Wall clock time and date at job start Tue Mar 31 2020 22:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99852 * 2 1 4 4 H 1.48496 * 109.46930 * 273.63167 * 3 2 1 5 5 H 1.48498 * 109.47013 * 33.63200 * 3 2 1 6 6 H 1.48499 * 109.46960 * 153.63044 * 3 2 1 7 7 C 1.37871 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00510 * 353.94023 * 7 2 1 9 9 C 1.50704 * 119.99971 * 173.93734 * 7 2 1 10 10 C 1.53003 * 115.55063 * 92.15216 * 9 7 2 11 11 S 1.81396 * 109.47042 * 39.93770 * 10 9 7 12 12 O 1.42103 * 110.54156 * 61.07307 * 11 10 9 13 13 O 1.42097 * 110.54651 * 284.32127 * 11 10 9 14 14 N 1.65603 * 104.45056 * 172.69325 * 11 10 9 15 15 C 1.46925 * 120.63284 * 269.98078 * 14 11 10 16 16 C 1.53188 * 108.77287 * 233.62902 * 15 14 11 17 17 C 1.53037 * 109.31482 * 305.36119 * 16 15 14 18 18 C 1.53039 * 109.53829 * 61.36948 * 17 16 15 19 19 H 1.09002 * 109.49715 * 58.58418 * 18 17 16 20 20 C 1.50696 * 109.50412 * 178.65130 * 18 17 16 21 21 C 1.39871 * 125.89457 * 34.71421 * 20 18 17 22 22 C 1.35314 * 107.92071 * 179.86891 * 21 20 18 23 23 N 1.34951 * 107.74624 * 0.39170 * 22 21 20 24 24 H 0.96999 * 126.03998 * 179.75588 * 23 22 21 25 25 N 1.30836 * 125.90389 * 215.02272 * 20 18 17 26 26 C 1.46931 * 120.62609 * 89.99871 * 14 11 10 27 27 C 1.53001 * 117.51525 * 237.85163 * 9 7 2 28 28 C 1.53001 * 117.49789 * 306.48177 * 9 7 2 29 29 H 0.96996 * 120.00142 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46695 * 279.93748 * 10 9 7 31 31 H 1.08998 * 109.47285 * 159.93814 * 10 9 7 32 32 H 1.09000 * 109.58364 * 353.41856 * 15 14 11 33 33 H 1.09005 * 109.58270 * 113.69849 * 15 14 11 34 34 H 1.09009 * 109.49554 * 185.41546 * 16 15 14 35 35 H 1.08990 * 109.50131 * 65.31766 * 16 15 14 36 36 H 1.09007 * 109.46376 * 301.35166 * 17 16 15 37 37 H 1.08998 * 109.46168 * 181.39047 * 17 16 15 38 38 H 1.08006 * 126.03996 * 359.97438 * 21 20 18 39 39 H 1.07997 * 126.13200 * 180.15184 * 22 21 20 40 40 H 1.08994 * 109.58901 * 6.58941 * 26 14 11 41 41 H 1.09000 * 109.58372 * 246.16099 * 26 14 11 42 42 H 1.09003 * 117.49476 * 214.96611 * 27 9 7 43 43 H 1.08996 * 117.50133 * 359.97438 * 27 9 7 44 44 H 1.09004 * 117.49856 * 359.97247 * 28 9 7 45 45 H 1.08998 * 117.49975 * 144.99950 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4198 2.0908 -1.3972 5 1 1.4871 2.6293 0.7754 6 1 3.5830 1.4193 0.6219 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0978 9 6 3.5052 -1.1976 -0.1384 10 6 4.2887 -1.1787 1.1757 11 16 3.4708 -2.2578 2.3828 12 8 3.4351 -3.5975 1.9103 13 8 2.3048 -1.6325 2.9012 14 7 4.5142 -2.3057 3.6679 15 6 5.5631 -3.3318 3.7427 16 6 5.4477 -4.0577 5.0867 17 6 5.4901 -3.0318 6.2214 18 6 4.3059 -2.0717 6.0879 19 1 3.3743 -2.6369 6.1171 20 6 4.3297 -1.0823 7.2243 21 6 5.4756 -0.5486 7.8231 22 6 5.0784 0.3004 8.7990 23 7 3.7291 0.2973 8.8229 24 1 3.1678 0.8108 9.4247 25 7 3.2823 -0.5784 7.8250 26 6 4.4082 -1.3231 4.7552 27 6 4.1058 -1.9805 -1.3077 28 6 4.1069 -0.4506 -1.3304 29 1 -0.4850 0.8400 0.0004 30 1 4.3234 -0.1606 1.5633 31 1 5.3035 -1.5349 0.9989 32 1 5.4343 -4.0459 2.9293 33 1 6.5424 -2.8597 3.6628 34 1 6.2782 -4.7554 5.1958 35 1 4.5055 -4.6042 5.1253 36 1 6.4219 -2.4687 6.1673 37 1 5.4330 -3.5478 7.1799 38 1 6.4969 -0.7731 7.5530 39 1 5.7253 0.8745 9.4458 40 1 3.5174 -0.7121 4.6100 41 1 5.2934 -0.6871 4.7603 42 1 5.0591 -2.4820 -1.1408 43 1 3.4155 -2.4935 -1.9773 44 1 3.4173 0.0431 -2.0152 45 1 5.0609 0.0543 -1.1785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590743747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:16 Heat of formation + Delta-G solvation = 29.808608 kcal Electronic energy + Delta-G solvation = -28528.180260 eV Core-core repulsion = 24675.315944 eV Total energy + Delta-G solvation = -3852.864316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35034 -38.40042 -37.08338 -36.23970 -34.95138 -33.40589 -32.15716 -31.84183 -30.12892 -29.74126 -28.46656 -25.55203 -24.41655 -23.91228 -21.71994 -21.68196 -20.92703 -19.35931 -19.24073 -18.25213 -18.14416 -17.14466 -16.51218 -15.69630 -15.29480 -15.00052 -14.78329 -14.66201 -14.34797 -14.17382 -13.85389 -13.79129 -13.69195 -13.39051 -12.96052 -12.92372 -12.58527 -12.51807 -12.42989 -11.46762 -11.43226 -11.26072 -11.17280 -11.07830 -11.02634 -10.79708 -10.75684 -10.58151 -10.54413 -10.37270 -10.32740 -10.02778 -9.71914 -9.57416 -9.11461 -8.88674 -8.78414 -8.61615 -8.40567 -6.16746 -4.27719 1.03899 1.76986 2.64402 2.74194 3.24889 3.34088 3.35882 3.41768 4.36581 4.38634 4.59467 4.65337 4.77079 4.81121 4.84190 4.99942 5.02641 5.10290 5.21678 5.29301 5.36387 5.38049 5.55074 5.57013 5.59326 5.70202 5.72957 5.81992 5.88074 5.92202 6.01815 6.06160 6.08177 6.09990 6.22766 6.34519 6.35897 6.43004 6.48704 6.63087 6.84145 6.90295 7.08352 7.12785 7.57833 7.61536 8.35923 8.86726 9.45537 10.94823 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004130 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.760715 B = 6777.901785 C = 7881.890417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.102 3.898 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.535 4.535 8 H 0.087 0.913 9 C 0.009 3.991 10 C -0.584 4.584 11 S 2.625 3.375 12 O -0.962 6.962 13 O -0.931 6.931 14 N -1.014 6.014 15 C 0.115 3.885 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.021 4.021 19 H 0.093 0.907 20 C 0.088 3.912 21 C -0.266 4.266 22 C 0.053 3.947 23 N -0.480 5.480 24 H 0.438 0.562 25 N -0.284 5.284 26 C 0.130 3.870 27 C -0.173 4.173 28 C -0.189 4.189 29 H 0.269 0.731 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.147 0.853 39 H 0.174 0.826 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.492 -0.746 15.812 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.105 4.105 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.573 4.573 8 H 0.105 0.895 9 C 0.007 3.993 10 C -0.715 4.715 11 S 2.722 3.278 12 O -0.953 6.953 13 O -0.921 6.921 14 N -0.849 5.849 15 C -0.011 4.011 16 C -0.170 4.170 17 C -0.142 4.142 18 C -0.043 4.043 19 H 0.111 0.889 20 C -0.080 4.080 21 C -0.295 4.295 22 C -0.095 4.095 23 N -0.188 5.188 24 H 0.282 0.718 25 N -0.107 5.107 26 C 0.003 3.997 27 C -0.210 4.210 28 C -0.228 4.228 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.192 0.808 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.219 -1.064 15.842 21.313 hybrid contribution 1.653 1.869 0.203 2.503 sum 15.871 0.805 16.045 22.583 Atomic orbital electron populations 1.69879 1.06540 1.27520 1.46723 1.24917 0.94460 0.98984 0.92176 0.86912 0.80788 0.83553 0.78411 1.20160 1.21527 1.18218 1.20411 0.86372 0.95664 1.54812 0.89471 1.18758 0.94491 1.02243 0.83818 1.30363 1.10290 1.15711 1.15122 1.04736 0.74047 0.75480 0.73576 1.93477 1.86065 1.34387 1.81357 1.93571 1.43285 1.78243 1.76971 1.58326 1.50121 1.40139 1.36343 1.21412 0.90503 0.90207 0.98977 1.21866 1.02988 0.97775 0.94402 1.21484 0.97474 0.96567 0.98659 1.19890 1.01051 0.93597 0.89811 0.88910 1.22220 0.90746 0.97822 0.97210 1.21416 0.99880 1.05729 1.02487 1.22576 0.85543 1.00735 1.00605 1.46396 1.05490 1.37046 1.29872 0.71844 1.77433 1.22421 1.08062 1.02814 1.21311 1.03202 0.90283 0.84902 1.22961 1.00998 0.93152 1.03895 1.22946 1.01140 0.94762 1.03914 0.92149 0.86149 0.87624 0.88743 0.91803 0.90628 0.91055 0.91272 0.91548 0.83491 0.80849 0.88352 0.91455 0.90582 0.88783 0.89010 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.03 13.96 55.43 0.77 -26.26 16 2 C 0.10 2.97 5.46 -17.82 -0.10 2.87 16 3 Si 0.88 21.75 24.98 -169.99 -4.25 17.50 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -5.88 5.46 56.52 0.31 -5.58 16 7 C -0.54 -15.29 7.55 -34.44 -0.26 -15.55 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 9 C 0.01 0.22 1.12 -155.66 -0.17 0.05 16 10 C -0.58 -11.68 6.15 37.16 0.23 -11.45 16 11 S 2.63 55.32 4.59 -107.50 -0.49 54.83 16 12 O -0.96 -22.05 16.59 -57.54 -0.95 -23.00 16 13 O -0.93 -23.57 15.80 -57.54 -0.91 -24.48 16 14 N -1.01 -15.76 3.22 -113.52 -0.37 -16.13 16 15 C 0.11 1.39 6.43 -3.71 -0.02 1.37 16 16 C -0.13 -1.36 6.08 -26.62 -0.16 -1.52 16 17 C -0.10 -1.02 4.73 -26.69 -0.13 -1.15 16 18 C -0.02 -0.28 2.80 -91.65 -0.26 -0.53 16 19 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 20 C 0.09 1.12 6.14 -82.41 -0.51 0.61 16 21 C -0.27 -2.60 9.98 -40.01 -0.40 -3.00 16 22 C 0.05 0.42 11.99 -17.22 -0.21 0.22 16 23 N -0.48 -4.66 7.36 30.44 0.22 -4.44 16 24 H 0.44 2.82 8.96 -182.61 -1.64 1.18 16 25 N -0.28 -3.99 12.70 33.67 0.43 -3.56 16 26 C 0.13 1.87 5.70 -3.70 -0.02 1.85 16 27 C -0.17 -3.56 9.88 -26.73 -0.26 -3.83 16 28 C -0.19 -3.99 7.54 -26.73 -0.20 -4.19 16 29 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.12 2.32 6.56 -51.93 -0.34 1.98 16 31 H 0.11 1.68 7.95 -51.92 -0.41 1.27 16 32 H 0.09 1.21 6.86 -51.93 -0.36 0.85 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.57 7.37 -51.92 -0.38 0.19 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.15 1.12 7.46 -52.48 -0.39 0.73 16 39 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.10 1.65 6.86 -51.93 -0.36 1.30 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 44 H 0.09 2.02 7.01 -51.93 -0.36 1.66 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -37.40 367.10 -10.60 -48.00 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.12 Total: 6.26 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: -2.47 Total: -34.26 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 1.06 Total: -50.39 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.86 Total: -47.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.25 Total: 17.50 kcal Atomic # 16 Polarization: 55.32 SS G_CDS: -0.49 Total: 54.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.40 -10.60 -48.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590743747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.809 kcal (2) G-P(sol) polarization free energy of solvation -37.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds