Wall clock time and date at job start Tue Mar 31 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99852 * 2 1 4 4 H 1.48496 * 109.46930 * 273.63167 * 3 2 1 5 5 H 1.48498 * 109.47013 * 33.63200 * 3 2 1 6 6 H 1.48499 * 109.46960 * 153.63044 * 3 2 1 7 7 C 1.37871 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00510 * 353.94023 * 7 2 1 9 9 C 1.50704 * 119.99971 * 173.93734 * 7 2 1 10 10 C 1.53003 * 115.55063 * 92.15216 * 9 7 2 11 11 S 1.81396 * 109.47042 * 39.93770 * 10 9 7 12 12 O 1.42103 * 110.54156 * 61.07307 * 11 10 9 13 13 O 1.42097 * 110.54651 * 284.32127 * 11 10 9 14 14 N 1.65603 * 104.45056 * 172.69325 * 11 10 9 15 15 C 1.46925 * 120.63284 * 269.98078 * 14 11 10 16 16 C 1.53188 * 108.77287 * 233.62902 * 15 14 11 17 17 C 1.53037 * 109.31482 * 305.36119 * 16 15 14 18 18 C 1.53039 * 109.53829 * 61.36948 * 17 16 15 19 19 H 1.09002 * 109.49715 * 58.58418 * 18 17 16 20 20 C 1.50696 * 109.50412 * 178.65130 * 18 17 16 21 21 C 1.39871 * 125.89457 * 34.71421 * 20 18 17 22 22 C 1.35314 * 107.92071 * 179.86891 * 21 20 18 23 23 N 1.34951 * 107.74624 * 0.39170 * 22 21 20 24 24 H 0.96999 * 126.03998 * 179.75588 * 23 22 21 25 25 N 1.30836 * 125.90389 * 215.02272 * 20 18 17 26 26 C 1.46931 * 120.62609 * 89.99871 * 14 11 10 27 27 C 1.53001 * 117.51525 * 237.85163 * 9 7 2 28 28 C 1.53001 * 117.49789 * 306.48177 * 9 7 2 29 29 H 0.96996 * 120.00142 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46695 * 279.93748 * 10 9 7 31 31 H 1.08998 * 109.47285 * 159.93814 * 10 9 7 32 32 H 1.09000 * 109.58364 * 353.41856 * 15 14 11 33 33 H 1.09005 * 109.58270 * 113.69849 * 15 14 11 34 34 H 1.09009 * 109.49554 * 185.41546 * 16 15 14 35 35 H 1.08990 * 109.50131 * 65.31766 * 16 15 14 36 36 H 1.09007 * 109.46376 * 301.35166 * 17 16 15 37 37 H 1.08998 * 109.46168 * 181.39047 * 17 16 15 38 38 H 1.08006 * 126.03996 * 359.97438 * 21 20 18 39 39 H 1.07997 * 126.13200 * 180.15184 * 22 21 20 40 40 H 1.08994 * 109.58901 * 6.58941 * 26 14 11 41 41 H 1.09000 * 109.58372 * 246.16099 * 26 14 11 42 42 H 1.09003 * 117.49476 * 214.96611 * 27 9 7 43 43 H 1.08996 * 117.50133 * 359.97438 * 27 9 7 44 44 H 1.09004 * 117.49856 * 359.97247 * 28 9 7 45 45 H 1.08998 * 117.49975 * 144.99950 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4198 2.0908 -1.3972 5 1 1.4871 2.6293 0.7754 6 1 3.5830 1.4193 0.6219 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0978 9 6 3.5052 -1.1976 -0.1384 10 6 4.2887 -1.1787 1.1757 11 16 3.4708 -2.2578 2.3828 12 8 3.4351 -3.5975 1.9103 13 8 2.3048 -1.6325 2.9012 14 7 4.5142 -2.3057 3.6679 15 6 5.5631 -3.3318 3.7427 16 6 5.4477 -4.0577 5.0867 17 6 5.4901 -3.0318 6.2214 18 6 4.3059 -2.0717 6.0879 19 1 3.3743 -2.6369 6.1171 20 6 4.3297 -1.0823 7.2243 21 6 5.4756 -0.5486 7.8231 22 6 5.0784 0.3004 8.7990 23 7 3.7291 0.2973 8.8229 24 1 3.1678 0.8108 9.4247 25 7 3.2823 -0.5784 7.8250 26 6 4.4082 -1.3231 4.7552 27 6 4.1058 -1.9805 -1.3077 28 6 4.1069 -0.4506 -1.3304 29 1 -0.4850 0.8400 0.0004 30 1 4.3234 -0.1606 1.5633 31 1 5.3035 -1.5349 0.9989 32 1 5.4343 -4.0459 2.9293 33 1 6.5424 -2.8597 3.6628 34 1 6.2782 -4.7554 5.1958 35 1 4.5055 -4.6042 5.1253 36 1 6.4219 -2.4687 6.1673 37 1 5.4330 -3.5478 7.1799 38 1 6.4969 -0.7731 7.5530 39 1 5.7253 0.8745 9.4458 40 1 3.5174 -0.7121 4.6100 41 1 5.2934 -0.6871 4.7603 42 1 5.0591 -2.4820 -1.1408 43 1 3.4155 -2.4935 -1.9773 44 1 3.4173 0.0431 -2.0152 45 1 5.0609 0.0543 -1.1785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590743747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:15 Heat of formation + Delta-G solvation = 0.074579 kcal Electronic energy + Delta-G solvation = -28529.469625 eV Core-core repulsion = 24675.315944 eV Total energy + Delta-G solvation = -3854.153681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11776 -39.39445 -38.82631 -37.99218 -36.71500 -34.40585 -34.31012 -32.78925 -30.92545 -30.57311 -30.09071 -27.66256 -25.44554 -24.89072 -23.35016 -22.42699 -21.89113 -21.17172 -20.13942 -19.67467 -18.94441 -18.68681 -18.32458 -17.20837 -16.99070 -16.59939 -15.92296 -15.65172 -15.49965 -15.46381 -15.11828 -14.87008 -14.76185 -14.68324 -14.43380 -14.27043 -14.16561 -13.78001 -13.36423 -13.18876 -12.93130 -12.88007 -12.74763 -12.65062 -12.28315 -12.27320 -12.04590 -11.88599 -11.80799 -11.70700 -11.70132 -11.54719 -11.26724 -10.93708 -10.73080 -10.47035 -10.30871 -9.77328 -9.57297 -8.38353 -6.53865 -0.55365 1.04590 1.28577 1.33017 1.44249 1.85802 1.99504 2.13047 2.31039 2.93921 3.04144 3.17064 3.38764 3.54961 3.75480 3.85304 3.92300 4.15072 4.15783 4.20821 4.28706 4.35515 4.40217 4.44214 4.49111 4.61772 4.65198 4.66257 4.85844 4.86787 4.88581 4.92129 4.97192 5.01407 5.05933 5.17295 5.24174 5.26831 5.35017 5.47373 5.52317 5.60624 5.69893 5.80801 6.12274 6.55409 6.59948 6.80372 7.22958 8.78647 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004130 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.760715 B = 6777.901785 C = 7881.890417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.036 3.964 3 Si 0.930 3.070 4 H -0.255 1.255 5 H -0.297 1.297 6 H -0.216 1.216 7 C -0.536 4.536 8 H 0.025 0.975 9 C -0.033 4.033 10 C -0.570 4.570 11 S 2.617 3.383 12 O -0.997 6.997 13 O -0.995 6.995 14 N -1.004 6.004 15 C 0.103 3.897 16 C -0.132 4.132 17 C -0.093 4.093 18 C -0.022 4.022 19 H 0.052 0.948 20 C 0.073 3.927 21 C -0.276 4.276 22 C 0.071 3.929 23 N -0.478 5.478 24 H 0.449 0.551 25 N -0.350 5.350 26 C 0.128 3.872 27 C -0.164 4.164 28 C -0.173 4.173 29 H 0.269 0.731 30 H 0.133 0.867 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.175 0.825 39 H 0.223 0.777 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.987 0.982 16.899 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.165 4.165 3 Si 0.753 3.247 4 H -0.179 1.179 5 H -0.224 1.224 6 H -0.138 1.138 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.035 4.035 10 C -0.703 4.703 11 S 2.717 3.283 12 O -0.987 6.987 13 O -0.985 6.985 14 N -0.843 5.843 15 C -0.021 4.021 16 C -0.171 4.171 17 C -0.131 4.131 18 C -0.044 4.044 19 H 0.071 0.929 20 C -0.094 4.094 21 C -0.305 4.305 22 C -0.077 4.077 23 N -0.187 5.187 24 H 0.294 0.706 25 N -0.175 5.175 26 C 0.002 3.998 27 C -0.201 4.201 28 C -0.211 4.211 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.179 0.821 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.192 0.808 39 H 0.239 0.761 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 20.718 0.617 16.930 26.762 hybrid contribution -0.412 1.207 -0.068 1.277 sum 20.306 1.824 16.862 26.457 Atomic orbital electron populations 1.70055 1.08942 1.28560 1.49667 1.25972 0.95226 1.03524 0.91755 0.86034 0.81100 0.77846 0.79757 1.17913 1.22405 1.13808 1.20537 0.89841 0.93250 1.53736 0.95626 1.18714 0.91742 1.06502 0.86562 1.30149 1.12085 1.15964 1.12056 1.04471 0.74294 0.74913 0.74639 1.93418 1.86861 1.36117 1.82309 1.93496 1.47576 1.79060 1.78351 1.57831 1.50138 1.41410 1.34890 1.21851 0.91079 0.89638 0.99522 1.21925 1.03061 0.98269 0.93846 1.21471 0.97064 0.95848 0.98721 1.19849 1.00910 0.94074 0.89589 0.92913 1.22291 0.91915 0.97965 0.97232 1.21753 1.00097 1.05982 1.02706 1.23365 0.84868 0.99517 0.99912 1.46447 1.06730 1.36335 1.29155 0.70571 1.77347 1.24463 1.10470 1.05187 1.21441 1.03156 0.90246 0.84979 1.23083 1.02085 0.93633 1.01271 1.23053 1.02168 0.95050 1.00807 0.92208 0.84885 0.82121 0.89786 0.87173 0.86972 0.93907 0.88069 0.90702 0.80775 0.76096 0.92113 0.87601 0.86286 0.90533 0.90519 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.97 13.96 21.45 0.30 -61.67 16 2 C 0.04 2.18 5.46 84.65 0.46 2.64 16 3 Si 0.93 44.34 24.98 68.60 1.71 46.05 16 4 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.22 -8.73 5.46 99.48 0.54 -8.19 16 7 C -0.54 -32.09 7.55 25.60 0.19 -31.90 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C -0.03 -1.49 1.12 -52.92 -0.06 -1.55 16 10 C -0.57 -21.09 6.15 71.98 0.44 -20.64 16 11 S 2.62 113.05 4.59 -56.49 -0.26 112.79 16 12 O -1.00 -47.63 16.59 -127.65 -2.12 -49.75 16 13 O -0.99 -54.44 15.80 -127.65 -2.02 -56.46 16 14 N -1.00 -30.25 3.22 -513.05 -1.65 -31.90 16 15 C 0.10 2.19 6.43 86.36 0.56 2.75 16 16 C -0.13 -2.43 6.08 30.67 0.19 -2.25 16 17 C -0.09 -1.57 4.73 30.62 0.14 -1.43 16 18 C -0.02 -0.57 2.80 -11.46 -0.03 -0.60 16 19 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 20 C 0.07 1.79 6.14 43.10 0.26 2.05 16 21 C -0.28 -4.44 9.98 21.99 0.22 -4.22 16 22 C 0.07 0.88 11.99 83.54 1.00 1.88 16 23 N -0.48 -8.63 7.36 -57.59 -0.42 -9.06 16 24 H 0.45 5.31 8.96 -213.33 -1.91 3.40 16 25 N -0.35 -10.06 12.70 -47.39 -0.60 -10.66 16 26 C 0.13 3.60 5.70 86.36 0.49 4.09 16 27 C -0.16 -6.30 9.88 30.60 0.30 -6.00 16 28 C -0.17 -6.57 7.54 30.60 0.23 -6.34 16 29 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 30 H 0.13 4.59 6.56 -2.39 -0.02 4.57 16 31 H 0.16 4.12 7.95 -2.39 -0.02 4.11 16 32 H 0.08 1.99 6.86 -2.39 -0.02 1.97 16 33 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.11 7.37 -2.38 -0.02 1.09 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.17 1.71 7.46 -2.91 -0.02 1.68 16 39 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.06 2.16 6.86 -2.39 -0.02 2.15 16 41 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.12 3.56 8.08 -2.39 -0.02 3.54 16 43 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.08 3.16 7.01 -2.39 -0.02 3.14 16 45 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -93.95 367.10 -1.72 -95.67 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -1.07 Total: 26.51 kcal Atomic # 6 Polarization: -65.92 SS G_CDS: 4.41 Total: -61.51 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -2.38 Total: -113.29 kcal Atomic # 8 Polarization: -102.08 SS G_CDS: -4.13 Total: -106.21 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.71 Total: 46.05 kcal Atomic # 16 Polarization: 113.05 SS G_CDS: -0.26 Total: 112.79 kcal Total: -93.95 -1.72 -95.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590743747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.746 kcal (2) G-P(sol) polarization free energy of solvation -93.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds