Wall clock time and date at job start Tue Mar 31 2020 22:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48506 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47485 * 300.00426 * 3 2 1 6 6 H 1.48506 * 109.46965 * 60.00713 * 3 2 1 7 7 C 1.37885 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47019 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46822 * 179.97438 * 10 9 7 12 12 C 1.39849 * 119.99690 * 179.97438 * 11 10 9 13 13 C 1.38947 * 120.04562 * 0.02562 * 12 11 10 14 14 C 1.38157 * 120.08808 * 179.97438 * 13 12 11 15 15 C 1.38199 * 120.16714 * 359.97438 * 14 13 12 16 16 N 1.48029 * 119.95785 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99705 * 359.97438 * 16 15 14 18 18 O 1.21799 * 120.00092 * 179.72323 * 16 15 14 19 19 C 1.38908 * 120.08565 * 0.24570 * 15 14 13 20 20 N 1.39855 * 120.04139 * 179.72393 * 19 15 14 21 21 C 1.47003 * 111.00193 * 243.63788 * 20 19 15 22 22 C 1.53097 * 109.26260 * 177.61086 * 21 20 19 23 23 O 1.43017 * 109.25634 * 56.84638 * 22 21 20 24 24 C 1.43021 * 113.73792 * 301.32989 * 23 22 21 25 25 C 1.47020 * 110.99697 * 120.00036 * 20 19 15 26 26 C 1.38871 * 120.04337 * 179.97438 * 12 11 10 27 27 F 1.35100 * 120.08384 * 0.04873 * 26 12 11 28 28 H 0.96994 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47252 * 60.00022 * 9 7 2 30 30 H 1.09001 * 109.47279 * 300.00566 * 9 7 2 31 31 H 1.09000 * 109.46717 * 60.00373 * 10 9 7 32 32 H 1.08995 * 109.47435 * 300.00100 * 10 9 7 33 33 H 0.96998 * 120.00003 * 0.02562 * 11 10 9 34 34 H 1.08008 * 119.95450 * 359.97438 * 13 12 11 35 35 H 1.07995 * 119.91370 * 179.97438 * 14 13 12 36 36 H 1.09010 * 109.50925 * 297.54497 * 21 20 19 37 37 H 1.09004 * 109.50905 * 57.67360 * 21 20 19 38 38 H 1.09007 * 109.50206 * 296.91415 * 22 21 20 39 39 H 1.08990 * 109.54867 * 176.80541 * 22 21 20 40 40 H 1.08991 * 109.51129 * 298.73777 * 24 23 22 41 41 H 1.08998 * 109.54059 * 178.62413 * 24 23 22 42 42 H 1.08999 * 109.50589 * 302.33135 * 25 20 19 43 43 H 1.09001 * 109.50192 * 62.41136 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.2122 -6.1419 -0.0027 13 6 3.6016 -6.1430 -0.0043 14 6 4.2933 -7.3389 -0.0052 15 6 3.6068 -8.5383 -0.0041 16 7 4.3526 -9.8170 -0.0057 17 8 5.5706 -9.8115 -0.0085 18 8 3.7483 -10.8745 0.0004 19 6 2.2177 -8.5455 -0.0072 20 7 1.5239 -9.7598 -0.0119 21 6 0.7361 -9.9117 -1.2437 22 6 0.0420 -11.2763 -1.2343 23 8 -0.7646 -11.3871 -0.0586 24 6 -0.0292 -11.2448 1.1598 25 6 0.6640 -9.8798 1.1746 26 6 1.5188 -7.3451 -0.0016 27 9 0.1678 -7.3482 0.0000 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8727 -3.6047 0.8878 32 1 2.8714 -3.6040 -0.8922 33 1 0.5429 -4.9308 -0.0005 34 1 4.1416 -5.2076 -0.0047 35 1 5.3733 -7.3364 -0.0068 36 1 -0.0139 -9.1223 -1.2958 37 1 1.3962 -9.8450 -2.1085 38 1 0.7929 -12.0665 -1.2364 39 1 -0.5883 -11.3709 -2.1184 40 1 0.7195 -12.0339 1.2273 41 1 -0.7107 -11.3160 2.0075 42 1 1.2717 -9.7899 2.0750 43 1 -0.0865 -9.0894 1.1616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570985881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:30 Heat of formation + Delta-G solvation = -50.639395 kcal Electronic energy + Delta-G solvation = -29939.860913 eV Core-core repulsion = 25517.294934 eV Total energy + Delta-G solvation = -4422.565980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.30323 -41.92780 -40.27594 -39.21511 -36.93128 -36.21415 -35.26041 -33.37904 -31.49680 -31.27973 -30.60446 -29.09956 -27.16181 -25.59911 -24.64056 -24.34666 -23.16870 -21.98166 -21.24237 -20.67588 -19.23165 -18.54555 -17.89175 -17.34792 -17.28307 -16.76169 -16.56479 -16.55206 -15.85875 -15.82996 -15.42272 -15.30776 -14.81291 -14.60700 -14.51462 -14.48312 -13.94884 -13.87785 -13.17683 -12.89978 -12.67176 -12.44632 -12.30636 -11.91253 -11.60846 -11.45204 -11.40531 -11.24664 -11.01707 -10.96582 -10.83039 -10.82869 -10.80121 -10.15483 -10.01345 -9.91043 -9.53504 -9.27991 -8.85494 -8.65210 -7.84018 -6.29676 -4.35071 0.01917 0.60013 1.51852 1.64363 3.01391 3.05005 3.14410 3.19965 3.23944 3.27855 3.61446 3.74146 4.23674 4.30768 4.49223 4.58386 4.63965 4.74569 4.84457 4.91964 4.98757 5.07820 5.15107 5.19985 5.25546 5.35150 5.51408 5.55011 5.58230 5.66479 5.72630 5.74324 5.82253 5.99046 6.28852 6.35469 6.51031 6.72023 6.85876 6.86857 7.27721 7.29635 7.41498 7.66447 7.98547 8.01383 8.70344 9.31521 10.81695 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002665 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.889113 B =10503.543601 C =11859.027473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.113 3.887 11 N -0.704 5.704 12 C 0.256 3.744 13 C -0.183 4.183 14 C -0.004 4.004 15 C -0.084 4.084 16 N 0.046 4.954 17 O -0.211 6.211 18 O -0.124 6.124 19 C 0.171 3.829 20 N -0.483 5.483 21 C 0.018 3.982 22 C 0.069 3.931 23 O -0.384 6.384 24 C 0.069 3.931 25 C 0.014 3.986 26 C -0.027 4.027 27 F -0.126 7.126 28 H 0.264 0.736 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.409 0.591 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -19.418 -0.064 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.009 4.009 11 N -0.324 5.324 12 C 0.140 3.860 13 C -0.207 4.207 14 C -0.024 4.024 15 C -0.172 4.172 16 N 0.563 4.437 17 O -0.412 6.412 18 O -0.349 6.349 19 C 0.073 3.927 20 N -0.205 5.205 21 C -0.108 4.108 22 C -0.008 4.008 23 O -0.302 6.302 24 C -0.008 4.008 25 C -0.112 4.112 26 C -0.054 4.054 27 F -0.105 7.105 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.157 -18.821 -0.061 18.944 hybrid contribution -0.317 1.550 -0.010 1.582 sum 1.839 -17.271 -0.070 17.369 Atomic orbital electron populations 1.69953 1.06183 1.27144 1.49526 1.25013 0.94914 0.99619 0.94645 0.86426 0.80033 0.83103 0.77825 1.19528 1.20790 1.20785 1.20984 0.93165 0.90088 1.52463 0.92078 1.19315 0.94125 0.90786 0.98256 1.22093 0.96854 0.81226 1.00726 1.45739 1.09821 1.03240 1.73640 1.18298 0.92395 0.85850 0.89472 1.20627 0.90921 0.99009 1.10151 1.20754 1.01747 0.88836 0.91111 1.20316 0.89505 0.84399 1.22994 1.43144 1.00639 1.02499 0.97437 1.94509 0.95766 1.94207 1.56694 1.94551 1.70297 1.18782 1.51302 1.18096 0.90872 0.88320 0.95396 1.60024 1.28993 1.27783 1.03704 1.22926 0.96700 0.99593 0.91626 1.22634 0.94628 0.95152 0.88403 1.87990 1.35097 1.93083 1.14044 1.22627 0.95731 0.95089 0.87345 1.22982 0.95926 0.99754 0.92588 1.17476 0.77690 0.92517 1.17738 1.91447 1.27345 1.96831 1.94878 0.92622 0.95735 0.95723 0.91863 0.91859 0.75473 0.82492 0.82436 0.92363 0.89477 0.91393 0.88126 0.91447 0.88132 0.89473 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -13.31 9.11 -34.44 -0.31 -13.62 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.11 1.88 4.85 -4.04 -0.02 1.86 16 11 N -0.70 -10.24 5.74 -58.59 -0.34 -10.57 16 12 C 0.26 3.35 6.66 -83.70 -0.56 2.79 16 13 C -0.18 -2.11 9.31 -39.35 -0.37 -2.48 16 14 C 0.00 -0.04 9.54 -39.63 -0.38 -0.42 16 15 C -0.08 -1.09 6.87 -79.71 -0.55 -1.64 16 16 N 0.05 0.67 4.45 34.08 0.15 0.82 16 17 O -0.21 -3.18 18.44 -29.46 -0.54 -3.73 16 18 O -0.12 -1.85 17.09 -29.46 -0.50 -2.35 16 19 C 0.17 2.18 4.73 -83.70 -0.40 1.79 16 20 N -0.48 -5.74 2.56 -170.75 -0.44 -6.18 16 21 C 0.02 0.19 5.34 -3.72 -0.02 0.17 16 22 C 0.07 0.65 7.01 37.21 0.26 0.91 16 23 O -0.38 -4.21 10.83 -35.23 -0.38 -4.59 16 24 C 0.07 0.65 7.01 37.21 0.26 0.91 16 25 C 0.01 0.15 5.30 -3.71 -0.02 0.13 16 26 C -0.03 -0.35 6.71 -39.10 -0.26 -0.61 16 27 F -0.13 -1.69 12.79 2.25 0.03 -1.66 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.02 7.95 -51.93 -0.41 0.60 16 32 H 0.06 1.02 7.95 -51.93 -0.41 0.60 16 33 H 0.41 5.98 7.96 -40.82 -0.32 5.65 16 34 H 0.16 1.62 6.73 -52.48 -0.35 1.27 16 35 H 0.16 1.48 7.60 -52.49 -0.40 1.08 16 36 H 0.06 0.68 6.42 -51.92 -0.33 0.34 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.71 6.11 -51.93 -0.32 0.40 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -28.72 360.92 -8.94 -37.66 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.48 Total: 2.74 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.60 Total: -8.57 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.12 Total: -39.94 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.43 Total: -10.67 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.03 Total: -1.66 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.72 -8.94 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570985881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.984 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds