Wall clock time and date at job start Tue Mar 31 2020 23:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38347 * 120.44737 * 2 1 4 4 C 1.38836 * 118.50442 * 179.78319 * 3 2 1 5 5 C 1.38068 * 119.32848 * 0.49907 * 4 3 2 6 6 N 1.31949 * 120.85291 * 359.74224 * 5 4 3 7 7 C 1.32420 * 121.62016 * 0.02562 * 6 5 4 8 8 N 1.39011 * 119.70391 * 179.97438 * 7 6 5 9 9 N 1.40101 * 119.99756 * 0.02562 * 8 7 6 10 10 C 1.34775 * 120.00018 * 180.02562 * 9 8 7 11 11 O 1.21721 * 119.99875 * 0.02562 * 10 9 8 12 12 C 1.46259 * 120.00044 * 180.02562 * 10 9 8 13 13 C 1.35025 * 119.99926 * 173.21529 * 12 10 9 14 14 C 1.46955 * 119.99946 * 348.68014 * 13 12 10 15 15 C 1.40031 * 120.10083 * 316.40326 * 14 13 12 16 16 C 1.37598 * 119.89420 * 179.74516 * 15 14 13 17 17 C 1.39172 * 120.10213 * 0.55816 * 16 15 14 18 18 O 1.35578 * 119.89729 * 179.72203 * 17 16 15 19 19 C 1.34784 * 117.00144 * 174.34096 * 18 17 16 20 20 H 1.08001 * 119.99938 * 5.05295 * 19 18 17 21 21 C 1.38719 * 120.00169 * 185.05976 * 19 18 17 22 22 N 1.31506 * 119.99931 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 119.99810 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47221 * 90.00313 * 23 21 19 25 25 H 1.48498 * 109.47224 * 210.00173 * 23 21 19 26 26 H 1.48503 * 109.47581 * 330.00176 * 23 21 19 27 27 C 1.39177 * 120.20635 * 359.69793 * 17 16 15 28 28 C 1.37594 * 120.10043 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.46833 * 269.71678 * 1 2 3 30 30 H 1.08997 * 109.47006 * 149.72051 * 1 2 3 31 31 H 1.09001 * 109.47286 * 29.71712 * 1 2 3 32 32 H 1.08001 * 120.74567 * 0.03158 * 3 2 1 33 33 H 1.08004 * 120.33629 * 180.22158 * 4 3 2 34 34 H 1.08001 * 119.57637 * 179.77318 * 5 4 3 35 35 H 0.96991 * 120.00155 * 180.02562 * 8 7 6 36 36 H 0.97005 * 120.00010 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.99980 * 353.20313 * 12 10 9 38 38 H 1.08000 * 119.99765 * 168.67844 * 13 12 10 39 39 H 1.07999 * 120.05219 * 0.02788 * 15 14 13 40 40 H 1.08002 * 119.94760 * 180.25468 * 16 15 14 41 41 H 0.97001 * 119.99689 * 179.97438 * 22 21 19 42 42 H 1.07998 * 119.95220 * 180.02562 * 27 17 16 43 43 H 1.07992 * 120.05543 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1927 0.0000 4 6 3.5956 1.1456 0.0046 5 6 4.2307 -0.0803 -0.0014 6 7 3.5362 -1.2022 -0.0064 7 6 2.2120 -1.1990 -0.0063 8 7 1.5202 -2.4047 -0.0123 9 7 2.2241 -3.6161 -0.0177 10 6 1.5535 -4.7851 -0.0240 11 8 0.3363 -4.7884 -0.0253 12 6 2.2882 -6.0497 -0.0291 13 6 1.6233 -7.2174 0.1028 14 6 0.2079 -7.2164 0.4982 15 6 -0.2329 -6.3764 1.5283 16 6 -1.5601 -6.3750 1.8915 17 6 -2.4616 -7.2151 1.2447 18 8 -3.7673 -7.2145 1.6098 19 6 -4.6101 -7.9617 0.8694 20 1 -4.2238 -8.5892 0.0799 21 6 -5.9737 -7.9246 1.1215 22 7 -6.7960 -8.6532 0.3988 23 14 -6.6418 -6.8397 2.4874 24 1 -6.9579 -5.4951 1.9418 25 1 -7.8752 -7.4498 3.0457 26 1 -5.6235 -6.7114 3.5607 27 6 -2.0271 -8.0556 0.2240 28 6 -0.7030 -8.0597 -0.1499 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8874 -0.5182 31 1 -0.3634 0.8925 -0.5094 32 1 1.6877 2.1390 0.0005 33 1 4.1724 2.0587 0.0084 34 1 5.3100 -0.1216 -0.0016 35 1 0.5503 -2.4074 -0.0126 36 1 3.1942 -3.6134 -0.0170 37 1 3.3627 -6.0495 -0.1386 38 1 2.1316 -8.1522 -0.0823 39 1 0.4669 -5.7274 2.0337 40 1 -1.9017 -5.7246 2.6831 41 1 -7.7494 -8.6276 0.5753 42 1 -2.7304 -8.7055 -0.2754 43 1 -0.3667 -8.7118 -0.9423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493294456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:22 Heat of formation + Delta-G solvation = 72.083484 kcal Electronic energy + Delta-G solvation = -27547.921218 eV Core-core repulsion = 23561.446127 eV Total energy + Delta-G solvation = -3986.475091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72831 -39.79298 -38.90228 -36.92590 -35.85570 -33.98499 -33.19189 -32.49929 -32.24725 -30.24941 -29.67315 -28.08720 -27.33006 -25.42333 -23.87982 -22.54781 -22.44346 -21.96397 -21.11565 -19.77686 -18.24924 -17.89761 -17.80828 -17.19536 -16.63413 -15.74741 -15.55584 -15.32114 -14.85431 -14.69026 -14.58725 -14.37357 -13.93427 -13.88257 -13.67398 -13.49898 -13.28996 -13.11023 -13.00799 -12.80225 -12.62550 -12.31108 -12.14323 -11.88591 -11.83430 -11.50340 -10.99610 -10.80250 -10.70266 -10.18022 -9.98088 -9.84445 -9.69377 -9.53947 -9.41564 -9.26727 -8.79471 -8.09649 -7.53129 -7.03126 -6.44694 -4.08547 0.93834 1.03526 1.21575 1.88720 2.29479 2.56014 3.21182 3.25066 3.39451 3.42099 3.62362 3.69827 4.22024 4.45167 4.49996 4.58421 4.73503 4.78288 4.82848 4.86641 5.11356 5.11719 5.20417 5.21730 5.34613 5.43216 5.47418 5.63304 5.71925 5.75573 5.81630 6.02858 6.11810 6.14709 6.27056 6.32887 6.44695 6.60287 6.71483 6.88562 7.12868 7.14728 7.27570 7.34496 7.51690 7.63944 7.81656 7.87494 8.03341 8.44005 8.90345 9.54282 10.62553 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002505 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.959075 B =11174.949118 C =12870.911014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.196 4.196 3 C -0.031 4.031 4 C -0.235 4.235 5 C 0.146 3.854 6 N -0.548 5.548 7 C 0.406 3.594 8 N -0.515 5.515 9 N -0.521 5.521 10 C 0.539 3.461 11 O -0.518 6.518 12 C -0.257 4.257 13 C 0.035 3.965 14 C -0.185 4.185 15 C 0.010 3.990 16 C -0.203 4.203 17 C 0.178 3.822 18 O -0.212 6.212 19 C -0.388 4.388 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.238 4.238 28 C -0.041 4.041 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.441 0.559 36 H 0.427 0.573 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.280 0.720 42 H 0.133 0.867 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.035 15.586 -0.850 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.204 4.204 3 C -0.056 4.056 4 C -0.258 4.258 5 C -0.011 4.011 6 N -0.267 5.267 7 C 0.169 3.831 8 N -0.245 5.245 9 N -0.269 5.269 10 C 0.329 3.671 11 O -0.393 6.393 12 C -0.279 4.279 13 C 0.015 3.985 14 C -0.186 4.186 15 C -0.009 4.009 16 C -0.222 4.222 17 C 0.124 3.876 18 O -0.116 6.116 19 C -0.463 4.463 20 H 0.126 0.874 21 C -0.140 4.140 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.257 4.257 28 C -0.060 4.060 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.173 0.827 35 H 0.288 0.712 36 H 0.268 0.732 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 21.264 14.621 -0.715 25.816 hybrid contribution -0.595 1.252 0.273 1.412 sum 20.670 15.873 -0.442 26.065 Atomic orbital electron populations 1.20643 0.90122 1.03090 1.02746 1.20009 0.97237 0.91769 1.11420 1.21207 0.93970 0.97118 0.93354 1.21792 0.95063 0.99316 1.09613 1.22344 0.99545 0.86821 0.92389 1.67040 1.05654 1.32441 1.21540 1.18031 0.88751 0.84111 0.92159 1.43355 1.06762 0.93919 1.80474 1.44956 1.08483 0.96190 1.77229 1.18696 0.88183 0.82761 0.77460 1.91008 1.12793 1.86327 1.49180 1.22322 0.99553 0.91054 1.15000 1.22366 0.93223 0.96494 0.86402 1.18362 0.92540 1.04573 1.03103 1.20454 0.93977 0.92600 0.93845 1.19997 0.92563 1.04119 1.05556 1.19276 0.84277 0.92320 0.91687 1.83506 1.14253 1.62427 1.51401 1.20834 0.87484 1.22557 1.15449 0.87433 1.24496 0.94538 0.97006 0.97984 1.69624 1.04141 1.38742 1.38802 0.86178 0.78504 0.80206 0.82024 1.19825 1.20720 1.18305 1.21077 0.96426 1.05325 1.02873 1.20803 0.92661 0.95592 0.96895 0.90852 0.91739 0.90851 0.84782 0.85092 0.82722 0.71199 0.73161 0.85468 0.85380 0.87919 0.86845 0.90965 0.84981 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.59 36.01 0.35 -0.55 16 2 C -0.20 -1.88 5.92 -104.27 -0.62 -2.50 16 3 C -0.03 -0.24 9.85 -39.32 -0.39 -0.63 16 4 C -0.23 -1.71 10.10 -39.42 -0.40 -2.10 16 5 C 0.15 1.22 11.17 -17.56 -0.20 1.02 16 6 N -0.55 -5.94 9.37 -12.44 -0.12 -6.05 16 7 C 0.41 4.61 7.58 -155.01 -1.17 3.44 16 8 N -0.52 -6.34 6.33 31.12 0.20 -6.14 16 9 N -0.52 -6.31 6.28 30.16 0.19 -6.13 16 10 C 0.54 7.64 6.89 -13.04 -0.09 7.55 16 11 O -0.52 -9.41 12.01 5.17 0.06 -9.35 16 12 C -0.26 -3.01 9.90 -37.50 -0.37 -3.38 16 13 C 0.04 0.45 9.80 -37.19 -0.36 0.09 16 14 C -0.18 -3.21 4.54 -105.02 -0.48 -3.69 16 15 C 0.01 0.18 6.60 -39.14 -0.26 -0.08 16 16 C -0.20 -4.32 9.97 -39.47 -0.39 -4.71 16 17 C 0.18 4.27 6.66 -38.89 -0.26 4.01 16 18 O -0.21 -5.72 8.57 0.71 0.01 -5.72 16 19 C -0.39 -11.06 9.94 30.91 0.31 -10.76 16 20 H 0.11 3.13 5.41 -52.49 -0.28 2.84 16 21 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 22 N -0.88 -25.37 13.96 55.48 0.77 -24.60 16 23 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 27 C -0.24 -5.30 9.14 -39.47 -0.36 -5.66 16 28 C -0.04 -0.77 9.78 -39.15 -0.38 -1.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.44 5.60 5.98 -182.60 -1.09 4.51 16 36 H 0.43 4.39 7.93 -182.59 -1.45 2.94 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.10 1.75 7.02 -52.49 -0.37 1.38 16 40 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.13 3.06 5.62 -52.49 -0.29 2.77 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -33.25 368.87 -10.13 -43.39 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.77 Total: 9.44 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -5.17 Total: -17.40 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 1.04 Total: -42.92 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.07 Total: -15.06 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.25 -10.13 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493294456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.470 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds