Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48505 * 109.46787 * 270.00019 * 3 2 1 5 5 H 1.48500 * 109.46740 * 29.99518 * 3 2 1 6 6 H 1.48497 * 109.47197 * 150.00017 * 3 2 1 7 7 C 1.37879 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00316 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00104 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47488 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.46142 * 175.00188 * 10 9 7 12 12 C 1.53193 * 109.31619 * 181.38707 * 11 10 9 13 13 N 1.46928 * 108.77080 * 305.36948 * 12 11 10 14 14 S 1.65603 * 120.62554 * 233.58091 * 13 12 11 15 15 O 1.42099 * 106.40290 * 336.46039 * 14 13 12 16 16 O 1.42101 * 106.40442 * 203.53791 * 14 13 12 17 17 C 1.76207 * 107.21859 * 90.00118 * 14 13 12 18 18 C 1.34559 * 126.57931 * 90.01851 * 17 14 13 19 19 N 1.34016 * 108.02830 * 179.75405 * 18 17 14 20 20 C 1.30908 * 109.29850 * 0.33560 * 19 18 17 21 21 N 1.34811 * 108.61224 * 359.81888 * 20 19 18 22 22 C 1.47004 * 111.17914 * 180.25346 * 21 20 19 23 23 C 1.54389 * 105.53342 * 342.89785 * 22 21 20 24 24 C 1.51568 * 141.44362 * 179.79899 * 20 19 18 25 25 C 1.46923 * 118.74431 * 53.85668 * 13 12 11 26 26 C 1.53040 * 109.45959 * 295.07138 * 10 9 7 27 27 H 0.96995 * 120.00275 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.46799 * 60.00200 * 9 7 2 29 29 H 1.09001 * 109.47165 * 300.01108 * 9 7 2 30 30 H 1.09002 * 109.45876 * 55.03084 * 10 9 7 31 31 H 1.09001 * 109.50142 * 61.43323 * 11 10 9 32 32 H 1.09002 * 109.52740 * 301.35345 * 11 10 9 33 33 H 1.08995 * 109.58672 * 185.57681 * 12 11 10 34 34 H 1.09005 * 109.70240 * 65.21754 * 12 11 10 35 35 H 1.08002 * 125.98991 * 0.02760 * 18 17 14 36 36 H 1.09008 * 110.23998 * 223.88375 * 22 21 20 37 37 H 1.09005 * 110.23535 * 101.91580 * 22 21 20 38 38 H 1.08996 * 110.96789 * 267.59526 * 23 22 21 39 39 H 1.09001 * 110.96794 * 143.83183 * 23 22 21 40 40 H 1.09001 * 110.47464 * 315.26673 * 24 20 19 41 41 H 1.08994 * 110.47599 * 77.75137 * 24 20 19 42 42 H 1.09003 * 109.58273 * 65.92325 * 25 13 12 43 43 H 1.08993 * 109.58888 * 186.35286 * 25 13 12 44 44 H 1.09003 * 109.49599 * 298.56666 * 26 10 9 45 45 H 1.08998 * 109.49758 * 58.62901 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5467 -2.6381 -0.1262 12 6 6.0508 -4.0843 -0.1606 13 7 5.5426 -4.7905 1.0233 14 16 6.5787 -5.5895 2.0384 15 8 7.7354 -5.8952 1.2718 16 8 5.8049 -6.5773 2.7054 17 6 7.0892 -4.4404 3.2728 18 6 6.4871 -4.2126 4.4544 19 7 7.1876 -3.2714 5.1022 20 6 8.2012 -2.9000 4.3617 21 7 8.1755 -3.6045 3.2126 22 6 9.2975 -3.2348 2.3377 23 6 9.8160 -1.8849 2.8785 24 6 9.3840 -1.9523 4.3607 25 6 4.0971 -4.7795 1.2862 26 6 3.6155 -3.3208 1.3074 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6797 0.8896 29 1 3.8745 -0.6807 -0.8904 30 1 3.5869 -3.1755 -0.8418 31 1 5.9831 -2.1210 0.7283 32 1 5.8366 -2.1299 -1.0459 33 1 7.1407 -4.0917 -0.1507 34 1 5.6902 -4.5778 -1.0632 35 1 5.5979 -4.7053 4.8191 36 1 8.9527 -3.1217 1.3098 37 1 10.0823 -3.9893 2.3919 38 1 9.3347 -1.0499 2.3695 39 1 10.9006 -1.8204 2.7910 40 1 9.0830 -0.9665 4.7154 41 1 10.1906 -2.3486 4.9775 42 1 3.5784 -5.3270 0.4991 43 1 3.8976 -5.2456 2.2510 44 1 4.0701 -2.7972 2.1485 45 1 2.5305 -3.2981 1.4082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568979248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = -11.565712 kcal Electronic energy + Delta-G solvation = -28769.175314 eV Core-core repulsion = 24914.516873 eV Total energy + Delta-G solvation = -3854.658442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.75328 -38.47870 -37.48780 -36.71888 -36.00854 -34.08170 -32.27223 -32.05290 -30.86758 -29.17725 -28.27746 -27.71756 -24.24438 -23.08393 -22.63940 -22.28059 -21.17348 -20.54183 -19.66655 -18.80680 -18.03002 -17.54626 -16.83152 -16.66799 -15.97881 -15.39522 -14.63753 -14.48336 -14.42944 -14.37386 -14.17449 -14.05636 -13.82741 -13.74725 -13.54035 -13.20103 -12.73609 -12.57490 -12.49132 -12.29421 -12.08991 -12.01278 -11.88706 -11.75671 -11.64281 -11.45580 -11.08416 -10.92770 -10.71043 -10.41375 -10.28295 -10.01842 -9.86493 -9.77431 -9.60705 -9.11319 -9.02410 -8.82900 -8.56186 -6.06789 -4.04200 0.21788 1.24811 2.26052 2.66429 2.91563 3.26634 3.35005 3.37393 3.40885 3.60157 3.92339 4.14828 4.22269 4.32294 4.42130 4.67085 4.88067 4.92522 4.98447 5.08198 5.13837 5.17365 5.23108 5.28304 5.32602 5.42821 5.45000 5.50071 5.67202 5.69761 5.73677 5.85485 6.02333 6.20657 6.26470 6.38572 6.49087 6.51281 6.61288 6.77230 6.82443 6.97867 7.20220 7.40243 7.63253 7.76956 8.51061 8.98146 9.56238 11.06507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004062 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.453172 B = 6890.814430 C = 7934.955038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.069 4.069 11 C -0.132 4.132 12 C 0.124 3.876 13 N -0.989 5.989 14 S 2.716 3.284 15 O -0.962 6.962 16 O -0.945 6.945 17 C -0.580 4.580 18 C 0.110 3.890 19 N -0.485 5.485 20 C 0.229 3.771 21 N -0.427 5.427 22 C 0.093 3.907 23 C -0.130 4.130 24 C -0.047 4.047 25 C 0.117 3.883 26 C -0.120 4.120 27 H 0.262 0.738 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.190 0.810 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.458 -6.647 4.471 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.088 4.088 11 C -0.171 4.171 12 C -0.001 4.001 13 N -0.829 5.829 14 S 2.802 3.198 15 O -0.952 6.952 16 O -0.935 6.935 17 C -0.774 4.774 18 C -0.047 4.047 19 N -0.204 5.204 20 C -0.036 4.036 21 N -0.108 5.108 22 C -0.028 4.028 23 C -0.168 4.168 24 C -0.086 4.086 25 C -0.007 4.007 26 C -0.159 4.159 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.207 0.793 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.459 -7.175 4.933 23.158 hybrid contribution 0.373 1.357 -0.368 1.455 sum 21.832 -5.818 4.565 23.051 Atomic orbital electron populations 1.69905 1.06251 1.26824 1.51226 1.25020 0.94671 0.99044 0.94701 0.86824 0.80343 0.83975 0.78362 1.20415 1.21462 1.19238 1.21131 0.89365 0.94368 1.50528 0.90748 1.19616 0.97287 0.91660 0.96044 1.20951 0.91802 0.98957 0.97097 1.22063 0.98637 0.94595 1.01821 1.21497 0.98035 0.93413 0.87196 1.57672 1.17960 1.70402 1.36827 1.01425 0.72949 0.73115 0.72310 1.93539 1.49516 1.82693 1.69445 1.93606 1.70288 1.53838 1.75753 1.33486 1.01644 1.21448 1.20843 1.22441 0.98857 0.94103 0.89263 1.70012 1.05268 1.14341 1.30774 1.24879 0.97340 0.96508 0.84865 1.45974 1.19212 1.27854 1.17719 1.22677 0.86972 0.98047 0.95126 1.22811 1.03217 0.96234 0.94535 1.20802 0.91858 0.98303 0.97619 1.21790 0.77651 0.99269 1.02032 1.21989 1.02833 0.92704 0.98384 0.92779 0.96843 0.97171 0.91523 0.92461 0.91113 0.90477 0.90490 0.79261 0.88245 0.88157 0.88789 0.87456 0.87696 0.87926 0.90497 0.89556 0.92399 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -13.93 8.94 -34.44 -0.31 -14.24 16 8 H 0.07 2.14 7.30 -52.48 -0.38 1.76 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 10 C -0.07 -1.24 2.10 -90.58 -0.19 -1.43 16 11 C -0.13 -1.88 5.36 -26.61 -0.14 -2.02 16 12 C 0.12 1.52 6.37 -3.71 -0.02 1.50 16 13 N -0.99 -13.14 3.28 -113.27 -0.37 -13.52 16 14 S 2.72 37.45 5.85 -107.50 -0.63 36.82 16 15 O -0.96 -14.24 16.73 -57.17 -0.96 -15.20 16 16 O -0.95 -14.79 16.57 -57.17 -0.95 -15.74 16 17 C -0.58 -7.96 7.28 -16.45 -0.12 -8.08 16 18 C 0.11 1.57 11.63 -17.90 -0.21 1.36 16 19 N -0.49 -7.26 11.26 -10.56 -0.12 -7.38 16 20 C 0.23 2.81 8.58 -154.86 -1.33 1.48 16 21 N -0.43 -5.13 3.61 -111.32 -0.40 -5.54 16 22 C 0.09 0.73 7.78 -3.04 -0.02 0.71 16 23 C -0.13 -0.65 7.17 -25.20 -0.18 -0.83 16 24 C -0.05 -0.32 6.86 -26.65 -0.18 -0.51 16 25 C 0.12 1.62 6.41 -3.49 -0.02 1.60 16 26 C -0.12 -2.02 5.21 -26.39 -0.14 -2.16 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.01 0.31 7.20 -51.92 -0.37 -0.06 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.83 7.13 -51.93 -0.37 0.46 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.10 7.12 -51.93 -0.37 0.73 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -35.88 369.45 -11.73 -47.60 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.91 Total: -1.71 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -3.06 Total: -21.10 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.12 Total: -52.92 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.90 Total: -30.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.63 Total: 36.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.88 -11.73 -47.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568979248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.039 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds