Wall clock time and date at job start Tue Mar 31 2020 22:35:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86798 * 120.00163 * 2 1
4 4 H 1.48507 * 109.47298 * 269.99929 * 3 2 1
5 5 H 1.48503 * 109.47108 * 29.99879 * 3 2 1
6 6 H 1.48499 * 109.47414 * 150.00053 * 3 2 1
7 7 C 1.37881 * 120.00048 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00091 * 180.27965 * 7 2 1
9 9 C 1.50694 * 119.99848 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46970 * 180.02562 * 9 7 2
11 11 C 1.53004 * 109.47299 * 180.02562 * 10 9 7
12 12 H 1.09003 * 109.46617 * 305.00239 * 11 10 9
13 13 N 1.46893 * 109.47357 * 64.99652 * 11 10 9
14 14 C 1.50697 * 109.47442 * 185.00231 * 11 10 9
15 15 O 1.21275 * 119.99809 * 259.99606 * 14 11 10
16 16 N 1.34779 * 120.00328 * 79.99340 * 14 11 10
17 17 C 1.39405 * 120.00011 * 174.91950 * 16 14 11
18 18 C 1.39036 * 119.69468 * 185.07202 * 17 16 14
19 19 C 1.38352 * 119.10241 * 179.97438 * 18 17 16
20 20 C 1.50707 * 120.75573 * 179.97438 * 19 18 17
21 21 S 1.81396 * 109.47146 * 90.00140 * 20 19 18
22 22 C 1.81403 * 102.99947 * 180.02562 * 21 20 19
23 23 C 1.53003 * 109.47143 * 180.02562 * 22 21 20
24 24 O 1.42895 * 109.46819 * 179.97438 * 23 22 21
25 25 C 1.38840 * 118.49685 * 0.02562 * 19 18 17
26 26 C 1.38072 * 119.30763 * 359.97438 * 25 19 18
27 27 N 1.31940 * 120.84983 * 359.72309 * 26 25 19
28 28 H 0.96997 * 119.99979 * 0.02562 * 1 2 3
29 29 H 1.08998 * 109.47564 * 300.00208 * 9 7 2
30 30 H 1.09009 * 109.47207 * 60.00617 * 9 7 2
31 31 H 1.08999 * 109.47602 * 300.00034 * 10 9 7
32 32 H 1.08997 * 109.47294 * 60.00303 * 10 9 7
33 33 H 1.00902 * 110.99960 * 60.00605 * 13 11 10
34 34 H 1.00896 * 111.00165 * 183.95716 * 13 11 10
35 35 H 0.96998 * 119.99826 * 354.92156 * 16 14 11
36 36 H 1.07999 * 120.45007 * 0.02690 * 18 17 16
37 37 H 1.09000 * 109.47014 * 210.00390 * 20 19 18
38 38 H 1.08996 * 109.46554 * 330.00225 * 20 19 18
39 39 H 1.09002 * 109.46862 * 299.99706 * 22 21 20
40 40 H 1.08996 * 109.47417 * 59.99282 * 22 21 20
41 41 H 1.09002 * 109.46974 * 299.99604 * 23 22 21
42 42 H 1.09005 * 109.47042 * 59.99606 * 23 22 21
43 43 H 0.96699 * 114.00054 * 180.02562 * 24 23 22
44 44 H 1.07999 * 120.34753 * 180.02562 * 25 19 18
45 45 H 1.08004 * 119.57685 * 179.97438 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 0.0040
9 6 1.2510 -2.4991 -0.0005
10 6 2.2453 -3.6620 -0.0005
11 6 1.4803 -4.9871 -0.0012
12 1 0.7878 -5.0072 0.8404
13 7 0.7289 -5.1182 -1.2566
14 6 2.4548 -6.1299 0.1227
15 8 2.7869 -6.7531 -0.8632
16 7 2.9574 -6.4593 1.3291
17 6 3.7751 -7.5806 1.4610
18 6 4.2037 -7.9758 2.7233
19 6 5.0144 -9.0908 2.8401
20 6 5.5010 -9.5519 4.1898
21 16 4.3112 -10.7271 4.8925
22 6 5.0585 -11.1595 6.4879
23 6 4.1606 -12.1614 7.2167
24 8 4.7496 -12.5024 8.4732
25 6 5.3705 -9.7748 1.6855
26 6 4.9082 -9.3260 0.4643
27 7 4.1313 -8.2626 0.3843
28 1 -0.4850 0.8400 -0.0004
29 1 0.6247 -2.5571 0.8896
30 1 0.6240 -2.5567 -0.8904
31 1 2.8720 -3.6044 -0.8905
32 1 2.8719 -3.6043 0.8894
33 1 1.3490 -5.1023 -2.0524
34 1 0.1646 -5.9546 -1.2546
35 1 2.7501 -5.9161 2.1056
36 1 3.9072 -7.4204 3.6008
37 1 6.4704 -10.0381 4.0799
38 1 5.5986 -8.6929 4.8536
39 1 6.0390 -11.6055 6.3209
40 1 5.1669 -10.2602 7.0940
41 1 3.1799 -11.7159 7.3837
42 1 4.0527 -13.0607 6.6103
43 1 4.2334 -13.1356 8.9906
44 1 6.0017 -10.6493 1.7421
45 1 5.1828 -9.8545 -0.4366
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000516968742.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:50
Heat of formation + Delta-G solvation = -51.660655 kcal
Electronic energy + Delta-G solvation = -25468.118840 eV
Core-core repulsion = 21611.721751 eV
Total energy + Delta-G solvation = -3856.397089 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.96509 -39.34688 -37.56056 -35.53508 -34.96914 -34.04217 -32.81374 -31.56697
-30.40104 -30.07805 -28.47522 -26.56457 -24.28236 -23.83532 -23.33563 -22.14906
-20.52490 -19.80072 -18.32238 -18.03875 -17.29200 -16.56505 -16.27789 -16.23101
-16.12960 -15.97921 -15.44977 -15.10280 -14.98378 -14.87603 -14.45890 -14.19422
-14.12802 -13.69748 -13.53905 -13.36916 -12.96805 -12.87348 -12.34805 -12.20093
-12.11170 -12.03805 -11.59278 -10.92703 -10.89217 -10.74276 -10.64414 -10.64209
-10.56395 -10.31753 -9.83802 -9.76005 -9.47344 -9.30508 -9.01545 -8.44906
-8.36404 -8.22754 -8.20418 -5.95233 -3.97492 0.46364 0.90905 1.44083
2.00936 2.74103 2.82910 3.34150 3.40482 3.43133 3.73196 3.77838
3.99453 4.22698 4.27691 4.39200 4.46627 4.49481 4.73125 4.78214
4.81129 4.83540 4.97332 4.99035 5.08388 5.16632 5.16914 5.40231
5.44454 5.46936 5.56535 5.76392 5.91960 6.10420 6.37238 6.56295
6.63980 6.97044 7.02149 7.10841 7.40880 7.73707 7.75281 7.90810
7.94419 8.11053 8.27528 8.46512 9.10405 9.65785 11.15593
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014009 B = 0.001866 C = 0.001742
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1998.259180 B =14999.320288 C =16066.838337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.058 3.942
3 Si 0.889 3.111
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.523 4.523
8 H 0.052 0.948
9 C 0.031 3.969
10 C -0.097 4.097
11 C 0.081 3.919
12 H 0.101 0.899
13 N -0.805 5.805
14 C 0.474 3.526
15 O -0.483 6.483
16 N -0.661 5.661
17 C 0.369 3.631
18 C -0.193 4.193
19 C -0.008 4.008
20 C -0.045 4.045
21 S -0.225 6.225
22 C -0.099 4.099
23 C 0.093 3.907
24 O -0.572 6.572
25 C -0.194 4.194
26 C 0.134 3.866
27 N -0.473 5.473
28 H 0.259 0.741
29 H 0.014 0.986
30 H 0.036 0.964
31 H 0.055 0.945
32 H 0.053 0.947
33 H 0.349 0.651
34 H 0.335 0.665
35 H 0.420 0.580
36 H 0.139 0.861
37 H 0.098 0.902
38 H 0.098 0.902
39 H 0.089 0.911
40 H 0.090 0.910
41 H 0.057 0.943
42 H 0.057 0.943
43 H 0.386 0.614
44 H 0.135 0.865
45 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.936 -26.607 13.533 31.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.143 4.143
3 Si 0.717 3.283
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.562 4.562
8 H 0.070 0.930
9 C -0.006 4.006
10 C -0.135 4.135
11 C -0.035 4.035
12 H 0.119 0.881
13 N -0.332 5.332
14 C 0.259 3.741
15 O -0.352 6.352
16 N -0.308 5.308
17 C 0.137 3.863
18 C -0.218 4.218
19 C -0.017 4.017
20 C -0.192 4.192
21 S 0.002 5.998
22 C -0.247 4.247
23 C 0.014 3.986
24 O -0.379 6.379
25 C -0.217 4.217
26 C -0.024 4.024
27 N -0.188 5.188
28 H 0.069 0.931
29 H 0.032 0.968
30 H 0.054 0.946
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.163 0.837
34 H 0.147 0.853
35 H 0.257 0.743
36 H 0.156 0.844
37 H 0.117 0.883
38 H 0.116 0.884
39 H 0.108 0.892
40 H 0.109 0.891
41 H 0.076 0.924
42 H 0.075 0.925
43 H 0.234 0.766
44 H 0.153 0.847
45 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 8.770 -25.838 11.533 29.623
hybrid contribution 2.001 0.076 1.896 2.757
sum 10.771 -25.762 13.428 30.984
Atomic orbital electron populations
1.69968 1.05939 1.26439 1.50752 1.24987 0.94808 0.99054 0.95451
0.86650 0.79795 0.83749 0.78096 1.20701 1.21285 1.20037 1.21271
0.92907 0.91306 1.50704 0.92977 1.19023 0.93533 0.89755 0.98305
1.21693 0.98905 0.92094 1.00799 1.21905 0.93322 0.92870 0.95436
0.88107 1.59005 1.26751 1.44347 1.03147 1.23188 0.82380 0.86325
0.82241 1.90755 1.57136 1.51576 1.35758 1.44035 1.47621 1.25961
1.13206 1.18590 0.90279 0.88197 0.89194 1.21343 1.03214 1.00149
0.97107 1.19191 0.95394 0.93839 0.93291 1.22283 0.99911 1.00785
0.96259 1.87149 1.35011 1.57723 1.19891 1.23273 1.02424 1.02913
0.96105 1.21704 0.94995 0.97020 0.84845 1.86437 1.52525 1.67226
1.31715 1.21891 1.04638 1.02327 0.92867 1.22685 0.91168 0.91246
0.97288 1.67727 1.13218 1.07544 1.30274 0.93081 0.96800 0.94561
0.92667 0.92837 0.83663 0.85277 0.74253 0.84363 0.88349 0.88369
0.89217 0.89127 0.92429 0.92518 0.76590 0.84682 0.82309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16
4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16
8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16
9 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16
10 C -0.10 -1.91 4.78 -26.73 -0.13 -2.03 16
11 C 0.08 1.32 3.15 -68.87 -0.22 1.10 16
12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16
13 N -0.80 -13.37 8.44 -5.66 -0.05 -13.42 16
14 C 0.47 7.55 7.03 -10.99 -0.08 7.48 16
15 O -0.48 -9.11 14.51 5.56 0.08 -9.03 16
16 N -0.66 -8.68 5.39 -11.43 -0.06 -8.74 16
17 C 0.37 4.93 7.42 -154.71 -1.15 3.78 16
18 C -0.19 -1.97 9.64 -39.24 -0.38 -2.35 16
19 C -0.01 -0.07 5.17 -104.35 -0.54 -0.61 16
20 C -0.04 -0.30 6.12 36.01 0.22 -0.08 16
21 S -0.23 -1.72 21.72 -107.50 -2.33 -4.05 16
22 C -0.10 -0.60 6.31 37.16 0.23 -0.37 16
23 C 0.09 0.52 7.05 37.16 0.26 0.78 16
24 O -0.57 -3.38 13.66 -35.23 -0.48 -3.86 16
25 C -0.19 -1.75 9.81 -39.42 -0.39 -2.14 16
26 C 0.13 1.51 11.17 -17.57 -0.20 1.32 16
27 N -0.47 -7.05 7.89 -12.37 -0.10 -7.14 16
28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.04 0.99 7.75 -51.92 -0.40 0.59 16
31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16
32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
33 H 0.35 5.91 8.58 -39.29 -0.34 5.57 16
34 H 0.34 4.86 9.06 -39.29 -0.36 4.51 16
35 H 0.42 4.23 8.70 -40.82 -0.36 3.88 16
36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16
37 H 0.10 0.51 8.10 -51.92 -0.42 0.09 16
38 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16
39 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16
40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16
41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
43 H 0.39 0.53 9.12 45.56 0.42 0.95 16
44 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16
45 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16
LS Contribution 397.62 15.07 5.99 5.99
Total: -1.00 -36.23 397.62 -10.20 -46.44
By element:
Atomic # 1 Polarization: 15.11 SS G_CDS: -6.07 Total: 9.04 kcal
Atomic # 6 Polarization: -2.99 SS G_CDS: -2.90 Total: -5.89 kcal
Atomic # 7 Polarization: -55.79 SS G_CDS: 0.53 Total: -55.26 kcal
Atomic # 8 Polarization: -12.49 SS G_CDS: -0.40 Total: -12.89 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Atomic # 16 Polarization: -1.72 SS G_CDS: -2.33 Total: -4.05 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -36.23 -10.20 -46.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000516968742.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.223 kcal
(2) G-P(sol) polarization free energy of solvation -36.232 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.661 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds