Wall clock time and date at job start Tue Mar 31 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47204 * 264.37038 * 3 2 1 5 5 H 1.48502 * 109.47223 * 144.36571 * 3 2 1 6 6 H 1.48502 * 109.46993 * 24.36955 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 11.04885 * 7 2 1 9 9 C 1.50705 * 119.99725 * 191.04568 * 7 2 1 10 10 C 1.52995 * 115.55073 * 276.15753 * 9 7 2 11 11 S 1.81397 * 109.47517 * 306.17844 * 10 9 7 12 12 O 1.42103 * 110.54124 * 297.99139 * 11 10 9 13 13 O 1.42095 * 110.54435 * 74.73934 * 11 10 9 14 14 N 1.65599 * 104.45445 * 186.36568 * 11 10 9 15 15 C 1.46927 * 120.63226 * 268.98602 * 14 11 10 16 16 C 1.53192 * 108.77600 * 126.36224 * 15 14 11 17 17 C 1.53036 * 109.31122 * 54.63734 * 16 15 14 18 18 C 1.53034 * 109.53693 * 298.63189 * 17 16 15 19 19 C 1.46924 * 120.63093 * 88.69573 * 14 11 10 20 20 H 1.09001 * 109.58087 * 113.84831 * 19 14 11 21 21 C 1.50697 * 109.58721 * 353.42856 * 19 14 11 22 22 C 1.39868 * 125.90090 * 141.38192 * 21 19 14 23 23 C 1.35315 * 107.92096 * 179.86093 * 22 21 19 24 24 N 1.34943 * 107.74592 * 0.39599 * 23 22 21 25 25 H 0.97002 * 126.03993 * 179.75186 * 24 23 22 26 26 N 1.30840 * 125.89637 * 321.68427 * 21 19 14 27 27 C 1.52999 * 117.49416 * 130.49231 * 9 7 2 28 28 C 1.52991 * 117.49856 * 61.83436 * 9 7 2 29 29 H 0.96998 * 120.00545 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47278 * 66.17845 * 10 9 7 31 31 H 1.08999 * 109.47263 * 186.17384 * 10 9 7 32 32 H 1.09002 * 109.58704 * 246.15281 * 15 14 11 33 33 H 1.09004 * 109.58740 * 6.43307 * 15 14 11 34 34 H 1.09003 * 109.49502 * 174.58641 * 16 15 14 35 35 H 1.08996 * 109.50158 * 294.67897 * 16 15 14 36 36 H 1.08997 * 109.46183 * 58.65382 * 17 16 15 37 37 H 1.09002 * 109.45982 * 178.62234 * 17 16 15 38 38 H 1.09005 * 109.49779 * 181.32152 * 18 17 16 39 39 H 1.09002 * 109.50085 * 301.41205 * 18 17 16 40 40 H 1.08004 * 126.04271 * 359.97438 * 22 21 19 41 41 H 1.08003 * 126.12681 * 180.14332 * 23 22 21 42 42 H 1.08999 * 117.50423 * 0.02562 * 27 9 7 43 43 H 1.09010 * 117.49785 * 145.02157 * 27 9 7 44 44 H 1.09001 * 117.50016 * 214.97625 * 28 9 7 45 45 H 1.08999 * 117.50005 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6156 1.9777 -1.3933 5 1 3.4821 1.4774 0.8157 6 1 1.3922 2.6840 0.5777 7 6 2.0045 -1.1941 -0.0005 8 1 1.4795 -2.1207 -0.1802 9 6 3.4906 -1.2062 0.2495 10 6 4.3678 -0.9321 -0.9736 11 16 3.9235 -2.0800 -2.3060 12 8 4.1621 -3.4230 -1.9073 13 8 2.6900 -1.7005 -2.9006 14 7 5.0498 -1.7984 -3.4869 15 6 4.7972 -0.8067 -4.5411 16 6 5.9675 0.1812 -4.5794 17 6 7.2775 -0.5924 -4.7451 18 6 7.4740 -1.5279 -3.5501 19 6 6.3233 -2.5311 -3.4968 20 1 6.3656 -3.1783 -4.3728 21 6 6.4376 -3.3623 -2.2450 22 6 6.9767 -4.6503 -2.1622 23 6 6.9014 -5.0509 -0.8719 24 7 6.3268 -4.0555 -0.1650 25 1 6.1417 -4.0648 0.7872 26 7 6.0447 -3.0060 -1.0490 27 6 4.0230 -2.1884 1.2949 28 6 3.9835 -0.6894 1.6025 29 1 -0.4851 0.8400 -0.0004 30 1 4.2120 0.0929 -1.3102 31 1 5.4157 -1.0718 -0.7079 32 1 4.7125 -1.3104 -5.5040 33 1 3.8719 -0.2721 -4.3258 34 1 5.8396 0.8643 -5.4191 35 1 5.9951 0.7487 -3.6492 36 1 7.2393 -1.1789 -5.6630 37 1 8.1097 0.1097 -4.7972 38 1 8.4186 -2.0613 -3.6571 39 1 7.4876 -0.9444 -2.6295 40 1 7.3832 -5.2231 -2.9827 41 1 7.2371 -5.9994 -0.4791 42 1 3.2985 -2.8260 1.8014 43 1 4.9985 -2.6389 1.1114 44 1 4.9330 -0.1544 1.6214 45 1 3.2330 -0.3403 2.3117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573893175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:12 Heat of formation + Delta-G solvation = 71.870470 kcal Electronic energy + Delta-G solvation = -30452.536338 eV Core-core repulsion = 26601.495960 eV Total energy + Delta-G solvation = -3851.040377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06834 -38.37300 -36.94695 -36.16370 -34.84285 -32.81102 -32.13257 -32.03058 -29.78867 -29.67831 -28.23900 -25.44840 -24.67097 -23.55200 -21.73791 -21.29705 -20.41295 -20.01779 -19.16955 -17.94518 -17.87338 -16.84587 -16.36829 -15.65750 -15.17762 -14.82820 -14.65389 -14.51321 -14.21629 -14.08463 -13.85896 -13.64433 -13.31978 -13.22566 -13.08525 -12.86112 -12.50313 -12.25026 -12.16888 -11.45211 -11.28434 -11.22546 -11.03085 -10.97728 -10.93294 -10.82155 -10.68158 -10.57058 -10.54556 -10.40094 -10.08435 -9.94052 -9.54513 -8.97408 -8.86425 -8.64444 -8.52969 -8.35439 -8.25000 -6.11599 -4.17420 1.24406 2.20963 2.97094 3.11615 3.28242 3.36368 3.40993 3.50023 4.42565 4.49163 4.74314 4.77693 4.86182 4.96719 4.98364 5.02414 5.12368 5.17733 5.26939 5.32797 5.39021 5.60336 5.66213 5.75854 5.81355 5.82422 5.87587 5.94237 6.00142 6.02200 6.06051 6.15829 6.18953 6.22991 6.33702 6.37639 6.46181 6.50441 6.70061 6.91550 6.95214 7.01626 7.15838 7.57524 7.72977 7.86615 8.44284 8.93673 9.52354 11.00443 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.006599 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.210429 B = 4241.782706 C = 5346.345545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.098 3.902 3 Si 0.854 3.146 4 H -0.274 1.274 5 H -0.244 1.244 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.014 3.986 10 C -0.566 4.566 11 S 2.630 3.370 12 O -0.955 6.955 13 O -0.952 6.952 14 N -1.010 6.010 15 C 0.119 3.881 16 C -0.140 4.140 17 C -0.114 4.114 18 C -0.126 4.126 19 C 0.244 3.756 20 H 0.091 0.909 21 C 0.063 3.937 22 C -0.251 4.251 23 C 0.056 3.944 24 N -0.450 5.450 25 H 0.437 0.563 26 N -0.271 5.271 27 C -0.175 4.175 28 C -0.173 4.173 29 H 0.267 0.733 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.141 0.859 41 H 0.171 0.829 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.361 -4.260 -6.464 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.108 4.108 3 Si 0.680 3.320 4 H -0.200 1.200 5 H -0.167 1.167 6 H -0.215 1.215 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.012 3.988 10 C -0.698 4.698 11 S 2.727 3.273 12 O -0.944 6.944 13 O -0.942 6.942 14 N -0.845 5.845 15 C -0.006 4.006 16 C -0.179 4.179 17 C -0.152 4.152 18 C -0.166 4.166 19 C 0.136 3.864 20 H 0.108 0.892 21 C -0.104 4.104 22 C -0.281 4.281 23 C -0.092 4.092 24 N -0.159 5.159 25 H 0.282 0.718 26 N -0.097 5.097 27 C -0.212 4.212 28 C -0.212 4.212 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.159 0.841 41 H 0.188 0.812 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.908 -3.902 -5.895 19.253 hybrid contribution 0.915 0.752 0.270 1.215 sum 18.824 -3.151 -5.625 19.897 Atomic orbital electron populations 1.69907 1.06518 1.27325 1.47836 1.24865 0.94367 0.98873 0.92677 0.87244 0.81744 0.83658 0.79319 1.19999 1.16709 1.21454 1.20365 0.87847 0.95613 1.51754 0.90068 1.18675 0.93900 1.01269 0.84989 1.30266 1.09206 1.14142 1.16178 1.04513 0.72226 0.76299 0.74233 1.93597 1.84693 1.33690 1.82417 1.93534 1.40735 1.84802 1.75151 1.58370 1.31372 1.51955 1.42842 1.21372 0.98559 0.89489 0.91185 1.21977 0.95150 0.98073 1.02664 1.21456 0.97408 0.98233 0.98061 1.21884 0.97519 0.97531 0.99643 1.18963 0.84014 0.90764 0.92676 0.89155 1.21867 0.99251 0.95855 0.93399 1.20975 1.13612 0.96593 0.96877 1.22355 0.99270 0.94670 0.92874 1.46004 1.47655 1.11974 1.10283 0.71796 1.76856 1.20644 1.12140 1.00103 1.22935 1.00555 0.92260 1.05445 1.22928 1.00890 0.95894 1.01521 0.92357 0.88255 0.85470 0.91296 0.88881 0.90799 0.91391 0.91641 0.91719 0.90639 0.91091 0.84094 0.81179 0.89551 0.90651 0.91119 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.10 2.90 5.46 -17.82 -0.10 2.80 16 3 Si 0.85 21.52 25.42 -169.99 -4.32 17.20 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.24 -5.63 5.43 56.52 0.31 -5.32 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 7 C -0.52 -15.14 8.06 -34.44 -0.28 -15.42 16 8 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16 9 C 0.01 0.34 0.94 -155.67 -0.15 0.20 16 10 C -0.57 -12.18 5.15 37.15 0.19 -11.99 16 11 S 2.63 57.96 4.25 -107.50 -0.46 57.50 16 12 O -0.96 -21.80 13.09 -57.54 -0.75 -22.56 16 13 O -0.95 -25.15 16.02 -57.54 -0.92 -26.07 16 14 N -1.01 -16.77 3.23 -107.94 -0.35 -17.12 16 15 C 0.12 1.70 6.32 -3.71 -0.02 1.68 16 16 C -0.14 -1.55 6.08 -26.61 -0.16 -1.72 16 17 C -0.11 -1.06 5.88 -26.70 -0.16 -1.22 16 18 C -0.13 -1.36 5.33 -26.84 -0.14 -1.50 16 19 C 0.24 3.33 3.33 -68.98 -0.23 3.10 16 20 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 21 C 0.06 0.96 3.99 -82.41 -0.33 0.63 16 22 C -0.25 -3.24 10.74 -40.01 -0.43 -3.67 16 23 C 0.06 0.65 11.99 -17.23 -0.21 0.45 16 24 N -0.45 -6.23 6.71 30.44 0.20 -6.03 16 25 H 0.44 5.10 7.45 -182.61 -1.36 3.74 16 26 N -0.27 -4.51 5.19 33.67 0.17 -4.34 16 27 C -0.17 -3.62 9.90 -26.70 -0.26 -3.89 16 28 C -0.17 -3.73 7.27 -26.70 -0.19 -3.92 16 29 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.10 2.13 6.20 -51.92 -0.32 1.81 16 31 H 0.13 2.41 5.99 -51.92 -0.31 2.09 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.50 7.06 -51.93 -0.37 1.13 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.08 1.33 4.74 -51.92 -0.25 1.08 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 1.95 8.02 -51.93 -0.42 1.53 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -37.56 351.31 -10.57 -48.13 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.75 Total: 9.34 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: -2.47 Total: -34.47 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.80 Total: -54.35 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -1.67 Total: -48.63 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.32 Total: 17.20 kcal Atomic # 16 Polarization: 57.96 SS G_CDS: -0.46 Total: 57.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.56 -10.57 -48.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573893175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.997 kcal (2) G-P(sol) polarization free energy of solvation -37.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds