 6.219 19 C -0.419 4.419 20 H 0.106 0.894 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.250 4.250 28 C -0.037 4.037 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.439 0.561 36 H 0.438 0.562 37 H 0.154 0.846 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.126 0.874 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 30.688 -0.289 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.211 4.211 3 C -0.060 4.060 4 C -0.245 4.245 5 C -0.027 4.027 6 N -0.288 5.288 7 C 0.142 3.858 8 N -0.259 5.259 9 N -0.251 5.251 10 C 0.343 3.657 11 O -0.475 6.475 12 C -0.264 4.264 13 C 0.010 3.990 14 C -0.174 4.174 15 C -0.054 4.054 16 C -0.227 4.227 17 C 0.079 3.921 18 O -0.124 6.124 19 C -0.494 4.494 20 H 0.124 0.876 21 C -0.216 4.216 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.181 1.181 27 C -0.269 4.269 28 C -0.055 4.055 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.195 0.805 35 H 0.285 0.715 36 H 0.281 0.719 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.177 0.823 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.291 29.527 -0.289 30.415 hybrid contribution -0.324 -0.423 0.040 0.534 sum -7.615 29.104 -0.250 30.085 Atomic orbital electron populations 1.20668 0.89059 1.03546 1.03069 1.20288 0.98224 0.91539 1.11038 1.21638 0.94317 0.97724 0.92335 1.22210 0.95380 0.99968 1.06966 1.22882 1.00815 0.86788 0.92238 1.67007 1.05929 1.34046 1.21809 1.18317 0.89247 0.84252 0.93935 1.43389 1.06601 0.93698 1.82222 1.44663 1.09086 0.96357 1.75019 1.18641 0.87217 0.83536 0.76322 1.90781 1.14901 1.87906 1.53910 1.22405 1.01279 0.89510 1.13222 1.22153 0.99636 0.90057 0.87136 1.18736 0.93197 0.92530 1.12914 1.21308 0.93178 0.97102 0.93836 1.20421 1.00184 0.90114 1.11997 1.20205 0.92095 0.87352 0.92488 1.83888 1.36715 1.12369 1.79437 1.21877 0.92141 0.82579 1.52815 0.87634 1.26607 0.97344 1.02213 0.95480 1.70141 1.09672 1.27735 1.47416 0.84650 0.77260 0.74427 0.79944 1.18091 1.19629 1.18136 1.21209 0.93279 0.99822 1.12586 1.21325 1.00273 0.90477 0.93378 0.90480 0.88979 0.92564 0.81818 0.82140 0.80474 0.71501 0.71878 0.82844 0.85183 0.82274 0.85975 0.91593 0.85661 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.59 71.24 0.68 -0.39 16 2 C -0.20 -2.91 5.92 -19.63 -0.12 -3.03 16 3 C -0.03 -0.35 9.85 22.44 0.22 -0.13 16 4 C -0.22 -2.20 10.10 22.37 0.23 -1.98 16 5 C 0.13 1.76 11.17 84.64 0.95 2.70 16 6 N -0.57 -11.03 9.37 -193.26 -1.81 -12.84 16 7 C 0.38 7.32 7.58 133.05 1.01 8.33 16 8 N -0.53 -11.16 6.33 -55.44 -0.35 -11.51 16 9 N -0.51 -11.11 6.28 -176.69 -1.11 -12.22 16 10 C 0.55 14.08 7.85 86.33 0.68 14.76 16 11 O -0.59 -18.75 16.07 -4.42 -0.07 -18.82 16 12 C -0.24 -5.56 9.41 23.61 0.22 -5.34 16 13 C 0.03 0.79 9.45 23.82 0.23 1.01 16 14 C -0.17 -5.27 5.87 -20.13 -0.12 -5.39 16 15 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 16 C -0.21 -8.27 9.97 22.34 0.22 -8.05 16 17 C 0.13 6.21 6.66 22.72 0.15 6.36 16 18 O -0.22 -12.67 9.74 -20.39 -0.20 -12.87 16 19 C -0.42 -23.48 9.48 67.93 0.64 -22.83 16 20 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 21 C -0.02 -0.96 5.49 84.86 0.47 -0.50 16 22 N -0.91 -54.28 13.67 21.62 0.30 -53.98 16 23 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 C -0.25 -10.35 9.14 22.34 0.20 -10.15 16 28 C -0.04 -1.21 9.78 22.55 0.22 -0.99 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 31 H 0.06 0.65 6.57 -2.39 -0.02 0.63 16 32 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.44 9.05 5.98 -213.32 -1.27 7.77 16 36 H 0.44 8.35 7.93 -213.32 -1.69 6.66 16 37 H 0.15 2.73 6.07 -2.91 -0.02 2.71 16 38 H 0.13 3.34 7.52 -2.91 -0.02 3.32 16 39 H 0.16 3.60 6.16 -2.91 -0.02 3.59 16 40 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 42 H 0.13 5.24 5.62 -2.91 -0.02 5.22 16 43 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -74.61 374.91 3.00 -71.61 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -1.88 Total: 33.80 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 6.10 Total: -26.53 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -2.98 Total: -90.56 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.27 Total: -31.69 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -74.61 3.00 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493294455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.011 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds