Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48506 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47485 * 300.00426 * 3 2 1 6 6 H 1.48506 * 109.46965 * 60.00713 * 3 2 1 7 7 C 1.37885 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47019 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46822 * 179.97438 * 10 9 7 12 12 C 1.39849 * 119.99690 * 179.97438 * 11 10 9 13 13 C 1.38947 * 120.04562 * 0.02562 * 12 11 10 14 14 C 1.38157 * 120.08808 * 179.97438 * 13 12 11 15 15 C 1.38199 * 120.16714 * 359.97438 * 14 13 12 16 16 N 1.48029 * 119.95785 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99705 * 359.97438 * 16 15 14 18 18 O 1.21799 * 120.00092 * 179.72323 * 16 15 14 19 19 C 1.38908 * 120.08565 * 0.24570 * 15 14 13 20 20 N 1.39855 * 120.04139 * 179.72393 * 19 15 14 21 21 C 1.47003 * 111.00193 * 243.63788 * 20 19 15 22 22 C 1.53097 * 109.26260 * 177.61086 * 21 20 19 23 23 O 1.43017 * 109.25634 * 56.84638 * 22 21 20 24 24 C 1.43021 * 113.73792 * 301.32989 * 23 22 21 25 25 C 1.47020 * 110.99697 * 120.00036 * 20 19 15 26 26 C 1.38871 * 120.04337 * 179.97438 * 12 11 10 27 27 F 1.35100 * 120.08384 * 0.04873 * 26 12 11 28 28 H 0.96994 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47252 * 60.00022 * 9 7 2 30 30 H 1.09001 * 109.47279 * 300.00566 * 9 7 2 31 31 H 1.09000 * 109.46717 * 60.00373 * 10 9 7 32 32 H 1.08995 * 109.47435 * 300.00100 * 10 9 7 33 33 H 0.96998 * 120.00003 * 0.02562 * 11 10 9 34 34 H 1.08008 * 119.95450 * 359.97438 * 13 12 11 35 35 H 1.07995 * 119.91370 * 179.97438 * 14 13 12 36 36 H 1.09010 * 109.50925 * 297.54497 * 21 20 19 37 37 H 1.09004 * 109.50905 * 57.67360 * 21 20 19 38 38 H 1.09007 * 109.50206 * 296.91415 * 22 21 20 39 39 H 1.08990 * 109.54867 * 176.80541 * 22 21 20 40 40 H 1.08991 * 109.51129 * 298.73777 * 24 23 22 41 41 H 1.08998 * 109.54059 * 178.62413 * 24 23 22 42 42 H 1.08999 * 109.50589 * 302.33135 * 25 20 19 43 43 H 1.09001 * 109.50192 * 62.41136 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.2122 -6.1419 -0.0027 13 6 3.6016 -6.1430 -0.0043 14 6 4.2933 -7.3389 -0.0052 15 6 3.6068 -8.5383 -0.0041 16 7 4.3526 -9.8170 -0.0057 17 8 5.5706 -9.8115 -0.0085 18 8 3.7483 -10.8745 0.0004 19 6 2.2177 -8.5455 -0.0072 20 7 1.5239 -9.7598 -0.0119 21 6 0.7361 -9.9117 -1.2437 22 6 0.0420 -11.2763 -1.2343 23 8 -0.7646 -11.3871 -0.0586 24 6 -0.0292 -11.2448 1.1598 25 6 0.6640 -9.8798 1.1746 26 6 1.5188 -7.3451 -0.0016 27 9 0.1678 -7.3482 0.0000 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8727 -3.6047 0.8878 32 1 2.8714 -3.6040 -0.8922 33 1 0.5429 -4.9308 -0.0005 34 1 4.1416 -5.2076 -0.0047 35 1 5.3733 -7.3364 -0.0068 36 1 -0.0139 -9.1223 -1.2958 37 1 1.3962 -9.8450 -2.1085 38 1 0.7929 -12.0665 -1.2364 39 1 -0.5883 -11.3709 -2.1184 40 1 0.7195 -12.0339 1.2273 41 1 -0.7107 -11.3160 2.0075 42 1 1.2717 -9.7899 2.0750 43 1 -0.0865 -9.0894 1.1616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570985881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = -66.596951 kcal Electronic energy + Delta-G solvation = -29940.552885 eV Core-core repulsion = 25517.294934 eV Total energy + Delta-G solvation = -4423.257951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.34197 -43.01900 -41.21935 -40.16444 -37.98798 -37.35503 -36.35410 -35.10736 -32.70405 -32.28981 -31.54374 -30.48823 -28.16471 -26.89528 -26.01241 -25.15282 -24.26069 -23.29282 -22.42360 -21.62633 -20.28586 -19.65623 -19.09417 -18.37801 -18.36528 -18.30224 -17.71988 -17.46381 -16.89313 -16.79175 -16.52607 -16.29602 -16.08734 -15.87340 -15.80480 -15.46938 -14.93630 -14.82788 -14.42197 -14.03604 -13.98920 -13.50712 -13.49869 -13.07300 -12.99596 -12.74381 -12.50512 -12.50477 -12.39503 -12.35021 -12.08081 -11.98807 -11.67442 -11.64386 -11.47435 -11.40670 -10.82883 -10.63257 -10.23456 -9.77814 -8.95448 -8.28066 -6.39095 -1.05788 -0.36161 0.42847 0.57540 1.40083 1.42196 1.53585 1.94751 2.06383 2.23837 2.40121 2.73134 2.87662 3.08559 3.34289 3.52208 3.73745 3.78505 3.83135 4.01025 4.05598 4.16357 4.18309 4.27174 4.36780 4.42937 4.44743 4.58395 4.66412 4.69011 4.74998 4.78775 4.84110 4.93269 5.03037 5.32162 5.45413 5.49212 5.49564 5.63081 5.75025 5.85787 6.06172 6.10921 6.28269 6.77550 6.83049 7.31844 8.84224 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002665 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.889113 B =10503.543601 C =11859.027473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.016 3.984 10 C 0.133 3.867 11 N -0.711 5.711 12 C 0.251 3.749 13 C -0.174 4.174 14 C 0.008 3.992 15 C -0.091 4.091 16 N 0.047 4.953 17 O -0.220 6.220 18 O -0.136 6.136 19 C 0.170 3.830 20 N -0.489 5.489 21 C 0.018 3.982 22 C 0.070 3.930 23 O -0.399 6.399 24 C 0.071 3.929 25 C 0.014 3.986 26 C -0.031 4.031 27 F -0.132 7.132 28 H 0.264 0.736 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -19.757 -0.068 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.091 0.909 9 C -0.021 4.021 10 C 0.011 3.989 11 N -0.332 5.332 12 C 0.137 3.863 13 C -0.198 4.198 14 C -0.012 4.012 15 C -0.179 4.179 16 N 0.561 4.439 17 O -0.420 6.420 18 O -0.360 6.360 19 C 0.072 3.928 20 N -0.211 5.211 21 C -0.108 4.108 22 C -0.006 4.006 23 O -0.318 6.318 24 C -0.006 4.006 25 C -0.112 4.112 26 C -0.058 4.058 27 F -0.111 7.111 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.193 0.807 35 H 0.198 0.802 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.858 -19.210 -0.065 19.594 hybrid contribution -0.848 1.580 -0.008 1.793 sum 3.010 -17.631 -0.073 17.886 Atomic orbital electron populations 1.70083 1.07874 1.27913 1.51266 1.25928 0.95667 1.03420 0.94577 0.85395 0.79413 0.78754 0.77487 1.17956 1.20835 1.20824 1.21509 0.94020 0.91243 1.50996 0.90864 1.19146 0.94594 0.92523 0.95854 1.21673 0.95230 0.80165 1.01837 1.45473 1.09612 1.03113 1.75008 1.18424 0.93028 0.85065 0.89795 1.20823 0.90122 0.99806 1.09033 1.20990 1.02792 0.87866 0.89580 1.20497 0.89606 0.84233 1.23561 1.43315 1.00596 1.02886 0.97116 1.94498 0.96140 1.94365 1.56985 1.94547 1.70247 1.19391 1.51781 1.18195 0.91028 0.88607 0.94952 1.60128 1.29415 1.27183 1.04409 1.22966 0.96398 1.00114 0.91317 1.22738 0.94904 0.94259 0.88724 1.87973 1.35960 1.93041 1.14779 1.22731 0.96116 0.94200 0.87555 1.23021 0.95582 1.00284 0.92323 1.17537 0.77528 0.92664 1.18071 1.91437 1.27785 1.96864 1.94964 0.92725 0.98184 0.98169 0.90701 0.90695 0.75797 0.80722 0.80198 0.93474 0.89237 0.91069 0.86193 0.91106 0.86223 0.89238 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.74 13.29 21.45 0.28 -52.46 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 40.68 29.54 68.60 2.03 42.71 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -26.89 9.11 25.60 0.23 -26.66 16 8 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 0.73 5.09 29.85 0.15 0.88 16 10 C 0.13 4.27 4.85 86.38 0.42 4.69 16 11 N -0.71 -20.10 5.74 -339.27 -1.95 -22.04 16 12 C 0.25 6.20 6.66 38.18 0.25 6.46 16 13 C -0.17 -3.55 9.31 22.42 0.21 -3.34 16 14 C 0.01 0.17 9.54 22.24 0.21 0.38 16 15 C -0.09 -2.20 6.87 36.52 0.25 -1.95 16 16 N 0.05 1.29 4.45 -46.09 -0.21 1.09 16 17 O -0.22 -6.29 18.44 18.88 0.35 -5.94 16 18 O -0.14 -3.92 17.09 18.89 0.32 -3.60 16 19 C 0.17 4.16 4.73 38.18 0.18 4.34 16 20 N -0.49 -11.25 2.56 -694.13 -1.77 -13.02 16 21 C 0.02 0.38 5.34 86.32 0.46 0.84 16 22 C 0.07 1.24 7.01 72.01 0.50 1.75 16 23 O -0.40 -8.32 10.83 -148.98 -1.61 -9.93 16 24 C 0.07 1.25 7.01 72.01 0.50 1.76 16 25 C 0.01 0.29 5.30 86.31 0.46 0.75 16 26 C -0.03 -0.77 6.71 22.58 0.15 -0.62 16 27 F -0.13 -3.53 12.79 44.97 0.57 -2.95 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.07 2.23 7.95 -2.39 -0.02 2.22 16 32 H 0.07 2.24 7.95 -2.39 -0.02 2.22 16 33 H 0.41 11.98 7.96 -92.71 -0.74 11.24 16 34 H 0.18 2.98 6.73 -2.91 -0.02 2.96 16 35 H 0.18 2.77 7.60 -2.91 -0.02 2.75 16 36 H 0.05 1.08 6.42 -2.38 -0.02 1.07 16 37 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.16 6.11 -2.39 -0.01 1.14 16 Total: -1.00 -61.31 360.92 2.79 -58.51 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.33 Total: 17.77 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.45 Total: -10.13 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -3.64 Total: -86.44 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.94 Total: -19.47 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.57 Total: -2.95 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -61.31 2.79 -58.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570985881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.083 kcal (2) G-P(sol) polarization free energy of solvation -61.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds