Wall clock time and date at job start Tue Mar 31 2020 22:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86800 * 119.99847 * 2 1
4 4 H 1.48502 * 109.46908 * 85.85168 * 3 2 1
5 5 H 1.48502 * 109.46852 * 205.84509 * 3 2 1
6 6 H 1.48499 * 109.47548 * 325.84637 * 3 2 1
7 7 C 1.37872 * 119.99781 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00367 * 3.14104 * 7 2 1
9 9 C 1.50703 * 119.99826 * 183.12805 * 7 2 1
10 10 C 1.52997 * 115.55348 * 271.74888 * 9 7 2
11 11 S 1.81400 * 109.47273 * 294.28261 * 10 9 7
12 12 O 1.42105 * 110.53905 * 297.68601 * 11 10 9
13 13 O 1.42100 * 110.54509 * 74.43621 * 11 10 9
14 14 N 1.65599 * 104.45044 * 186.06126 * 11 10 9
15 15 C 1.46926 * 120.62775 * 269.72127 * 14 11 10
16 16 C 1.53628 * 108.54152 * 126.37037 * 15 14 11
17 17 C 1.53037 * 109.24458 * 54.85450 * 16 15 14
18 18 C 1.53041 * 109.53597 * 298.50746 * 17 16 15
19 19 H 1.08998 * 109.52810 * 301.40333 * 18 17 16
20 20 C 1.50702 * 109.49708 * 181.31607 * 18 17 16
21 21 C 1.39871 * 125.90021 * 325.16682 * 20 18 17
22 22 C 1.35314 * 107.92084 * 179.97438 * 21 20 18
23 23 N 1.34950 * 107.74575 * 0.02562 * 22 21 20
24 24 H 0.97002 * 126.03738 * 179.97438 * 23 22 21
25 25 N 1.30841 * 125.89532 * 144.85240 * 20 18 17
26 26 C 1.46923 * 120.63029 * 89.99611 * 14 11 10
27 27 C 1.53004 * 117.49526 * 126.08091 * 9 7 2
28 28 C 1.53002 * 117.49485 * 57.42541 * 9 7 2
29 29 H 0.97003 * 119.99705 * 0.02562 * 1 2 3
30 30 H 1.09003 * 109.47010 * 54.28016 * 10 9 7
31 31 H 1.09000 * 109.47154 * 174.27965 * 10 9 7
32 32 H 1.09003 * 109.58529 * 246.19878 * 15 14 11
33 33 H 1.08988 * 109.58903 * 6.62096 * 15 14 11
34 34 H 1.08996 * 109.63295 * 294.85798 * 16 15 14
35 35 H 1.08999 * 109.45393 * 174.73708 * 16 15 14
36 36 H 1.09001 * 109.45834 * 178.49069 * 17 16 15
37 37 H 1.08996 * 109.45190 * 58.52512 * 17 16 15
38 38 H 1.08004 * 126.03661 * 359.97438 * 21 20 18
39 39 H 1.07996 * 126.12519 * 180.02562 * 22 21 20
40 40 H 1.09001 * 109.59172 * 353.37812 * 26 14 11
41 41 H 1.09005 * 109.58671 * 113.80091 * 26 14 11
42 42 H 1.09002 * 117.49621 * 359.97438 * 27 9 7
43 43 H 1.08998 * 117.49689 * 145.02365 * 27 9 7
44 44 H 1.08994 * 117.49441 * 214.97400 * 28 9 7
45 45 H 1.08997 * 117.49696 * 359.97438 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4089 2.0970 1.3964
5 1 3.5879 1.4164 -0.6104
6 1 1.4934 2.6258 -0.7860
7 6 2.0045 -1.1940 0.0005
8 1 1.4658 -2.1287 -0.0503
9 6 3.5099 -1.1950 0.0718
10 6 4.2343 -1.1163 -1.2736
11 16 3.9043 -2.6237 -2.2271
12 8 4.4105 -3.7644 -1.5474
13 8 2.5811 -2.6067 -2.7449
14 7 4.8686 -2.4850 -3.5662
15 6 4.3676 -1.8360 -4.7855
16 6 5.3519 -0.7276 -5.1887
17 6 6.7547 -1.3239 -5.3256
18 6 7.2008 -1.8971 -3.9785
19 1 7.1921 -1.1084 -3.2261
20 6 8.5949 -2.4551 -4.1062
21 6 9.1250 -3.0873 -5.2357
22 6 10.4000 -3.4423 -4.9542
23 7 10.6671 -3.0493 -3.6911
24 1 11.5063 -3.1726 -3.2204
25 7 9.5202 -2.4268 -3.1816
26 6 6.2394 -3.0138 -3.5597
27 6 4.1641 -2.0239 1.1790
28 6 4.1609 -0.4957 1.2668
29 1 -0.4850 0.8401 -0.0004
30 1 3.8761 -0.2494 -1.8289
31 1 5.3068 -1.0212 -1.1037
32 1 4.2930 -2.5714 -5.5866
33 1 3.3864 -1.4028 -4.5920
34 1 5.3602 0.0504 -4.4253
35 1 5.0445 -0.2983 -6.1422
36 1 7.4512 -0.5458 -5.6377
37 1 6.7400 -2.1186 -6.0714
38 1 8.6079 -3.2612 -6.1678
39 1 11.0817 -3.9493 -5.6209
40 1 6.4936 -3.3579 -2.5571
41 1 6.3144 -3.8434 -4.2628
42 1 3.5057 -2.5681 1.8560
43 1 5.1108 -2.5127 0.9490
44 1 5.1055 0.0202 1.0945
45 1 3.5005 -0.0346 2.0011
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590743748.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:41:20
Heat of formation + Delta-G solvation = 28.928977 kcal
Electronic energy + Delta-G solvation = -28591.676154 eV
Core-core repulsion = 24738.773694 eV
Total energy + Delta-G solvation = -3852.902460 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.44782 -38.47587 -37.10008 -36.38898 -35.14685 -33.47328 -32.13866 -31.90236
-30.22082 -29.82255 -28.46064 -25.52737 -24.49898 -23.97570 -21.79412 -21.68900
-21.00981 -19.49029 -19.11155 -18.38870 -18.25102 -17.19505 -16.60801 -15.82836
-15.30990 -15.06559 -14.85692 -14.80790 -14.41281 -14.26270 -13.90708 -13.82977
-13.75959 -13.38378 -13.04022 -12.95184 -12.62752 -12.51162 -12.26781 -11.55403
-11.48958 -11.37382 -11.30532 -11.18238 -11.12191 -10.94446 -10.87331 -10.71327
-10.62145 -10.45956 -10.34528 -10.07757 -9.72915 -9.61153 -9.13041 -8.97651
-8.84143 -8.64666 -8.37984 -6.14431 -4.22115 0.92903 1.66671 2.54009
2.63761 3.24143 3.25275 3.34196 3.37906 4.28833 4.37406 4.49722
4.51756 4.69206 4.76362 4.84231 4.87531 4.93754 5.06666 5.15293
5.20695 5.27501 5.33231 5.47138 5.48272 5.50910 5.68102 5.71334
5.79975 5.82958 5.87705 5.97419 5.98210 6.01989 6.07377 6.22246
6.27633 6.30377 6.38524 6.46178 6.68239 6.80223 6.92038 7.02888
7.09214 7.46417 7.62224 8.39550 8.90609 9.46631 10.96997
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.016288 B = 0.003785 C = 0.003635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1718.682582 B = 7394.956168 C = 7701.017750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.088 3.912
3 Si 0.873 3.127
4 H -0.276 1.276
5 H -0.255 1.255
6 H -0.290 1.290
7 C -0.508 4.508
8 H 0.086 0.914
9 C 0.002 3.998
10 C -0.575 4.575
11 S 2.612 3.388
12 O -0.964 6.964
13 O -0.937 6.937
14 N -1.009 6.009
15 C 0.118 3.882
16 C -0.138 4.138
17 C -0.103 4.103
18 C -0.027 4.027
19 H 0.090 0.910
20 C 0.088 3.912
21 C -0.264 4.264
22 C 0.054 3.946
23 N -0.480 5.480
24 H 0.438 0.562
25 N -0.289 5.289
26 C 0.135 3.865
27 C -0.178 4.178
28 C -0.185 4.185
29 H 0.267 0.733
30 H 0.125 0.875
31 H 0.105 0.895
32 H 0.071 0.929
33 H 0.096 0.904
34 H 0.070 0.930
35 H 0.077 0.923
36 H 0.066 0.934
37 H 0.070 0.930
38 H 0.148 0.852
39 H 0.175 0.825
40 H 0.092 0.908
41 H 0.073 0.927
42 H 0.095 0.905
43 H 0.082 0.918
44 H 0.075 0.925
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.690 -2.927 -13.266 24.751
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.519 5.519
2 C -0.116 4.116
3 Si 0.700 3.300
4 H -0.202 1.202
5 H -0.179 1.179
6 H -0.217 1.217
7 C -0.545 4.545
8 H 0.104 0.896
9 C -0.001 4.001
10 C -0.706 4.706
11 S 2.708 3.292
12 O -0.955 6.955
13 O -0.927 6.927
14 N -0.845 5.845
15 C -0.008 4.008
16 C -0.177 4.177
17 C -0.141 4.141
18 C -0.049 4.049
19 H 0.109 0.891
20 C -0.079 4.079
21 C -0.294 4.294
22 C -0.093 4.093
23 N -0.188 5.188
24 H 0.282 0.718
25 N -0.112 5.112
26 C 0.009 3.991
27 C -0.215 4.215
28 C -0.224 4.224
29 H 0.077 0.923
30 H 0.143 0.857
31 H 0.124 0.876
32 H 0.089 0.911
33 H 0.114 0.886
34 H 0.089 0.911
35 H 0.096 0.904
36 H 0.085 0.915
37 H 0.089 0.911
38 H 0.166 0.834
39 H 0.192 0.808
40 H 0.110 0.890
41 H 0.091 0.909
42 H 0.113 0.887
43 H 0.100 0.900
44 H 0.093 0.907
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 20.201 -3.214 -11.951 23.691
hybrid contribution 1.230 1.322 -0.548 1.887
sum 21.431 -1.892 -12.499 24.882
Atomic orbital electron populations
1.69901 1.06389 1.27273 1.48313 1.24949 0.94531 0.98954 0.93201
0.86929 0.80898 0.83469 0.78682 1.20214 1.17898 1.21700 1.20348
0.85723 0.95432 1.53004 0.89564 1.18866 0.94901 1.02590 0.83756
1.30333 1.07266 1.21012 1.12036 1.05144 0.73620 0.77077 0.73319
1.93503 1.80743 1.46738 1.74505 1.93577 1.34737 1.87135 1.77240
1.58211 1.25021 1.73046 1.28197 1.21514 0.97628 0.94674 0.86966
1.22052 0.94902 0.98357 1.02362 1.21469 0.96507 1.00478 0.95682
1.20005 0.86851 0.98347 0.99710 0.89139 1.22202 0.95551 0.98201
0.91990 1.21433 0.95412 1.11031 1.01500 1.22589 0.98189 1.00667
0.87858 1.46366 1.13735 1.47125 1.11556 0.71835 1.77369 0.93072
1.18622 1.22173 1.21261 0.79940 0.94621 1.03321 1.23032 1.01500
0.92979 1.03973 1.22980 1.01130 0.95073 1.03190 0.92320 0.85665
0.87626 0.91115 0.88605 0.91144 0.90404 0.91539 0.91128 0.83410
0.80778 0.89002 0.90895 0.88665 0.89998 0.90658 0.88988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.88 13.96 55.43 0.77 -26.11 16
2 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16
3 Si 0.87 21.12 24.90 -169.99 -4.23 16.88 16
4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
5 H -0.25 -5.67 5.70 56.52 0.32 -5.35 16
6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
7 C -0.51 -14.34 8.81 -34.44 -0.30 -14.64 16
8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16
9 C 0.00 0.04 0.77 -155.66 -0.12 -0.08 16
10 C -0.57 -11.48 5.63 37.16 0.21 -11.27 16
11 S 2.61 52.44 5.16 -107.50 -0.55 51.88 16
12 O -0.96 -21.02 16.73 -57.54 -0.96 -21.98 16
13 O -0.94 -22.31 16.40 -57.54 -0.94 -23.26 16
14 N -1.01 -15.07 3.21 -113.27 -0.36 -15.44 16
15 C 0.12 1.47 6.34 -3.48 -0.02 1.45 16
16 C -0.14 -1.36 6.10 -26.39 -0.16 -1.52 16
17 C -0.10 -0.94 4.73 -26.69 -0.13 -1.06 16
18 C -0.03 -0.30 2.80 -91.65 -0.26 -0.56 16
19 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16
20 C 0.09 0.99 6.13 -82.40 -0.51 0.49 16
21 C -0.26 -2.34 9.98 -40.01 -0.40 -2.73 16
22 C 0.05 0.38 11.99 -17.22 -0.21 0.17 16
23 N -0.48 -4.02 7.36 30.44 0.22 -3.80 16
24 H 0.44 2.25 8.96 -182.61 -1.64 0.62 16
25 N -0.29 -3.54 12.70 33.67 0.43 -3.12 16
26 C 0.14 1.77 5.58 -3.71 -0.02 1.75 16
27 C -0.18 -3.76 9.96 -26.69 -0.27 -4.03 16
28 C -0.18 -3.92 7.55 -26.69 -0.20 -4.12 16
29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
30 H 0.13 2.44 6.75 -51.92 -0.35 2.09 16
31 H 0.11 1.75 8.09 -51.92 -0.42 1.33 16
32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.10 1.32 7.09 -51.94 -0.37 0.95 16
34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.07 0.56 7.37 -51.93 -0.38 0.18 16
38 H 0.15 1.04 7.46 -52.48 -0.39 0.64 16
39 H 0.18 0.52 8.06 -52.49 -0.42 0.09 16
40 H 0.09 1.31 7.10 -51.93 -0.37 0.94 16
41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
42 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16
43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16
44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16
45 H 0.09 2.02 7.24 -51.93 -0.38 1.64 16
LS Contribution 369.93 15.07 5.57 5.57
Total: -1.00 -36.74 369.93 -10.69 -47.44
By element:
Atomic # 1 Polarization: 13.81 SS G_CDS: -8.16 Total: 5.65 kcal
Atomic # 6 Polarization: -31.25 SS G_CDS: -2.48 Total: -33.73 kcal
Atomic # 7 Polarization: -49.52 SS G_CDS: 1.06 Total: -48.46 kcal
Atomic # 8 Polarization: -43.34 SS G_CDS: -1.91 Total: -45.24 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -4.23 Total: 16.88 kcal
Atomic # 16 Polarization: 52.44 SS G_CDS: -0.55 Total: 51.88 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -36.74 -10.69 -47.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590743748.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.365 kcal
(2) G-P(sol) polarization free energy of solvation -36.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds