Wall clock time and date at job start Tue Mar 31 2020 22:35:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86798 * 120.00163 * 2 1
4 4 H 1.48507 * 109.47298 * 269.99929 * 3 2 1
5 5 H 1.48503 * 109.47108 * 29.99879 * 3 2 1
6 6 H 1.48499 * 109.47414 * 150.00053 * 3 2 1
7 7 C 1.37881 * 120.00048 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00091 * 180.27965 * 7 2 1
9 9 C 1.50694 * 119.99848 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46970 * 180.02562 * 9 7 2
11 11 C 1.53004 * 109.47299 * 180.02562 * 10 9 7
12 12 H 1.09003 * 109.46617 * 305.00239 * 11 10 9
13 13 N 1.46893 * 109.47357 * 64.99652 * 11 10 9
14 14 C 1.50697 * 109.47442 * 185.00231 * 11 10 9
15 15 O 1.21275 * 119.99809 * 259.99606 * 14 11 10
16 16 N 1.34779 * 120.00328 * 79.99340 * 14 11 10
17 17 C 1.39405 * 120.00011 * 174.91950 * 16 14 11
18 18 C 1.39036 * 119.69468 * 185.07202 * 17 16 14
19 19 C 1.38352 * 119.10241 * 179.97438 * 18 17 16
20 20 C 1.50707 * 120.75573 * 179.97438 * 19 18 17
21 21 S 1.81396 * 109.47146 * 90.00140 * 20 19 18
22 22 C 1.81403 * 102.99947 * 180.02562 * 21 20 19
23 23 C 1.53003 * 109.47143 * 180.02562 * 22 21 20
24 24 O 1.42895 * 109.46819 * 179.97438 * 23 22 21
25 25 C 1.38840 * 118.49685 * 0.02562 * 19 18 17
26 26 C 1.38072 * 119.30763 * 359.97438 * 25 19 18
27 27 N 1.31940 * 120.84983 * 359.72309 * 26 25 19
28 28 H 0.96997 * 119.99979 * 0.02562 * 1 2 3
29 29 H 1.08998 * 109.47564 * 300.00208 * 9 7 2
30 30 H 1.09009 * 109.47207 * 60.00617 * 9 7 2
31 31 H 1.08999 * 109.47602 * 300.00034 * 10 9 7
32 32 H 1.08997 * 109.47294 * 60.00303 * 10 9 7
33 33 H 1.00902 * 110.99960 * 60.00605 * 13 11 10
34 34 H 1.00896 * 111.00165 * 183.95716 * 13 11 10
35 35 H 0.96998 * 119.99826 * 354.92156 * 16 14 11
36 36 H 1.07999 * 120.45007 * 0.02690 * 18 17 16
37 37 H 1.09000 * 109.47014 * 210.00390 * 20 19 18
38 38 H 1.08996 * 109.46554 * 330.00225 * 20 19 18
39 39 H 1.09002 * 109.46862 * 299.99706 * 22 21 20
40 40 H 1.08996 * 109.47417 * 59.99282 * 22 21 20
41 41 H 1.09002 * 109.46974 * 299.99604 * 23 22 21
42 42 H 1.09005 * 109.47042 * 59.99606 * 23 22 21
43 43 H 0.96699 * 114.00054 * 180.02562 * 24 23 22
44 44 H 1.07999 * 120.34753 * 180.02562 * 25 19 18
45 45 H 1.08004 * 119.57685 * 179.97438 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 0.0040
9 6 1.2510 -2.4991 -0.0005
10 6 2.2453 -3.6620 -0.0005
11 6 1.4803 -4.9871 -0.0012
12 1 0.7878 -5.0072 0.8404
13 7 0.7289 -5.1182 -1.2566
14 6 2.4548 -6.1299 0.1227
15 8 2.7869 -6.7531 -0.8632
16 7 2.9574 -6.4593 1.3291
17 6 3.7751 -7.5806 1.4610
18 6 4.2037 -7.9758 2.7233
19 6 5.0144 -9.0908 2.8401
20 6 5.5010 -9.5519 4.1898
21 16 4.3112 -10.7271 4.8925
22 6 5.0585 -11.1595 6.4879
23 6 4.1606 -12.1614 7.2167
24 8 4.7496 -12.5024 8.4732
25 6 5.3705 -9.7748 1.6855
26 6 4.9082 -9.3260 0.4643
27 7 4.1313 -8.2626 0.3843
28 1 -0.4850 0.8400 -0.0004
29 1 0.6247 -2.5571 0.8896
30 1 0.6240 -2.5567 -0.8904
31 1 2.8720 -3.6044 -0.8905
32 1 2.8719 -3.6043 0.8894
33 1 1.3490 -5.1023 -2.0524
34 1 0.1646 -5.9546 -1.2546
35 1 2.7501 -5.9161 2.1056
36 1 3.9072 -7.4204 3.6008
37 1 6.4704 -10.0381 4.0799
38 1 5.5986 -8.6929 4.8536
39 1 6.0390 -11.6055 6.3209
40 1 5.1669 -10.2602 7.0940
41 1 3.1799 -11.7159 7.3837
42 1 4.0527 -13.0607 6.6103
43 1 4.2334 -13.1356 8.9906
44 1 6.0017 -10.6493 1.7421
45 1 5.1828 -9.8545 -0.4366
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000516968742.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:49
Heat of formation + Delta-G solvation = -79.039469 kcal
Electronic energy + Delta-G solvation = -25469.306074 eV
Core-core repulsion = 21611.721751 eV
Total energy + Delta-G solvation = -3857.584323 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.94330 -40.43992 -37.95378 -36.91557 -36.17318 -34.90313 -34.74759 -31.99430
-31.94408 -31.24995 -29.13511 -28.20194 -25.86722 -24.51288 -24.05727 -23.31567
-22.04566 -21.02842 -19.15043 -18.71308 -18.44811 -18.17440 -17.23285 -17.16948
-16.81461 -16.71704 -16.53384 -16.45765 -16.15344 -15.94348 -15.37844 -15.29351
-15.07809 -14.82892 -14.31285 -14.28524 -14.22557 -13.82863 -13.51594 -13.42662
-13.41346 -12.86856 -12.81080 -12.53618 -12.51247 -12.27487 -11.85955 -11.79505
-11.66904 -11.29009 -11.23747 -11.05431 -11.02663 -10.49738 -10.49452 -10.31767
-9.61087 -9.32985 -8.76437 -8.13240 -6.23240 -0.18654 0.05866 0.81730
1.42103 1.43333 1.46103 1.53608 1.59683 1.82419 2.44904 2.89959
3.19914 3.28134 3.40118 3.43659 3.57856 3.71582 3.86838 3.96013
4.07820 4.08797 4.09508 4.09871 4.28857 4.38806 4.40823 4.46993
4.68311 4.72993 4.76090 4.76369 4.78883 4.93447 5.16446 5.24420
5.27138 5.58117 5.72766 5.85232 5.99408 6.02422 6.18599 6.30975
6.47901 6.78803 6.89383 6.95407 7.26174 7.44738 8.97822
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014009 B = 0.001866 C = 0.001742
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1998.259180 B =14999.320288 C =16066.838337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.002 3.998
3 Si 0.958 3.042
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.264 1.264
7 C -0.544 4.544
8 H 0.055 0.945
9 C 0.039 3.961
10 C -0.083 4.083
11 C 0.090 3.910
12 H 0.117 0.883
13 N -0.816 5.816
14 C 0.481 3.519
15 O -0.517 6.517
16 N -0.652 5.652
17 C 0.338 3.662
18 C -0.185 4.185
19 C -0.009 4.009
20 C -0.037 4.037
21 S -0.258 6.258
22 C -0.090 4.090
23 C 0.093 3.907
24 O -0.589 6.589
25 C -0.178 4.178
26 C 0.114 3.886
27 N -0.518 5.518
28 H 0.262 0.738
29 H -0.002 1.002
30 H 0.006 0.994
31 H 0.041 0.959
32 H 0.069 0.931
33 H 0.346 0.654
34 H 0.347 0.653
35 H 0.433 0.567
36 H 0.161 0.839
37 H 0.118 0.882
38 H 0.112 0.888
39 H 0.094 0.906
40 H 0.091 0.909
41 H 0.058 0.942
42 H 0.061 0.939
43 H 0.404 0.596
44 H 0.165 0.835
45 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.756 -27.497 15.431 33.651
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.196 4.196
3 Si 0.784 3.216
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.188 1.188
7 C -0.582 4.582
8 H 0.073 0.927
9 C 0.001 3.999
10 C -0.121 4.121
11 C -0.026 4.026
12 H 0.134 0.866
13 N -0.345 5.345
14 C 0.266 3.734
15 O -0.389 6.389
16 N -0.300 5.300
17 C 0.107 3.893
18 C -0.210 4.210
19 C -0.019 4.019
20 C -0.184 4.184
21 S -0.031 6.031
22 C -0.238 4.238
23 C 0.014 3.986
24 O -0.399 6.399
25 C -0.201 4.201
26 C -0.043 4.043
27 N -0.233 5.233
28 H 0.071 0.929
29 H 0.016 0.984
30 H 0.025 0.975
31 H 0.060 0.940
32 H 0.088 0.912
33 H 0.160 0.840
34 H 0.160 0.840
35 H 0.273 0.727
36 H 0.178 0.822
37 H 0.136 0.864
38 H 0.130 0.870
39 H 0.113 0.887
40 H 0.110 0.890
41 H 0.077 0.923
42 H 0.079 0.921
43 H 0.255 0.745
44 H 0.183 0.817
45 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges 10.602 -26.763 13.482 31.787
hybrid contribution 1.463 0.227 1.380 2.024
sum 12.065 -26.537 14.862 32.721
Atomic orbital electron populations
1.70097 1.07574 1.27480 1.51709 1.25881 0.95696 1.02952 0.95023
0.85554 0.78773 0.79070 0.78252 1.20287 1.20729 1.18825 1.21732
0.93359 0.92757 1.50373 0.92652 1.18838 0.93870 0.91179 0.95981
1.21415 0.97771 0.91972 1.00931 1.21690 0.93444 0.91533 0.95917
0.86558 1.58999 1.27032 1.45248 1.03200 1.22821 0.82015 0.85838
0.82726 1.90740 1.58267 1.52786 1.37074 1.43788 1.47273 1.26303
1.12659 1.18799 0.91680 0.88648 0.90174 1.21573 1.02468 1.00423
0.96530 1.19501 0.94606 0.93197 0.94567 1.22300 1.00116 1.01135
0.94843 1.87279 1.36172 1.58260 1.21360 1.23241 1.02481 1.03106
0.94955 1.21698 0.94858 0.97131 0.84874 1.86385 1.53462 1.68051
1.32016 1.22211 1.03448 1.02454 0.91965 1.23034 0.91297 0.90934
0.99022 1.67594 1.14727 1.09120 1.31908 0.92947 0.98409 0.97518
0.93978 0.91205 0.84048 0.83975 0.72736 0.82178 0.86369 0.86996
0.88748 0.89041 0.92344 0.92089 0.74530 0.81727 0.80913
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16
2 C 0.00 0.14 5.46 84.66 0.46 0.60 16
3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16
4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16
7 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16
8 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16
9 C 0.04 1.98 4.86 29.85 0.15 2.12 16
10 C -0.08 -3.28 4.78 30.60 0.15 -3.13 16
11 C 0.09 2.96 3.15 44.17 0.14 3.10 16
12 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16
13 N -0.82 -27.71 8.44 -171.81 -1.45 -29.16 16
14 C 0.48 15.38 7.03 87.66 0.62 15.99 16
15 O -0.52 -19.87 14.51 -3.01 -0.04 -19.92 16
16 N -0.65 -16.73 5.39 -308.46 -1.66 -18.39 16
17 C 0.34 8.77 7.42 132.92 0.99 9.76 16
18 C -0.18 -3.44 9.64 22.49 0.22 -3.22 16
19 C -0.01 -0.14 5.17 -19.69 -0.10 -0.24 16
20 C -0.04 -0.37 6.12 71.24 0.44 0.07 16
21 S -0.26 -3.35 21.72 -56.49 -1.23 -4.58 16
22 C -0.09 -0.90 6.31 71.98 0.45 -0.44 16
23 C 0.09 0.87 7.05 71.98 0.51 1.38 16
24 O -0.59 -5.91 13.66 -148.98 -2.03 -7.95 16
25 C -0.18 -2.80 9.81 22.37 0.22 -2.58 16
26 C 0.11 2.48 11.17 84.64 0.95 3.42 16
27 N -0.52 -15.39 7.89 -193.04 -1.52 -16.91 16
28 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16
29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16
30 H 0.01 0.36 7.75 -2.38 -0.02 0.35 16
31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
33 H 0.35 12.10 8.58 -89.69 -0.77 11.33 16
34 H 0.35 10.22 9.06 -89.70 -0.81 9.41 16
35 H 0.43 8.22 8.70 -92.71 -0.81 7.42 16
36 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16
37 H 0.12 0.76 8.10 -2.39 -0.02 0.74 16
38 H 0.11 0.86 8.10 -2.39 -0.02 0.84 16
39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
41 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
42 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16
43 H 0.40 0.45 9.12 -74.06 -0.68 -0.23 16
44 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16
45 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16
Total: -1.00 -79.01 397.62 -2.24 -81.25
By element:
Atomic # 1 Polarization: 31.02 SS G_CDS: -2.02 Total: 29.00 kcal
Atomic # 6 Polarization: -9.08 SS G_CDS: 5.41 Total: -3.67 kcal
Atomic # 7 Polarization: -116.17 SS G_CDS: -4.35 Total: -120.52 kcal
Atomic # 8 Polarization: -25.78 SS G_CDS: -2.08 Total: -27.86 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal
Atomic # 16 Polarization: -3.35 SS G_CDS: -1.23 Total: -4.58 kcal
Total: -79.01 -2.24 -81.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000516968742.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.212 kcal
(2) G-P(sol) polarization free energy of solvation -79.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.243 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds