Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38347 * 120.44737 * 2 1 4 4 C 1.38836 * 118.50442 * 179.78319 * 3 2 1 5 5 C 1.38068 * 119.32848 * 0.49907 * 4 3 2 6 6 N 1.31949 * 120.85291 * 359.74224 * 5 4 3 7 7 C 1.32420 * 121.62016 * 0.02562 * 6 5 4 8 8 N 1.39011 * 119.70391 * 179.97438 * 7 6 5 9 9 N 1.40101 * 119.99756 * 0.02562 * 8 7 6 10 10 C 1.34775 * 120.00018 * 180.02562 * 9 8 7 11 11 O 1.21721 * 119.99875 * 0.02562 * 10 9 8 12 12 C 1.46259 * 120.00044 * 180.02562 * 10 9 8 13 13 C 1.35025 * 119.99926 * 173.21529 * 12 10 9 14 14 C 1.46955 * 119.99946 * 348.68014 * 13 12 10 15 15 C 1.40031 * 120.10083 * 316.40326 * 14 13 12 16 16 C 1.37598 * 119.89420 * 179.74516 * 15 14 13 17 17 C 1.39172 * 120.10213 * 0.55816 * 16 15 14 18 18 O 1.35578 * 119.89729 * 179.72203 * 17 16 15 19 19 C 1.34784 * 117.00144 * 174.34096 * 18 17 16 20 20 H 1.08001 * 119.99938 * 5.05295 * 19 18 17 21 21 C 1.38719 * 120.00169 * 185.05976 * 19 18 17 22 22 N 1.31506 * 119.99931 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 119.99810 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47221 * 90.00313 * 23 21 19 25 25 H 1.48498 * 109.47224 * 210.00173 * 23 21 19 26 26 H 1.48503 * 109.47581 * 330.00176 * 23 21 19 27 27 C 1.39177 * 120.20635 * 359.69793 * 17 16 15 28 28 C 1.37594 * 120.10043 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.46833 * 269.71678 * 1 2 3 30 30 H 1.08997 * 109.47006 * 149.72051 * 1 2 3 31 31 H 1.09001 * 109.47286 * 29.71712 * 1 2 3 32 32 H 1.08001 * 120.74567 * 0.03158 * 3 2 1 33 33 H 1.08004 * 120.33629 * 180.22158 * 4 3 2 34 34 H 1.08001 * 119.57637 * 179.77318 * 5 4 3 35 35 H 0.96991 * 120.00155 * 180.02562 * 8 7 6 36 36 H 0.97005 * 120.00010 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.99980 * 353.20313 * 12 10 9 38 38 H 1.08000 * 119.99765 * 168.67844 * 13 12 10 39 39 H 1.07999 * 120.05219 * 0.02788 * 15 14 13 40 40 H 1.08002 * 119.94760 * 180.25468 * 16 15 14 41 41 H 0.97001 * 119.99689 * 179.97438 * 22 21 19 42 42 H 1.07998 * 119.95220 * 180.02562 * 27 17 16 43 43 H 1.07992 * 120.05543 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1927 0.0000 4 6 3.5956 1.1456 0.0046 5 6 4.2307 -0.0803 -0.0014 6 7 3.5362 -1.2022 -0.0064 7 6 2.2120 -1.1990 -0.0063 8 7 1.5202 -2.4047 -0.0123 9 7 2.2241 -3.6161 -0.0177 10 6 1.5535 -4.7851 -0.0240 11 8 0.3363 -4.7884 -0.0253 12 6 2.2882 -6.0497 -0.0291 13 6 1.6233 -7.2174 0.1028 14 6 0.2079 -7.2164 0.4982 15 6 -0.2329 -6.3764 1.5283 16 6 -1.5601 -6.3750 1.8915 17 6 -2.4616 -7.2151 1.2447 18 8 -3.7673 -7.2145 1.6098 19 6 -4.6101 -7.9617 0.8694 20 1 -4.2238 -8.5892 0.0799 21 6 -5.9737 -7.9246 1.1215 22 7 -6.7960 -8.6532 0.3988 23 14 -6.6418 -6.8397 2.4874 24 1 -6.9579 -5.4951 1.9418 25 1 -7.8752 -7.4498 3.0457 26 1 -5.6235 -6.7114 3.5607 27 6 -2.0271 -8.0556 0.2240 28 6 -0.7030 -8.0597 -0.1499 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8874 -0.5182 31 1 -0.3634 0.8925 -0.5094 32 1 1.6877 2.1390 0.0005 33 1 4.1724 2.0587 0.0084 34 1 5.3100 -0.1216 -0.0016 35 1 0.5503 -2.4074 -0.0126 36 1 3.1942 -3.6134 -0.0170 37 1 3.3627 -6.0495 -0.1386 38 1 2.1316 -8.1522 -0.0823 39 1 0.4669 -5.7274 2.0337 40 1 -1.9017 -5.7246 2.6831 41 1 -7.7494 -8.6276 0.5753 42 1 -2.7304 -8.7055 -0.2754 43 1 -0.3667 -8.7118 -0.9423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493294456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = 51.264099 kcal Electronic energy + Delta-G solvation = -27548.824015 eV Core-core repulsion = 23561.446127 eV Total energy + Delta-G solvation = -3987.377888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54138 -41.04318 -40.42878 -38.42031 -36.94180 -34.70463 -34.66122 -34.15331 -33.26208 -31.87279 -30.62866 -29.43639 -28.02552 -27.31724 -24.95184 -23.70553 -23.45758 -23.14854 -22.42564 -20.91037 -19.81944 -19.29148 -18.92249 -18.73171 -17.62725 -16.70380 -16.56465 -16.37852 -16.22608 -15.96328 -15.76350 -15.66816 -15.48454 -15.10326 -15.07867 -14.68222 -14.46765 -14.28128 -14.11569 -13.88020 -13.82392 -13.76926 -13.42861 -13.16670 -12.80323 -12.65591 -12.50719 -12.45460 -12.31412 -11.97531 -11.35326 -11.11179 -10.87865 -10.67928 -10.48730 -10.47384 -10.23099 -9.67317 -8.65574 -8.52995 -8.37940 -6.23923 -0.11216 0.30609 0.48225 0.66684 0.99053 1.06563 1.27744 1.33604 1.48939 2.25568 2.34925 2.78521 2.88828 2.93182 3.03324 3.21175 3.71225 3.85032 3.92902 4.00529 4.09498 4.12577 4.15467 4.21840 4.45165 4.51864 4.56622 4.66140 4.70208 4.75568 4.84122 4.91892 5.12901 5.14038 5.16373 5.20440 5.32734 5.40928 5.42783 5.54794 5.66250 5.76123 5.79371 5.89017 5.93207 6.22647 6.26195 6.60021 6.81136 7.08547 7.42796 7.56673 8.58554 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002505 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.959075 B =11174.949118 C =12870.911014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.208 4.208 3 C -0.035 4.035 4 C -0.225 4.225 5 C 0.133 3.867 6 N -0.564 5.564 7 C 0.380 3.620 8 N -0.530 5.530 9 N -0.505 5.505 10 C 0.527 3.473 11 O -0.567 6.567 12 C -0.221 4.221 13 C 0.015 3.985 14 C -0.154 4.154 15 C 0.010 3.990 16 C -0.209 4.209 17 C 0.134 3.866 18 O -0.244 6.244 19 C -0.401 4.401 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.920 5.920 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.263 1.263 26 H -0.265 1.265 27 C -0.253 4.253 28 C -0.049 4.049 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.436 0.564 36 H 0.437 0.563 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.286 0.714 42 H 0.110 0.890 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.714 17.970 -0.727 32.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.216 4.216 3 C -0.060 4.060 4 C -0.247 4.247 5 C -0.024 4.024 6 N -0.283 5.283 7 C 0.145 3.855 8 N -0.261 5.261 9 N -0.252 5.252 10 C 0.317 3.683 11 O -0.446 6.446 12 C -0.243 4.243 13 C -0.005 4.005 14 C -0.155 4.155 15 C -0.008 4.008 16 C -0.228 4.228 17 C 0.085 3.915 18 O -0.151 6.151 19 C -0.477 4.477 20 H 0.100 0.900 21 C -0.188 4.188 22 N -0.560 5.560 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.187 1.187 26 H -0.190 1.190 27 C -0.272 4.272 28 C -0.067 4.067 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.201 0.799 35 H 0.281 0.719 36 H 0.280 0.720 37 H 0.196 0.804 38 H 0.193 0.807 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 26.058 17.054 -0.599 31.149 hybrid contribution -1.424 0.795 0.101 1.634 sum 24.634 17.850 -0.498 30.425 Atomic orbital electron populations 1.20645 0.89779 1.03255 1.02780 1.20246 0.97774 0.92012 1.11576 1.21612 0.94556 0.97487 0.92371 1.22199 0.95063 1.00201 1.07229 1.22935 1.00905 0.86652 0.91927 1.67026 1.05478 1.33881 1.21907 1.18275 0.89340 0.84146 0.93717 1.43464 1.06639 0.94197 1.81826 1.44848 1.08910 0.96103 1.75343 1.19302 0.87856 0.84049 0.77060 1.91008 1.14920 1.87057 1.51602 1.22790 1.01651 0.88966 1.10901 1.22615 0.90470 0.99121 0.88258 1.18922 0.95043 1.01086 1.00409 1.20731 0.93080 0.92819 0.94156 1.20222 0.93488 1.03661 1.05465 1.19744 0.83828 0.94319 0.93613 1.83452 1.15364 1.63893 1.52380 1.20757 0.88397 1.22938 1.15580 0.89997 1.25283 0.94596 0.98478 1.00413 1.69702 1.04611 1.40864 1.40871 0.85239 0.78052 0.78609 0.78923 1.19223 1.18714 1.18952 1.21127 0.97994 1.05195 1.02883 1.21166 0.91179 0.96625 0.97773 0.90876 0.93092 0.89152 0.82206 0.82044 0.79947 0.71901 0.71981 0.80419 0.80704 0.85874 0.86589 0.90471 0.87246 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.59 71.24 0.68 -1.03 16 2 C -0.21 -3.71 5.92 -19.63 -0.12 -3.82 16 3 C -0.03 -0.44 9.85 22.44 0.22 -0.22 16 4 C -0.22 -2.46 10.10 22.37 0.23 -2.23 16 5 C 0.13 1.79 11.17 84.63 0.95 2.74 16 6 N -0.56 -10.99 9.37 -193.26 -1.81 -12.81 16 7 C 0.38 8.16 7.58 133.04 1.01 9.17 16 8 N -0.53 -12.66 6.33 -55.45 -0.35 -13.01 16 9 N -0.51 -11.13 6.28 -176.69 -1.11 -12.24 16 10 C 0.53 13.53 6.89 86.33 0.59 14.13 16 11 O -0.57 -20.05 12.01 -4.41 -0.05 -20.11 16 12 C -0.22 -4.03 9.90 23.62 0.23 -3.80 16 13 C 0.01 0.31 9.80 23.82 0.23 0.54 16 14 C -0.15 -5.01 4.54 -20.12 -0.09 -5.10 16 15 C 0.01 0.38 6.60 22.55 0.15 0.53 16 16 C -0.21 -9.17 9.97 22.34 0.22 -8.95 16 17 C 0.13 6.85 6.66 22.72 0.15 7.01 16 18 O -0.24 -14.10 8.57 -20.38 -0.17 -14.28 16 19 C -0.40 -24.65 9.94 67.93 0.68 -23.97 16 20 H 0.08 5.26 5.41 -2.91 -0.02 5.24 16 21 C 0.01 0.66 5.49 84.86 0.47 1.12 16 22 N -0.92 -56.25 13.96 21.62 0.30 -55.95 16 23 Si 0.97 47.15 28.62 68.60 1.96 49.12 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 27 C -0.25 -11.91 9.14 22.34 0.20 -11.70 16 28 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.94 6.56 -2.39 -0.02 0.93 16 31 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 33 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.44 11.27 5.98 -213.33 -1.27 9.99 16 36 H 0.44 7.63 7.93 -213.31 -1.69 5.94 16 37 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.12 3.95 7.02 -2.91 -0.02 3.93 16 40 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 41 H 0.29 15.95 8.31 -92.71 -0.77 15.18 16 42 H 0.11 5.57 5.62 -2.91 -0.02 5.56 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -79.78 368.87 2.91 -76.87 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -1.89 Total: 29.60 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 6.03 Total: -27.19 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -2.97 Total: -94.01 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.23 Total: -34.38 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.96 Total: 49.12 kcal Total: -79.78 2.91 -76.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493294456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.133 kcal (2) G-P(sol) polarization free energy of solvation -79.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds