Wall clock time and date at job start Tue Mar 31 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48502 * 109.46908 * 85.85168 * 3 2 1 5 5 H 1.48502 * 109.46852 * 205.84509 * 3 2 1 6 6 H 1.48499 * 109.47548 * 325.84637 * 3 2 1 7 7 C 1.37872 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00367 * 3.14104 * 7 2 1 9 9 C 1.50703 * 119.99826 * 183.12805 * 7 2 1 10 10 C 1.52997 * 115.55348 * 271.74888 * 9 7 2 11 11 S 1.81400 * 109.47273 * 294.28261 * 10 9 7 12 12 O 1.42105 * 110.53905 * 297.68601 * 11 10 9 13 13 O 1.42100 * 110.54509 * 74.43621 * 11 10 9 14 14 N 1.65599 * 104.45044 * 186.06126 * 11 10 9 15 15 C 1.46926 * 120.62775 * 269.72127 * 14 11 10 16 16 C 1.53628 * 108.54152 * 126.37037 * 15 14 11 17 17 C 1.53037 * 109.24458 * 54.85450 * 16 15 14 18 18 C 1.53041 * 109.53597 * 298.50746 * 17 16 15 19 19 H 1.08998 * 109.52810 * 301.40333 * 18 17 16 20 20 C 1.50702 * 109.49708 * 181.31607 * 18 17 16 21 21 C 1.39871 * 125.90021 * 325.16682 * 20 18 17 22 22 C 1.35314 * 107.92084 * 179.97438 * 21 20 18 23 23 N 1.34950 * 107.74575 * 0.02562 * 22 21 20 24 24 H 0.97002 * 126.03738 * 179.97438 * 23 22 21 25 25 N 1.30841 * 125.89532 * 144.85240 * 20 18 17 26 26 C 1.46923 * 120.63029 * 89.99611 * 14 11 10 27 27 C 1.53004 * 117.49526 * 126.08091 * 9 7 2 28 28 C 1.53002 * 117.49485 * 57.42541 * 9 7 2 29 29 H 0.97003 * 119.99705 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47010 * 54.28016 * 10 9 7 31 31 H 1.09000 * 109.47154 * 174.27965 * 10 9 7 32 32 H 1.09003 * 109.58529 * 246.19878 * 15 14 11 33 33 H 1.08988 * 109.58903 * 6.62096 * 15 14 11 34 34 H 1.08996 * 109.63295 * 294.85798 * 16 15 14 35 35 H 1.08999 * 109.45393 * 174.73708 * 16 15 14 36 36 H 1.09001 * 109.45834 * 178.49069 * 17 16 15 37 37 H 1.08996 * 109.45190 * 58.52512 * 17 16 15 38 38 H 1.08004 * 126.03661 * 359.97438 * 21 20 18 39 39 H 1.07996 * 126.12519 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.59172 * 353.37812 * 26 14 11 41 41 H 1.09005 * 109.58671 * 113.80091 * 26 14 11 42 42 H 1.09002 * 117.49621 * 359.97438 * 27 9 7 43 43 H 1.08998 * 117.49689 * 145.02365 * 27 9 7 44 44 H 1.08994 * 117.49441 * 214.97400 * 28 9 7 45 45 H 1.08997 * 117.49696 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4089 2.0970 1.3964 5 1 3.5879 1.4164 -0.6104 6 1 1.4934 2.6258 -0.7860 7 6 2.0045 -1.1940 0.0005 8 1 1.4658 -2.1287 -0.0503 9 6 3.5099 -1.1950 0.0718 10 6 4.2343 -1.1163 -1.2736 11 16 3.9043 -2.6237 -2.2271 12 8 4.4105 -3.7644 -1.5474 13 8 2.5811 -2.6067 -2.7449 14 7 4.8686 -2.4850 -3.5662 15 6 4.3676 -1.8360 -4.7855 16 6 5.3519 -0.7276 -5.1887 17 6 6.7547 -1.3239 -5.3256 18 6 7.2008 -1.8971 -3.9785 19 1 7.1921 -1.1084 -3.2261 20 6 8.5949 -2.4551 -4.1062 21 6 9.1250 -3.0873 -5.2357 22 6 10.4000 -3.4423 -4.9542 23 7 10.6671 -3.0493 -3.6911 24 1 11.5063 -3.1726 -3.2204 25 7 9.5202 -2.4268 -3.1816 26 6 6.2394 -3.0138 -3.5597 27 6 4.1641 -2.0239 1.1790 28 6 4.1609 -0.4957 1.2668 29 1 -0.4850 0.8401 -0.0004 30 1 3.8761 -0.2494 -1.8289 31 1 5.3068 -1.0212 -1.1037 32 1 4.2930 -2.5714 -5.5866 33 1 3.3864 -1.4028 -4.5920 34 1 5.3602 0.0504 -4.4253 35 1 5.0445 -0.2983 -6.1422 36 1 7.4512 -0.5458 -5.6377 37 1 6.7400 -2.1186 -6.0714 38 1 8.6079 -3.2612 -6.1678 39 1 11.0817 -3.9493 -5.6209 40 1 6.4936 -3.3579 -2.5571 41 1 6.3144 -3.8434 -4.2628 42 1 3.5057 -2.5681 1.8560 43 1 5.1108 -2.5127 0.9490 44 1 5.1055 0.0202 1.0945 45 1 3.5005 -0.0346 2.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590743748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:20 Heat of formation + Delta-G solvation = 28.928977 kcal Electronic energy + Delta-G solvation = -28591.676154 eV Core-core repulsion = 24738.773694 eV Total energy + Delta-G solvation = -3852.902460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44782 -38.47587 -37.10008 -36.38898 -35.14685 -33.47328 -32.13866 -31.90236 -30.22082 -29.82255 -28.46064 -25.52737 -24.49898 -23.97570 -21.79412 -21.68900 -21.00981 -19.49029 -19.11155 -18.38870 -18.25102 -17.19505 -16.60801 -15.82836 -15.30990 -15.06559 -14.85692 -14.80790 -14.41281 -14.26270 -13.90708 -13.82977 -13.75959 -13.38378 -13.04022 -12.95184 -12.62752 -12.51162 -12.26781 -11.55403 -11.48958 -11.37382 -11.30532 -11.18238 -11.12191 -10.94446 -10.87331 -10.71327 -10.62145 -10.45956 -10.34528 -10.07757 -9.72915 -9.61153 -9.13041 -8.97651 -8.84143 -8.64666 -8.37984 -6.14431 -4.22115 0.92903 1.66671 2.54009 2.63761 3.24143 3.25275 3.34196 3.37906 4.28833 4.37406 4.49722 4.51756 4.69206 4.76362 4.84231 4.87531 4.93754 5.06666 5.15293 5.20695 5.27501 5.33231 5.47138 5.48272 5.50910 5.68102 5.71334 5.79975 5.82958 5.87705 5.97419 5.98210 6.01989 6.07377 6.22246 6.27633 6.30377 6.38524 6.46178 6.68239 6.80223 6.92038 7.02888 7.09214 7.46417 7.62224 8.39550 8.90609 9.46631 10.96997 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003785 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.682582 B = 7394.956168 C = 7701.017750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.088 3.912 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.255 1.255 6 H -0.290 1.290 7 C -0.508 4.508 8 H 0.086 0.914 9 C 0.002 3.998 10 C -0.575 4.575 11 S 2.612 3.388 12 O -0.964 6.964 13 O -0.937 6.937 14 N -1.009 6.009 15 C 0.118 3.882 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.027 4.027 19 H 0.090 0.910 20 C 0.088 3.912 21 C -0.264 4.264 22 C 0.054 3.946 23 N -0.480 5.480 24 H 0.438 0.562 25 N -0.289 5.289 26 C 0.135 3.865 27 C -0.178 4.178 28 C -0.185 4.185 29 H 0.267 0.733 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.175 0.825 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.690 -2.927 -13.266 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.179 1.179 6 H -0.217 1.217 7 C -0.545 4.545 8 H 0.104 0.896 9 C -0.001 4.001 10 C -0.706 4.706 11 S 2.708 3.292 12 O -0.955 6.955 13 O -0.927 6.927 14 N -0.845 5.845 15 C -0.008 4.008 16 C -0.177 4.177 17 C -0.141 4.141 18 C -0.049 4.049 19 H 0.109 0.891 20 C -0.079 4.079 21 C -0.294 4.294 22 C -0.093 4.093 23 N -0.188 5.188 24 H 0.282 0.718 25 N -0.112 5.112 26 C 0.009 3.991 27 C -0.215 4.215 28 C -0.224 4.224 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.166 0.834 39 H 0.192 0.808 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 20.201 -3.214 -11.951 23.691 hybrid contribution 1.230 1.322 -0.548 1.887 sum 21.431 -1.892 -12.499 24.882 Atomic orbital electron populations 1.69901 1.06389 1.27273 1.48313 1.24949 0.94531 0.98954 0.93201 0.86929 0.80898 0.83469 0.78682 1.20214 1.17898 1.21700 1.20348 0.85723 0.95432 1.53004 0.89564 1.18866 0.94901 1.02590 0.83756 1.30333 1.07266 1.21012 1.12036 1.05144 0.73620 0.77077 0.73319 1.93503 1.80743 1.46738 1.74505 1.93577 1.34737 1.87135 1.77240 1.58211 1.25021 1.73046 1.28197 1.21514 0.97628 0.94674 0.86966 1.22052 0.94902 0.98357 1.02362 1.21469 0.96507 1.00478 0.95682 1.20005 0.86851 0.98347 0.99710 0.89139 1.22202 0.95551 0.98201 0.91990 1.21433 0.95412 1.11031 1.01500 1.22589 0.98189 1.00667 0.87858 1.46366 1.13735 1.47125 1.11556 0.71835 1.77369 0.93072 1.18622 1.22173 1.21261 0.79940 0.94621 1.03321 1.23032 1.01500 0.92979 1.03973 1.22980 1.01130 0.95073 1.03190 0.92320 0.85665 0.87626 0.91115 0.88605 0.91144 0.90404 0.91539 0.91128 0.83410 0.80778 0.89002 0.90895 0.88665 0.89998 0.90658 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16 3 Si 0.87 21.12 24.90 -169.99 -4.23 16.88 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.25 -5.67 5.70 56.52 0.32 -5.35 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.51 -14.34 8.81 -34.44 -0.30 -14.64 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.00 0.04 0.77 -155.66 -0.12 -0.08 16 10 C -0.57 -11.48 5.63 37.16 0.21 -11.27 16 11 S 2.61 52.44 5.16 -107.50 -0.55 51.88 16 12 O -0.96 -21.02 16.73 -57.54 -0.96 -21.98 16 13 O -0.94 -22.31 16.40 -57.54 -0.94 -23.26 16 14 N -1.01 -15.07 3.21 -113.27 -0.36 -15.44 16 15 C 0.12 1.47 6.34 -3.48 -0.02 1.45 16 16 C -0.14 -1.36 6.10 -26.39 -0.16 -1.52 16 17 C -0.10 -0.94 4.73 -26.69 -0.13 -1.06 16 18 C -0.03 -0.30 2.80 -91.65 -0.26 -0.56 16 19 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 20 C 0.09 0.99 6.13 -82.40 -0.51 0.49 16 21 C -0.26 -2.34 9.98 -40.01 -0.40 -2.73 16 22 C 0.05 0.38 11.99 -17.22 -0.21 0.17 16 23 N -0.48 -4.02 7.36 30.44 0.22 -3.80 16 24 H 0.44 2.25 8.96 -182.61 -1.64 0.62 16 25 N -0.29 -3.54 12.70 33.67 0.43 -3.12 16 26 C 0.14 1.77 5.58 -3.71 -0.02 1.75 16 27 C -0.18 -3.76 9.96 -26.69 -0.27 -4.03 16 28 C -0.18 -3.92 7.55 -26.69 -0.20 -4.12 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.13 2.44 6.75 -51.92 -0.35 2.09 16 31 H 0.11 1.75 8.09 -51.92 -0.42 1.33 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.32 7.09 -51.94 -0.37 0.95 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 7.37 -51.93 -0.38 0.18 16 38 H 0.15 1.04 7.46 -52.48 -0.39 0.64 16 39 H 0.18 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.09 1.31 7.10 -51.93 -0.37 0.94 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 2.02 7.24 -51.93 -0.38 1.64 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -36.74 369.93 -10.69 -47.44 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.16 Total: 5.65 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -2.48 Total: -33.73 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 1.06 Total: -48.46 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.91 Total: -45.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.23 Total: 16.88 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.55 Total: 51.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.74 -10.69 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590743748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.365 kcal (2) G-P(sol) polarization free energy of solvation -36.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds