Wall clock time and date at job start Tue Mar 31 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47204 * 264.37038 * 3 2 1 5 5 H 1.48502 * 109.47223 * 144.36571 * 3 2 1 6 6 H 1.48502 * 109.46993 * 24.36955 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 11.04885 * 7 2 1 9 9 C 1.50705 * 119.99725 * 191.04568 * 7 2 1 10 10 C 1.52995 * 115.55073 * 276.15753 * 9 7 2 11 11 S 1.81397 * 109.47517 * 306.17844 * 10 9 7 12 12 O 1.42103 * 110.54124 * 297.99139 * 11 10 9 13 13 O 1.42095 * 110.54435 * 74.73934 * 11 10 9 14 14 N 1.65599 * 104.45445 * 186.36568 * 11 10 9 15 15 C 1.46927 * 120.63226 * 268.98602 * 14 11 10 16 16 C 1.53192 * 108.77600 * 126.36224 * 15 14 11 17 17 C 1.53036 * 109.31122 * 54.63734 * 16 15 14 18 18 C 1.53034 * 109.53693 * 298.63189 * 17 16 15 19 19 C 1.46924 * 120.63093 * 88.69573 * 14 11 10 20 20 H 1.09001 * 109.58087 * 113.84831 * 19 14 11 21 21 C 1.50697 * 109.58721 * 353.42856 * 19 14 11 22 22 C 1.39868 * 125.90090 * 141.38192 * 21 19 14 23 23 C 1.35315 * 107.92096 * 179.86093 * 22 21 19 24 24 N 1.34943 * 107.74592 * 0.39599 * 23 22 21 25 25 H 0.97002 * 126.03993 * 179.75186 * 24 23 22 26 26 N 1.30840 * 125.89637 * 321.68427 * 21 19 14 27 27 C 1.52999 * 117.49416 * 130.49231 * 9 7 2 28 28 C 1.52991 * 117.49856 * 61.83436 * 9 7 2 29 29 H 0.96998 * 120.00545 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47278 * 66.17845 * 10 9 7 31 31 H 1.08999 * 109.47263 * 186.17384 * 10 9 7 32 32 H 1.09002 * 109.58704 * 246.15281 * 15 14 11 33 33 H 1.09004 * 109.58740 * 6.43307 * 15 14 11 34 34 H 1.09003 * 109.49502 * 174.58641 * 16 15 14 35 35 H 1.08996 * 109.50158 * 294.67897 * 16 15 14 36 36 H 1.08997 * 109.46183 * 58.65382 * 17 16 15 37 37 H 1.09002 * 109.45982 * 178.62234 * 17 16 15 38 38 H 1.09005 * 109.49779 * 181.32152 * 18 17 16 39 39 H 1.09002 * 109.50085 * 301.41205 * 18 17 16 40 40 H 1.08004 * 126.04271 * 359.97438 * 22 21 19 41 41 H 1.08003 * 126.12681 * 180.14332 * 23 22 21 42 42 H 1.08999 * 117.50423 * 0.02562 * 27 9 7 43 43 H 1.09010 * 117.49785 * 145.02157 * 27 9 7 44 44 H 1.09001 * 117.50016 * 214.97625 * 28 9 7 45 45 H 1.08999 * 117.50005 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6156 1.9777 -1.3933 5 1 3.4821 1.4774 0.8157 6 1 1.3922 2.6840 0.5777 7 6 2.0045 -1.1941 -0.0005 8 1 1.4795 -2.1207 -0.1802 9 6 3.4906 -1.2062 0.2495 10 6 4.3678 -0.9321 -0.9736 11 16 3.9235 -2.0800 -2.3060 12 8 4.1621 -3.4230 -1.9073 13 8 2.6900 -1.7005 -2.9006 14 7 5.0498 -1.7984 -3.4869 15 6 4.7972 -0.8067 -4.5411 16 6 5.9675 0.1812 -4.5794 17 6 7.2775 -0.5924 -4.7451 18 6 7.4740 -1.5279 -3.5501 19 6 6.3233 -2.5311 -3.4968 20 1 6.3656 -3.1783 -4.3728 21 6 6.4376 -3.3623 -2.2450 22 6 6.9767 -4.6503 -2.1622 23 6 6.9014 -5.0509 -0.8719 24 7 6.3268 -4.0555 -0.1650 25 1 6.1417 -4.0648 0.7872 26 7 6.0447 -3.0060 -1.0490 27 6 4.0230 -2.1884 1.2949 28 6 3.9835 -0.6894 1.6025 29 1 -0.4851 0.8400 -0.0004 30 1 4.2120 0.0929 -1.3102 31 1 5.4157 -1.0718 -0.7079 32 1 4.7125 -1.3104 -5.5040 33 1 3.8719 -0.2721 -4.3258 34 1 5.8396 0.8643 -5.4191 35 1 5.9951 0.7487 -3.6492 36 1 7.2393 -1.1789 -5.6630 37 1 8.1097 0.1097 -4.7972 38 1 8.4186 -2.0613 -3.6571 39 1 7.4876 -0.9444 -2.6295 40 1 7.3832 -5.2231 -2.9827 41 1 7.2371 -5.9994 -0.4791 42 1 3.2985 -2.8260 1.8014 43 1 4.9985 -2.6389 1.1114 44 1 4.9330 -0.1544 1.6214 45 1 3.2330 -0.3403 2.3117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573893175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:11 Heat of formation + Delta-G solvation = 43.686977 kcal Electronic energy + Delta-G solvation = -30453.758466 eV Core-core repulsion = 26601.495960 eV Total energy + Delta-G solvation = -3852.262505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06963 -39.38593 -38.76701 -37.90271 -36.62235 -34.34424 -33.79938 -33.11791 -30.84017 -30.65132 -29.92212 -27.60954 -25.73046 -24.51404 -23.39308 -22.29978 -21.72110 -21.04850 -20.82831 -19.40600 -18.99342 -18.63386 -17.97258 -17.10692 -16.97571 -16.59474 -15.76290 -15.60983 -15.53112 -15.41064 -15.16679 -14.90873 -14.64717 -14.55134 -14.30718 -14.19510 -14.04498 -13.91484 -13.20559 -13.18721 -12.80173 -12.75856 -12.72294 -12.61861 -12.33629 -12.23018 -12.16624 -11.98318 -11.73277 -11.67382 -11.55782 -11.36602 -11.24203 -10.79333 -10.75913 -10.29123 -9.96866 -9.66409 -9.33109 -8.38750 -6.49437 -0.39320 1.22797 1.28002 1.29444 1.42871 1.90758 2.15485 2.19504 2.30650 2.94870 3.07678 3.25028 3.49478 3.54511 3.74346 3.96944 4.04980 4.10439 4.15724 4.29692 4.32572 4.39242 4.42698 4.45911 4.53279 4.68812 4.75833 4.81995 4.85037 4.89425 4.97923 5.02069 5.05972 5.08695 5.18574 5.19341 5.26170 5.30196 5.36643 5.45700 5.55103 5.62850 5.80473 5.93842 6.15001 6.60649 6.68108 6.85834 7.23633 8.78166 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.006599 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.210429 B = 4241.782706 C = 5346.345545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.035 3.965 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.204 1.204 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.021 0.979 9 C -0.020 4.020 10 C -0.554 4.554 11 S 2.630 3.370 12 O -0.972 6.972 13 O -1.015 7.015 14 N -1.004 6.004 15 C 0.108 3.892 16 C -0.137 4.137 17 C -0.109 4.109 18 C -0.120 4.120 19 C 0.234 3.766 20 H 0.110 0.890 21 C 0.047 3.953 22 C -0.269 4.269 23 C 0.066 3.934 24 N -0.458 5.458 25 H 0.443 0.557 26 N -0.317 5.317 27 C -0.160 4.160 28 C -0.160 4.160 29 H 0.269 0.731 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.166 0.834 41 H 0.214 0.786 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.240 -3.784 -6.897 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.165 4.165 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.125 1.125 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.039 0.961 9 C -0.022 4.022 10 C -0.687 4.687 11 S 2.729 3.271 12 O -0.961 6.961 13 O -1.005 7.005 14 N -0.843 5.843 15 C -0.017 4.017 16 C -0.175 4.175 17 C -0.146 4.146 18 C -0.159 4.159 19 C 0.127 3.873 20 H 0.127 0.873 21 C -0.119 4.119 22 C -0.298 4.298 23 C -0.081 4.081 24 N -0.168 5.168 25 H 0.288 0.712 26 N -0.144 5.144 27 C -0.197 4.197 28 C -0.199 4.199 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.176 0.824 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.184 0.816 41 H 0.230 0.770 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.804 -3.449 -6.320 23.914 hybrid contribution -0.607 0.390 0.372 0.812 sum 22.197 -3.058 -5.948 23.183 Atomic orbital electron populations 1.70064 1.08695 1.28465 1.50273 1.25853 0.95173 1.03204 0.92273 0.86344 0.81853 0.78276 0.80315 1.19354 1.12511 1.21020 1.20463 0.90933 0.93343 1.51073 0.96069 1.18556 0.91276 1.05218 0.87157 1.30116 1.10206 1.13671 1.14677 1.04066 0.71986 0.76182 0.74852 1.93564 1.84878 1.34639 1.83010 1.93458 1.44868 1.85590 1.76547 1.57941 1.31737 1.52861 1.41747 1.21638 0.99013 0.89925 0.91113 1.21996 0.94739 0.97623 1.03189 1.21475 0.96761 0.98341 0.98048 1.21884 0.97185 0.97075 0.99797 1.19437 0.83228 0.91590 0.93000 0.87260 1.22277 0.99128 0.97026 0.93432 1.21410 1.13978 0.96092 0.98308 1.23095 0.97227 0.95325 0.92471 1.46085 1.47958 1.12163 1.10606 0.71154 1.76635 1.22630 1.14009 1.01157 1.23002 1.01614 0.92179 1.02916 1.23003 1.01803 0.96503 0.98591 0.92240 0.88443 0.82424 0.89280 0.91855 0.88481 0.92421 0.89980 0.89461 0.88017 0.92314 0.81648 0.76957 0.90833 0.87175 0.87625 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.19 13.96 21.45 0.30 -61.89 16 2 C 0.03 2.15 5.46 84.66 0.46 2.61 16 3 Si 0.91 44.58 25.42 68.60 1.74 46.32 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.20 -8.56 5.43 99.48 0.54 -8.02 16 6 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.52 -31.96 8.06 25.60 0.21 -31.75 16 8 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 9 C -0.02 -0.94 0.94 -52.93 -0.05 -0.99 16 10 C -0.55 -23.48 5.15 71.98 0.37 -23.11 16 11 S 2.63 118.59 4.25 -56.49 -0.24 118.35 16 12 O -0.97 -45.15 13.09 -127.65 -1.67 -46.82 16 13 O -1.01 -56.96 16.02 -127.65 -2.04 -59.01 16 14 N -1.00 -32.59 3.23 -495.41 -1.60 -34.19 16 15 C 0.11 2.99 6.32 86.36 0.55 3.54 16 16 C -0.14 -2.67 6.08 30.67 0.19 -2.49 16 17 C -0.11 -1.57 5.88 30.62 0.18 -1.39 16 18 C -0.12 -2.13 5.33 30.52 0.16 -1.97 16 19 C 0.23 5.83 3.33 44.08 0.15 5.98 16 20 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 21 C 0.05 1.34 3.99 43.10 0.17 1.51 16 22 C -0.27 -6.13 10.74 21.99 0.24 -5.89 16 23 C 0.07 1.34 11.99 83.54 1.00 2.34 16 24 N -0.46 -11.61 6.71 -57.59 -0.39 -12.00 16 25 H 0.44 9.32 7.45 -213.33 -1.59 7.73 16 26 N -0.32 -9.97 5.19 -47.39 -0.25 -10.21 16 27 C -0.16 -6.49 9.90 30.62 0.30 -6.19 16 28 C -0.16 -6.53 7.27 30.61 0.22 -6.31 16 29 H 0.27 16.54 8.31 -92.71 -0.77 15.77 16 30 H 0.10 4.10 6.20 -2.39 -0.01 4.09 16 31 H 0.16 5.64 5.99 -2.39 -0.01 5.62 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.12 7.06 -2.38 -0.02 2.10 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.11 3.66 4.74 -2.38 -0.01 3.65 16 44 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 45 H 0.08 3.33 8.02 -2.39 -0.02 3.31 16 Total: -1.00 -89.22 351.31 -0.74 -89.96 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.75 Total: 33.61 kcal Atomic # 6 Polarization: -68.27 SS G_CDS: 4.15 Total: -64.12 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -1.93 Total: -118.29 kcal Atomic # 8 Polarization: -102.12 SS G_CDS: -3.72 Total: -105.83 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.74 Total: 46.32 kcal Atomic # 16 Polarization: 118.59 SS G_CDS: -0.24 Total: 118.35 kcal Total: -89.22 -0.74 -89.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573893175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.651 kcal (2) G-P(sol) polarization free energy of solvation -89.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds