Wall clock time and date at job start Tue Mar 31 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48501 * 109.46988 * 270.00098 * 3 2 1 5 5 H 1.48507 * 109.47031 * 29.99884 * 3 2 1 6 6 H 1.48499 * 109.47207 * 149.99931 * 3 2 1 7 7 C 1.37874 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99957 * 173.00580 * 7 2 1 9 9 C 1.50701 * 120.00073 * 352.99937 * 7 2 1 10 10 C 1.52992 * 115.55015 * 84.79053 * 9 7 2 11 11 S 1.81398 * 109.47204 * 39.91521 * 10 9 7 12 12 O 1.42097 * 110.54580 * 62.31323 * 11 10 9 13 13 O 1.42102 * 110.54538 * 285.55748 * 11 10 9 14 14 N 1.65604 * 104.44898 * 173.93748 * 11 10 9 15 15 C 1.46928 * 120.62769 * 269.71883 * 14 11 10 16 16 C 1.52760 * 109.00635 * 233.58363 * 15 14 11 17 17 C 1.53038 * 109.38794 * 305.58888 * 16 15 14 18 18 N 1.46495 * 109.46240 * 181.26224 * 17 16 15 19 19 C 1.36880 * 126.39498 * 119.93604 * 18 17 16 20 20 C 1.34671 * 106.81640 * 179.97438 * 19 18 17 21 21 N 1.34129 * 108.02325 * 359.97438 * 20 19 18 22 22 C 1.30510 * 109.25044 * 359.72486 * 21 20 19 23 23 C 1.53043 * 109.53735 * 61.23595 * 17 16 15 24 24 C 1.46925 * 120.63207 * 90.00020 * 14 11 10 25 25 C 1.53004 * 117.51859 * 230.49290 * 9 7 2 26 26 C 1.52997 * 60.00035 * 107.47960 * 25 9 7 27 27 H 0.97008 * 119.99773 * 5.03025 * 1 2 3 28 28 H 1.09003 * 109.46903 * 279.91273 * 10 9 7 29 29 H 1.08997 * 109.47468 * 159.91725 * 10 9 7 30 30 H 1.09000 * 109.59019 * 353.42080 * 15 14 11 31 31 H 1.09000 * 109.58797 * 113.84555 * 15 14 11 32 32 H 1.09004 * 109.56641 * 185.55187 * 16 15 14 33 33 H 1.09001 * 109.38880 * 65.51614 * 16 15 14 34 34 H 1.09006 * 109.45599 * 301.22238 * 17 16 15 35 35 H 1.07996 * 126.59587 * 359.95768 * 19 18 17 36 36 H 1.07999 * 125.99490 * 179.97438 * 20 19 18 37 37 H 1.08001 * 125.64685 * 180.28876 * 22 21 20 38 38 H 1.09001 * 109.49700 * 178.68245 * 23 17 16 39 39 H 1.09004 * 109.51939 * 58.61059 * 23 17 16 40 40 H 1.09004 * 109.58526 * 246.15642 * 24 14 11 41 41 H 1.09000 * 109.58490 * 6.44025 * 24 14 11 42 42 H 1.09003 * 117.49601 * 214.97567 * 25 9 7 43 43 H 1.09007 * 117.49691 * 359.97438 * 25 9 7 44 44 H 1.08996 * 117.49665 * 252.50839 * 26 25 9 45 45 H 1.09000 * 117.49871 * 107.49306 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2593 -2.4944 0.1580 10 6 0.6798 -3.0839 -1.1294 11 16 1.8645 -2.8587 -2.4845 12 8 3.0717 -3.5572 -2.2128 13 8 1.8825 -1.5033 -2.9110 14 7 1.1960 -3.6787 -3.7584 15 6 1.5063 -5.0975 -3.9810 16 6 2.0039 -5.2791 -5.4139 17 6 0.9738 -4.7005 -6.3866 18 7 1.4353 -4.9008 -7.7624 19 6 0.7900 -5.6078 -8.7408 20 6 1.5586 -5.5366 -9.8443 21 7 2.6435 -4.8056 -9.5480 22 6 2.5733 -4.4162 -8.3043 23 6 0.8017 -3.2035 -6.1192 24 6 0.2861 -2.9998 -4.6911 25 6 1.7651 -3.4742 1.2187 26 6 0.4654 -2.7007 1.4495 27 1 -0.4850 0.8369 -0.0737 28 1 -0.2530 -2.5758 -1.3740 29 1 0.4878 -4.1475 -0.9877 30 1 2.2810 -5.4160 -3.2835 31 1 0.6079 -5.6961 -3.8306 32 1 2.1433 -6.3403 -5.6202 33 1 2.9530 -4.7571 -5.5362 34 1 0.0184 -5.2065 -6.2469 35 1 -0.1540 -6.1237 -8.6460 36 1 1.3400 -5.9888 -10.8004 37 1 3.3057 -3.8095 -7.7925 38 1 0.0853 -2.7874 -6.8275 39 1 1.7616 -2.7002 -6.2347 40 1 -0.7140 -3.4239 -4.5997 41 1 0.2540 -1.9350 -4.4603 42 1 1.6850 -4.5389 0.9992 43 1 2.6373 -3.1786 1.8018 44 1 0.4823 -1.8962 2.1846 45 1 -0.4698 -3.2565 1.3820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580257418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:29 Heat of formation + Delta-G solvation = 18.630795 kcal Electronic energy + Delta-G solvation = -28348.134093 eV Core-core repulsion = 24494.785070 eV Total energy + Delta-G solvation = -3853.349023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23782 -38.65258 -36.78768 -36.30424 -35.04135 -34.28986 -32.10865 -31.36277 -30.64419 -29.34227 -28.23823 -25.55583 -24.66627 -23.64494 -21.99281 -21.27708 -21.25645 -20.16644 -19.56349 -18.44529 -17.73609 -16.84334 -16.47721 -15.82153 -15.33566 -15.21873 -14.83614 -14.74211 -14.38771 -14.35053 -14.07517 -13.81058 -13.69233 -13.68640 -13.45959 -13.08185 -12.62692 -12.31168 -12.26746 -11.85535 -11.61592 -11.43316 -11.36783 -11.20603 -11.06618 -10.95201 -10.87384 -10.73315 -10.56435 -10.41929 -10.17918 -10.08481 -9.78328 -9.68528 -9.10591 -8.89779 -8.64208 -8.58994 -8.17008 -6.21724 -4.36662 1.01630 1.93897 2.58365 3.07527 3.27988 3.31926 3.36472 3.39469 4.16242 4.35148 4.39697 4.55542 4.61741 4.63721 4.71182 4.75270 4.92619 4.94501 5.08112 5.08627 5.17649 5.20583 5.32772 5.41207 5.46866 5.53682 5.54828 5.64356 5.71980 5.76604 5.87158 5.89490 6.09586 6.21048 6.24739 6.29785 6.55153 6.61401 6.63390 6.72477 6.90204 7.05477 7.12074 7.33696 7.72963 7.97054 8.12545 8.72247 9.40942 10.85733 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.003237 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.120913 B = 8648.899431 C = 9281.977105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.098 3.902 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.050 3.950 10 C -0.558 4.558 11 S 2.621 3.379 12 O -0.971 6.971 13 O -0.937 6.937 14 N -1.017 6.017 15 C 0.122 3.878 16 C -0.140 4.140 17 C 0.137 3.863 18 N -0.452 5.452 19 C -0.059 4.059 20 C -0.035 4.035 21 N -0.499 5.499 22 C 0.186 3.814 23 C -0.140 4.140 24 C 0.122 3.878 25 C -0.204 4.204 26 C -0.144 4.144 27 H 0.265 0.735 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.201 0.799 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -11.547 -11.350 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.109 4.109 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.048 3.952 10 C -0.690 4.690 11 S 2.719 3.281 12 O -0.961 6.961 13 O -0.927 6.927 14 N -0.853 5.853 15 C -0.005 4.005 16 C -0.179 4.179 17 C 0.034 3.966 18 N -0.133 5.133 19 C -0.192 4.192 20 C -0.183 4.183 21 N -0.217 5.217 22 C -0.097 4.097 23 C -0.179 4.179 24 C -0.004 4.004 25 C -0.242 4.242 26 C -0.183 4.183 27 H 0.075 0.925 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.188 0.812 36 H 0.184 0.816 37 H 0.217 0.783 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.623 -10.767 -11.749 16.151 hybrid contribution -1.099 0.345 0.762 1.381 sum -3.723 -10.422 -10.987 15.595 Atomic orbital electron populations 1.69952 1.06195 1.27513 1.46420 1.24889 0.94720 0.99291 0.92011 0.86606 0.80164 0.82708 0.78962 1.19546 1.20946 1.19397 1.20591 0.93660 0.88788 1.55139 0.91318 1.18178 0.98776 0.94014 0.84251 1.30002 1.16470 1.06247 1.16324 1.04840 0.75630 0.73509 0.74104 1.93466 1.42420 1.75005 1.85233 1.93529 1.86218 1.33254 1.79685 1.58432 1.62884 1.20028 1.43954 1.21224 1.01141 0.81911 0.96205 1.22184 0.99087 1.01932 0.94720 1.21529 0.99056 0.98052 0.77994 1.45804 1.18231 1.38618 1.10692 1.22732 1.01805 1.04949 0.89719 1.22283 0.93034 1.03966 0.98992 1.70321 1.23679 1.14935 1.12806 1.24929 0.90929 1.02901 0.90916 1.22267 1.03757 0.93840 0.98086 1.21328 0.92375 0.99518 0.87163 1.23130 0.98736 0.95540 1.06747 1.22533 0.92399 1.01118 1.02257 0.92520 0.85476 0.88664 0.87958 0.91447 0.90047 0.90227 0.87985 0.81157 0.81636 0.78264 0.90018 0.90197 0.91373 0.87518 0.91275 0.89663 0.89609 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.32 12.96 55.43 0.72 -22.60 16 2 C 0.10 2.64 5.39 -17.82 -0.10 2.54 16 3 Si 0.89 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.56 6.89 -34.44 -0.24 -14.80 16 8 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 9 C 0.05 1.17 1.64 -155.66 -0.26 0.92 16 10 C -0.56 -11.06 6.29 37.15 0.23 -10.82 16 11 S 2.62 51.36 4.63 -107.50 -0.50 50.87 16 12 O -0.97 -20.94 16.58 -57.54 -0.95 -21.89 16 13 O -0.94 -21.75 15.72 -57.54 -0.90 -22.65 16 14 N -1.02 -13.96 3.23 -113.77 -0.37 -14.33 16 15 C 0.12 1.31 6.40 -3.93 -0.03 1.29 16 16 C -0.14 -1.32 5.38 -26.83 -0.14 -1.46 16 17 C 0.14 1.20 2.82 -67.89 -0.19 1.01 16 18 N -0.45 -4.48 2.62 -111.42 -0.29 -4.77 16 19 C -0.06 -0.55 11.54 -16.56 -0.19 -0.74 16 20 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 21 N -0.50 -6.62 11.25 -14.66 -0.16 -6.79 16 22 C 0.19 2.14 11.61 -90.37 -1.05 1.09 16 23 C -0.14 -1.39 5.39 -26.61 -0.14 -1.54 16 24 C 0.12 1.42 6.43 -3.71 -0.02 1.40 16 25 C -0.20 -4.29 9.88 -26.73 -0.26 -4.55 16 26 C -0.14 -3.18 9.50 -26.73 -0.25 -3.44 16 27 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 28 H 0.13 2.55 8.14 -51.92 -0.42 2.12 16 29 H 0.09 1.55 7.95 -51.93 -0.41 1.13 16 30 H 0.10 1.20 6.85 -51.93 -0.36 0.85 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.85 7.99 -51.93 -0.42 0.43 16 34 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.20 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.89 7.98 -51.93 -0.41 0.47 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.44 6.86 -51.93 -0.36 1.08 16 42 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 43 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 44 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -33.53 378.13 -11.63 -45.16 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.99 Total: 4.71 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.85 Total: -29.69 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.11 Total: -48.49 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.86 Total: -44.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.50 Total: 50.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.53 -11.63 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580257418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.786 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds