Wall clock time and date at job start Tue Mar 31 2020 22:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48501 * 109.46988 * 270.00098 * 3 2 1 5 5 H 1.48507 * 109.47031 * 29.99884 * 3 2 1 6 6 H 1.48499 * 109.47207 * 149.99931 * 3 2 1 7 7 C 1.37874 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99957 * 173.00580 * 7 2 1 9 9 C 1.50701 * 120.00073 * 352.99937 * 7 2 1 10 10 C 1.52992 * 115.55015 * 84.79053 * 9 7 2 11 11 S 1.81398 * 109.47204 * 39.91521 * 10 9 7 12 12 O 1.42097 * 110.54580 * 62.31323 * 11 10 9 13 13 O 1.42102 * 110.54538 * 285.55748 * 11 10 9 14 14 N 1.65604 * 104.44898 * 173.93748 * 11 10 9 15 15 C 1.46928 * 120.62769 * 269.71883 * 14 11 10 16 16 C 1.52760 * 109.00635 * 233.58363 * 15 14 11 17 17 C 1.53038 * 109.38794 * 305.58888 * 16 15 14 18 18 N 1.46495 * 109.46240 * 181.26224 * 17 16 15 19 19 C 1.36880 * 126.39498 * 119.93604 * 18 17 16 20 20 C 1.34671 * 106.81640 * 179.97438 * 19 18 17 21 21 N 1.34129 * 108.02325 * 359.97438 * 20 19 18 22 22 C 1.30510 * 109.25044 * 359.72486 * 21 20 19 23 23 C 1.53043 * 109.53735 * 61.23595 * 17 16 15 24 24 C 1.46925 * 120.63207 * 90.00020 * 14 11 10 25 25 C 1.53004 * 117.51859 * 230.49290 * 9 7 2 26 26 C 1.52997 * 60.00035 * 107.47960 * 25 9 7 27 27 H 0.97008 * 119.99773 * 5.03025 * 1 2 3 28 28 H 1.09003 * 109.46903 * 279.91273 * 10 9 7 29 29 H 1.08997 * 109.47468 * 159.91725 * 10 9 7 30 30 H 1.09000 * 109.59019 * 353.42080 * 15 14 11 31 31 H 1.09000 * 109.58797 * 113.84555 * 15 14 11 32 32 H 1.09004 * 109.56641 * 185.55187 * 16 15 14 33 33 H 1.09001 * 109.38880 * 65.51614 * 16 15 14 34 34 H 1.09006 * 109.45599 * 301.22238 * 17 16 15 35 35 H 1.07996 * 126.59587 * 359.95768 * 19 18 17 36 36 H 1.07999 * 125.99490 * 179.97438 * 20 19 18 37 37 H 1.08001 * 125.64685 * 180.28876 * 22 21 20 38 38 H 1.09001 * 109.49700 * 178.68245 * 23 17 16 39 39 H 1.09004 * 109.51939 * 58.61059 * 23 17 16 40 40 H 1.09004 * 109.58526 * 246.15642 * 24 14 11 41 41 H 1.09000 * 109.58490 * 6.44025 * 24 14 11 42 42 H 1.09003 * 117.49601 * 214.97567 * 25 9 7 43 43 H 1.09007 * 117.49691 * 359.97438 * 25 9 7 44 44 H 1.08996 * 117.49665 * 252.50839 * 26 25 9 45 45 H 1.09000 * 117.49871 * 107.49306 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2593 -2.4944 0.1580 10 6 0.6798 -3.0839 -1.1294 11 16 1.8645 -2.8587 -2.4845 12 8 3.0717 -3.5572 -2.2128 13 8 1.8825 -1.5033 -2.9110 14 7 1.1960 -3.6787 -3.7584 15 6 1.5063 -5.0975 -3.9810 16 6 2.0039 -5.2791 -5.4139 17 6 0.9738 -4.7005 -6.3866 18 7 1.4353 -4.9008 -7.7624 19 6 0.7900 -5.6078 -8.7408 20 6 1.5586 -5.5366 -9.8443 21 7 2.6435 -4.8056 -9.5480 22 6 2.5733 -4.4162 -8.3043 23 6 0.8017 -3.2035 -6.1192 24 6 0.2861 -2.9998 -4.6911 25 6 1.7651 -3.4742 1.2187 26 6 0.4654 -2.7007 1.4495 27 1 -0.4850 0.8369 -0.0737 28 1 -0.2530 -2.5758 -1.3740 29 1 0.4878 -4.1475 -0.9877 30 1 2.2810 -5.4160 -3.2835 31 1 0.6079 -5.6961 -3.8306 32 1 2.1433 -6.3403 -5.6202 33 1 2.9530 -4.7571 -5.5362 34 1 0.0184 -5.2065 -6.2469 35 1 -0.1540 -6.1237 -8.6460 36 1 1.3400 -5.9888 -10.8004 37 1 3.3057 -3.8095 -7.7925 38 1 0.0853 -2.7874 -6.8275 39 1 1.7616 -2.7002 -6.2347 40 1 -0.7140 -3.4239 -4.5997 41 1 0.2540 -1.9350 -4.4603 42 1 1.6850 -4.5389 0.9992 43 1 2.6373 -3.1786 1.8018 44 1 0.4823 -1.8962 2.1846 45 1 -0.4698 -3.2565 1.3820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580257418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:28 Heat of formation + Delta-G solvation = -2.015980 kcal Electronic energy + Delta-G solvation = -28349.029404 eV Core-core repulsion = 24494.785070 eV Total energy + Delta-G solvation = -3854.244334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00777 -39.52461 -38.52648 -37.92365 -36.66442 -35.19171 -34.10784 -32.20039 -31.51793 -30.11866 -29.82570 -27.51710 -25.55485 -24.48688 -22.96327 -22.84112 -22.03504 -21.43448 -20.93726 -19.66141 -18.88954 -18.29317 -17.89473 -17.05739 -16.87832 -16.54716 -16.13877 -15.72066 -15.59429 -15.48447 -15.24776 -14.98948 -14.78040 -14.59666 -14.43687 -14.25512 -13.90506 -13.72052 -13.53211 -13.32849 -13.05208 -12.91962 -12.81527 -12.78894 -12.48569 -12.43290 -12.24758 -12.08817 -12.00777 -11.90557 -11.71538 -11.48865 -10.90780 -10.86773 -10.52764 -10.50291 -10.14143 -9.79893 -9.39510 -8.24441 -6.41404 -0.46658 1.18373 1.34360 1.40087 1.44726 1.84481 2.04985 2.25909 2.38094 3.05875 3.13256 3.31899 3.45885 3.48809 3.70192 3.71136 3.88056 3.96785 4.02665 4.06074 4.18199 4.29692 4.34001 4.48027 4.59090 4.60885 4.63333 4.66029 4.70629 4.76141 4.80619 4.82009 4.86896 4.98799 5.00532 5.07838 5.16415 5.20391 5.40670 5.46175 5.61284 5.67762 5.72115 5.89673 6.20513 6.29037 6.67563 7.18539 7.36351 8.82381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.003237 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.120913 B = 8648.899431 C = 9281.977105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.922 3.078 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.045 0.955 9 C 0.014 3.986 10 C -0.553 4.553 11 S 2.629 3.371 12 O -1.000 7.000 13 O -0.986 6.986 14 N -1.009 6.009 15 C 0.114 3.886 16 C -0.137 4.137 17 C 0.143 3.857 18 N -0.448 5.448 19 C -0.042 4.042 20 C -0.063 4.063 21 N -0.537 5.537 22 C 0.167 3.833 23 C -0.136 4.136 24 C 0.117 3.883 25 C -0.191 4.191 26 C -0.143 4.143 27 H 0.267 0.733 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.137 0.863 35 H 0.209 0.791 36 H 0.182 0.818 37 H 0.203 0.797 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -14.090 -11.916 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.143 4.143 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.063 0.937 9 C 0.012 3.988 10 C -0.685 4.685 11 S 2.728 3.272 12 O -0.990 6.990 13 O -0.976 6.976 14 N -0.848 5.848 15 C -0.011 4.011 16 C -0.176 4.176 17 C 0.041 3.959 18 N -0.130 5.130 19 C -0.175 4.175 20 C -0.210 4.210 21 N -0.257 5.257 22 C -0.116 4.116 23 C -0.176 4.176 24 C -0.008 4.008 25 C -0.228 4.228 26 C -0.181 4.181 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.155 0.845 35 H 0.226 0.774 36 H 0.199 0.801 37 H 0.220 0.780 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.780 -13.300 -12.293 18.731 hybrid contribution -0.408 1.071 0.882 1.446 sum -5.188 -12.229 -11.411 17.512 Atomic orbital electron populations 1.69971 1.06523 1.27931 1.47221 1.25371 0.95474 1.01225 0.92247 0.86105 0.79772 0.80956 0.78468 1.20481 1.19340 1.19241 1.20737 0.92925 0.90972 1.54982 0.93659 1.18325 1.00175 0.93907 0.86377 1.29877 1.15723 1.08494 1.14448 1.04177 0.75515 0.72672 0.74822 1.93419 1.44318 1.75195 1.86060 1.93463 1.86983 1.36528 1.80630 1.57927 1.63054 1.21305 1.42465 1.21561 1.02861 0.80075 0.96619 1.22153 0.98364 1.02946 0.94172 1.21580 1.00172 0.97094 0.77101 1.45859 1.17692 1.38258 1.11169 1.23287 1.02266 1.03416 0.88575 1.22716 0.93048 1.04597 1.00594 1.70268 1.25333 1.16170 1.13879 1.25029 0.91986 1.03634 0.90907 1.22212 1.03007 0.95067 0.97312 1.21544 0.93737 0.98304 0.87252 1.23211 0.97819 0.96949 1.04789 1.22478 0.93889 1.00976 1.00800 0.92384 0.85855 0.84576 0.89157 0.87196 0.88014 0.92376 0.84510 0.77423 0.80117 0.78041 0.88545 0.92395 0.87494 0.90155 0.87845 0.90439 0.91940 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.82 12.96 21.45 0.28 -47.54 16 2 C 0.06 3.39 5.39 84.65 0.46 3.85 16 3 Si 0.92 44.29 29.55 68.60 2.03 46.32 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.56 -30.51 6.89 25.60 0.18 -30.33 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.01 0.65 1.64 -52.93 -0.09 0.57 16 10 C -0.55 -21.01 6.29 71.98 0.45 -20.56 16 11 S 2.63 102.80 4.63 -56.49 -0.26 102.54 16 12 O -1.00 -43.43 16.58 -127.65 -2.12 -45.54 16 13 O -0.99 -47.41 15.72 -127.65 -2.01 -49.41 16 14 N -1.01 -25.82 3.23 -513.84 -1.66 -27.47 16 15 C 0.11 2.08 6.40 86.22 0.55 2.63 16 16 C -0.14 -2.20 5.38 30.53 0.16 -2.03 16 17 C 0.14 1.99 2.82 45.02 0.13 2.12 16 18 N -0.45 -7.69 2.62 -506.41 -1.32 -9.02 16 19 C -0.04 -0.64 11.54 83.09 0.96 0.32 16 20 C -0.06 -1.25 11.87 83.52 0.99 -0.26 16 21 N -0.54 -14.04 11.25 -200.30 -2.25 -16.29 16 22 C 0.17 3.75 11.61 180.26 2.09 5.84 16 23 C -0.14 -2.44 5.39 30.67 0.17 -2.27 16 24 C 0.12 2.47 6.43 86.36 0.56 3.03 16 25 C -0.19 -7.68 9.88 30.59 0.30 -7.38 16 26 C -0.14 -6.12 9.50 30.59 0.29 -5.83 16 27 H 0.27 13.80 8.32 -92.70 -0.77 13.03 16 28 H 0.12 4.78 8.14 -2.39 -0.02 4.76 16 29 H 0.14 3.92 7.95 -2.39 -0.02 3.90 16 30 H 0.09 1.92 6.85 -2.39 -0.02 1.90 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.19 7.99 -2.39 -0.02 1.17 16 34 H 0.14 1.07 8.08 -2.38 -0.02 1.05 16 35 H 0.21 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.29 7.98 -2.39 -0.02 1.27 16 40 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 2.16 6.86 -2.39 -0.02 2.15 16 42 H 0.10 3.42 8.08 -2.39 -0.02 3.40 16 43 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -75.83 378.13 0.85 -74.97 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.97 Total: 21.76 kcal Atomic # 6 Polarization: -57.51 SS G_CDS: 7.20 Total: -50.31 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -4.96 Total: -100.33 kcal Atomic # 8 Polarization: -90.83 SS G_CDS: -4.12 Total: -94.96 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 102.80 SS G_CDS: -0.26 Total: 102.54 kcal Total: -75.83 0.85 -74.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580257418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.959 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds