Wall clock time and date at job start Tue Mar 31 2020 22:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 120.00079 * 2 1 4 4 H 1.48501 * 109.47048 * 270.00312 * 3 2 1 5 5 H 1.48504 * 109.46971 * 30.00102 * 3 2 1 6 6 H 1.48497 * 109.47237 * 150.00059 * 3 2 1 7 7 C 1.40032 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99947 * 189.84279 * 7 2 1 9 9 C 1.41538 * 120.00051 * 9.84041 * 7 2 1 10 10 C 1.41179 * 120.99836 * 206.24494 * 9 7 2 11 11 C 1.37587 * 119.02357 * 180.02562 * 10 9 7 12 12 N 1.32076 * 121.11052 * 0.02562 * 11 10 9 13 13 C 1.32482 * 122.22917 * 359.97438 * 12 11 10 14 14 N 1.39388 * 119.58084 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99984 * 354.67115 * 14 13 12 16 16 O 1.21588 * 119.99724 * 354.89269 * 15 14 13 17 17 C 1.47487 * 119.99822 * 174.89090 * 15 14 13 18 18 C 1.39759 * 120.77015 * 359.72248 * 17 15 14 19 19 C 1.38887 * 118.87261 * 179.77787 * 18 17 15 20 20 C 1.37854 * 119.43475 * 0.34248 * 19 18 17 21 21 N 1.32759 * 120.42992 * 359.95384 * 20 19 18 22 22 C 1.31859 * 122.58305 * 359.90622 * 21 20 19 23 23 O 1.35420 * 119.88981 * 179.91340 * 22 21 20 24 24 C 1.50796 * 122.25470 * 180.20392 * 20 19 18 25 25 C 1.52692 * 110.59477 * 342.04043 * 24 20 19 26 26 C 1.53319 * 108.42398 * 51.40164 * 25 24 20 27 27 C 1.50549 * 117.76291 * 179.89202 * 19 18 17 28 28 C 1.38626 * 120.84046 * 0.02562 * 13 12 11 29 29 H 0.96996 * 119.99549 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.48730 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.44169 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99747 * 174.67417 * 14 13 12 33 33 H 1.07996 * 120.56357 * 0.02562 * 18 17 15 34 34 H 0.96705 * 113.99819 * 270.02247 * 23 22 21 35 35 H 1.09001 * 109.25200 * 102.33306 * 24 20 19 36 36 H 1.09007 * 109.25076 * 221.78805 * 24 20 19 37 37 H 1.09003 * 109.67394 * 171.13663 * 25 24 20 38 38 H 1.08995 * 109.67572 * 291.66302 * 25 24 20 39 39 H 1.08992 * 109.69297 * 49.75804 * 26 25 24 40 40 H 1.09007 * 109.68905 * 170.33451 * 26 25 24 41 41 H 1.08999 * 109.25130 * 42.62581 * 27 19 18 42 42 H 1.08991 * 109.24966 * 283.19183 * 27 19 18 43 43 H 1.07992 * 120.60916 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0756 -1.2197 0.1593 9 6 1.3155 -2.4294 -0.2106 10 6 1.8138 -3.6471 0.3013 11 6 1.1083 -4.8059 0.0725 12 7 -0.0196 -4.7938 -0.6146 13 6 -0.5296 -3.6785 -1.1159 14 7 -1.7237 -3.7295 -1.8330 15 6 -2.2961 -4.9190 -2.1051 16 8 -1.7256 -5.9505 -1.8071 17 6 -3.6146 -4.9693 -2.7642 18 6 -4.2872 -3.7936 -3.1085 19 6 -5.5247 -3.8870 -3.7321 20 6 -6.0615 -5.1303 -3.9894 21 7 -5.4034 -6.2310 -3.6462 22 6 -4.2253 -6.1987 -3.0549 23 8 -3.6028 -7.3558 -2.7269 24 6 -7.3973 -5.3056 -4.6668 25 6 -8.2069 -4.0126 -4.6007 26 6 -7.3300 -2.8650 -5.1152 27 6 -6.2283 -2.6049 -4.0896 28 6 0.1099 -2.4616 -0.9373 29 1 -0.4849 0.8401 0.0004 30 1 2.7354 -3.6686 0.8642 31 1 1.4831 -5.7412 0.4614 32 1 -2.1427 -2.9090 -2.1363 33 1 -3.8503 -2.8289 -2.8968 34 1 -3.8188 -7.6815 -1.8424 35 1 -7.2382 -5.5771 -5.7104 36 1 -7.9511 -6.1017 -4.1689 37 1 -9.0957 -4.1038 -5.2251 38 1 -8.5009 -3.8161 -3.5697 39 1 -6.8846 -3.1429 -6.0703 40 1 -7.9356 -1.9672 -5.2392 41 1 -5.5064 -1.9033 -4.5077 42 1 -6.6685 -2.1739 -3.1905 43 1 -0.3094 -1.5547 -1.3472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532434817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:29 Heat of formation + Delta-G solvation = -33.981888 kcal Electronic energy + Delta-G solvation = -28269.943071 eV Core-core repulsion = 24278.868640 eV Total energy + Delta-G solvation = -3991.074431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22800 -41.00967 -39.59023 -38.77531 -36.62507 -36.13446 -35.59462 -34.49442 -32.47763 -31.58370 -30.54612 -30.07684 -27.93051 -25.83219 -24.84842 -23.88972 -23.82606 -23.20099 -21.82590 -20.79562 -19.72047 -19.48303 -18.76921 -18.07313 -17.36524 -17.11119 -16.94911 -16.18749 -16.07780 -16.05471 -15.63719 -15.60880 -15.19504 -14.80332 -14.74881 -14.54132 -14.37026 -14.26854 -14.13592 -13.88936 -13.55566 -13.17752 -12.88793 -12.81023 -12.71287 -12.52387 -12.13236 -11.88991 -11.80908 -11.70983 -11.63679 -11.54611 -11.21296 -11.16984 -10.85762 -10.53812 -9.95178 -9.73086 -9.64472 -8.91027 -8.59452 -6.58937 -0.57731 -0.05134 0.77335 0.98768 1.42161 1.54148 1.56123 1.85389 1.93553 2.20800 2.38399 2.63002 2.83272 3.27850 3.48155 3.54042 3.71031 3.72514 3.87708 4.06332 4.08358 4.20286 4.34813 4.44777 4.59690 4.64066 4.67805 4.74054 4.77707 4.82667 4.90264 4.98947 5.05872 5.06479 5.17344 5.23578 5.25963 5.29459 5.45310 5.48896 5.50394 5.58898 5.90601 6.09984 6.39973 6.49287 6.53197 6.74624 6.77336 6.82885 7.17734 7.78208 8.28705 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002931 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.186902 B = 9549.856392 C =11529.842713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.294 4.294 11 C 0.112 3.888 12 N -0.579 5.579 13 C 0.332 3.668 14 N -0.646 5.646 15 C 0.546 3.454 16 O -0.501 6.501 17 C -0.217 4.217 18 C -0.028 4.028 19 C -0.138 4.138 20 C 0.174 3.826 21 N -0.529 5.529 22 C 0.356 3.644 23 O -0.478 6.478 24 C -0.071 4.071 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.077 4.077 28 C -0.253 4.253 29 H 0.292 0.708 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.420 0.580 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.263 1.691 -9.105 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.318 4.318 11 C -0.041 4.041 12 N -0.299 5.299 13 C 0.107 3.893 14 N -0.294 5.294 15 C 0.333 3.667 16 O -0.373 6.373 17 C -0.224 4.224 18 C -0.053 4.053 19 C -0.140 4.140 20 C 0.038 3.962 21 N -0.249 5.249 22 C 0.174 3.826 23 O -0.288 6.288 24 C -0.109 4.109 25 C -0.153 4.153 26 C -0.158 4.158 27 C -0.114 4.114 28 C -0.279 4.279 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.168 0.832 32 H 0.258 0.742 33 H 0.181 0.819 34 H 0.277 0.723 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.654 -0.548 -9.724 21.044 hybrid contribution 1.398 1.970 1.048 2.633 sum -17.256 1.421 -8.676 19.366 Atomic orbital electron populations 1.69765 1.08824 1.30842 1.34694 1.26805 0.95742 1.04460 0.90888 0.85074 0.78874 0.75423 0.79583 1.18515 1.19035 1.18477 1.19870 0.96202 0.90882 1.44319 0.89886 1.18028 0.91178 0.93360 0.87036 1.22128 1.04883 0.94235 1.10572 1.22212 0.90183 0.97631 0.94122 1.67292 1.15899 1.28614 1.18072 1.18384 0.87282 0.90580 0.93091 1.43249 1.22267 1.09718 1.54119 1.18398 0.85335 0.83665 0.79321 1.90849 1.63323 1.33331 1.49836 1.20990 0.97174 0.95779 1.08449 1.22077 0.93569 0.97653 0.92043 1.20790 0.95043 0.97603 1.00520 1.21753 0.96065 0.86462 0.91936 1.67188 1.08300 1.34584 1.14828 1.19093 0.87009 0.85001 0.91493 1.84666 1.66950 1.37331 1.39828 1.20618 0.88857 1.00719 1.00681 1.21605 0.98337 0.92475 1.02861 1.21617 0.96461 0.99766 0.97932 1.20577 0.98295 0.91512 1.01061 1.21652 1.01369 0.95682 1.09148 0.89672 0.86477 0.83228 0.74157 0.81948 0.72347 0.88556 0.89158 0.88498 0.91136 0.91467 0.88798 0.89001 0.88731 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.81 10.70 21.84 0.23 -38.58 16 2 C 0.04 1.75 5.31 85.29 0.45 2.21 16 3 Si 0.99 35.25 29.57 68.60 2.03 37.28 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.48 -24.70 9.14 23.52 0.21 -24.48 16 8 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 9 C 0.11 5.98 5.60 -21.12 -0.12 5.86 16 10 C -0.29 -14.67 9.90 22.84 0.23 -14.45 16 11 C 0.11 5.49 11.15 84.50 0.94 6.43 16 12 N -0.58 -30.37 7.88 -193.57 -1.53 -31.90 16 13 C 0.33 16.53 7.40 132.78 0.98 17.51 16 14 N -0.65 -26.23 5.34 -311.57 -1.66 -27.89 16 15 C 0.55 22.31 7.72 86.68 0.67 22.98 16 16 O -0.50 -24.36 13.51 16.70 0.23 -24.14 16 17 C -0.22 -6.99 5.90 -19.97 -0.12 -7.11 16 18 C -0.03 -0.66 9.21 22.79 0.21 -0.45 16 19 C -0.14 -2.69 5.74 -19.85 -0.11 -2.81 16 20 C 0.17 3.78 6.63 42.36 0.28 4.06 16 21 N -0.53 -15.13 10.18 -296.22 -3.02 -18.15 16 22 C 0.36 11.59 7.78 85.19 0.66 12.25 16 23 O -0.48 -16.28 11.69 -66.46 -0.78 -17.06 16 24 C -0.07 -0.99 5.90 29.78 0.18 -0.81 16 25 C -0.12 -0.97 5.97 30.60 0.18 -0.79 16 26 C -0.12 -1.00 5.98 30.62 0.18 -0.81 16 27 C -0.08 -0.90 5.67 29.72 0.17 -0.73 16 28 C -0.25 -13.00 8.61 22.99 0.20 -12.80 16 29 H 0.29 12.34 8.29 -92.71 -0.77 11.57 16 30 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 31 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 32 H 0.42 13.74 6.82 -92.71 -0.63 13.10 16 33 H 0.16 3.08 6.52 -2.91 -0.02 3.06 16 34 H 0.42 10.93 9.06 -74.05 -0.67 10.25 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.61 8.10 -2.39 -0.02 0.59 16 39 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 40 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.09 0.92 8.13 -2.39 -0.02 0.91 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.13 6.62 6.11 -2.91 -0.02 6.60 16 Total: -1.00 -73.37 359.63 0.49 -72.87 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -0.21 Total: 41.49 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.20 Total: 6.06 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -5.97 Total: -116.52 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.55 Total: -41.19 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -73.37 0.49 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.891 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds