Wall clock time and date at job start Tue Mar 31 2020 22:41:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86800 * 119.99847 * 2 1
4 4 H 1.48502 * 109.46908 * 85.85168 * 3 2 1
5 5 H 1.48502 * 109.46852 * 205.84509 * 3 2 1
6 6 H 1.48499 * 109.47548 * 325.84637 * 3 2 1
7 7 C 1.37872 * 119.99781 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00367 * 3.14104 * 7 2 1
9 9 C 1.50703 * 119.99826 * 183.12805 * 7 2 1
10 10 C 1.52997 * 115.55348 * 271.74888 * 9 7 2
11 11 S 1.81400 * 109.47273 * 294.28261 * 10 9 7
12 12 O 1.42105 * 110.53905 * 297.68601 * 11 10 9
13 13 O 1.42100 * 110.54509 * 74.43621 * 11 10 9
14 14 N 1.65599 * 104.45044 * 186.06126 * 11 10 9
15 15 C 1.46926 * 120.62775 * 269.72127 * 14 11 10
16 16 C 1.53628 * 108.54152 * 126.37037 * 15 14 11
17 17 C 1.53037 * 109.24458 * 54.85450 * 16 15 14
18 18 C 1.53041 * 109.53597 * 298.50746 * 17 16 15
19 19 H 1.08998 * 109.52810 * 301.40333 * 18 17 16
20 20 C 1.50702 * 109.49708 * 181.31607 * 18 17 16
21 21 C 1.39871 * 125.90021 * 325.16682 * 20 18 17
22 22 C 1.35314 * 107.92084 * 179.97438 * 21 20 18
23 23 N 1.34950 * 107.74575 * 0.02562 * 22 21 20
24 24 H 0.97002 * 126.03738 * 179.97438 * 23 22 21
25 25 N 1.30841 * 125.89532 * 144.85240 * 20 18 17
26 26 C 1.46923 * 120.63029 * 89.99611 * 14 11 10
27 27 C 1.53004 * 117.49526 * 126.08091 * 9 7 2
28 28 C 1.53002 * 117.49485 * 57.42541 * 9 7 2
29 29 H 0.97003 * 119.99705 * 0.02562 * 1 2 3
30 30 H 1.09003 * 109.47010 * 54.28016 * 10 9 7
31 31 H 1.09000 * 109.47154 * 174.27965 * 10 9 7
32 32 H 1.09003 * 109.58529 * 246.19878 * 15 14 11
33 33 H 1.08988 * 109.58903 * 6.62096 * 15 14 11
34 34 H 1.08996 * 109.63295 * 294.85798 * 16 15 14
35 35 H 1.08999 * 109.45393 * 174.73708 * 16 15 14
36 36 H 1.09001 * 109.45834 * 178.49069 * 17 16 15
37 37 H 1.08996 * 109.45190 * 58.52512 * 17 16 15
38 38 H 1.08004 * 126.03661 * 359.97438 * 21 20 18
39 39 H 1.07996 * 126.12519 * 180.02562 * 22 21 20
40 40 H 1.09001 * 109.59172 * 353.37812 * 26 14 11
41 41 H 1.09005 * 109.58671 * 113.80091 * 26 14 11
42 42 H 1.09002 * 117.49621 * 359.97438 * 27 9 7
43 43 H 1.08998 * 117.49689 * 145.02365 * 27 9 7
44 44 H 1.08994 * 117.49441 * 214.97400 * 28 9 7
45 45 H 1.08997 * 117.49696 * 359.97438 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4089 2.0970 1.3964
5 1 3.5879 1.4164 -0.6104
6 1 1.4934 2.6258 -0.7860
7 6 2.0045 -1.1940 0.0005
8 1 1.4658 -2.1287 -0.0503
9 6 3.5099 -1.1950 0.0718
10 6 4.2343 -1.1163 -1.2736
11 16 3.9043 -2.6237 -2.2271
12 8 4.4105 -3.7644 -1.5474
13 8 2.5811 -2.6067 -2.7449
14 7 4.8686 -2.4850 -3.5662
15 6 4.3676 -1.8360 -4.7855
16 6 5.3519 -0.7276 -5.1887
17 6 6.7547 -1.3239 -5.3256
18 6 7.2008 -1.8971 -3.9785
19 1 7.1921 -1.1084 -3.2261
20 6 8.5949 -2.4551 -4.1062
21 6 9.1250 -3.0873 -5.2357
22 6 10.4000 -3.4423 -4.9542
23 7 10.6671 -3.0493 -3.6911
24 1 11.5063 -3.1726 -3.2204
25 7 9.5202 -2.4268 -3.1816
26 6 6.2394 -3.0138 -3.5597
27 6 4.1641 -2.0239 1.1790
28 6 4.1609 -0.4957 1.2668
29 1 -0.4850 0.8401 -0.0004
30 1 3.8761 -0.2494 -1.8289
31 1 5.3068 -1.0212 -1.1037
32 1 4.2930 -2.5714 -5.5866
33 1 3.3864 -1.4028 -4.5920
34 1 5.3602 0.0504 -4.4253
35 1 5.0445 -0.2983 -6.1422
36 1 7.4512 -0.5458 -5.6377
37 1 6.7400 -2.1186 -6.0714
38 1 8.6079 -3.2612 -6.1678
39 1 11.0817 -3.9493 -5.6209
40 1 6.4936 -3.3579 -2.5571
41 1 6.3144 -3.8434 -4.2628
42 1 3.5057 -2.5681 1.8560
43 1 5.1108 -2.5127 0.9490
44 1 5.1055 0.0202 1.0945
45 1 3.5005 -0.0346 2.0011
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000590743748.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:41:19
Heat of formation + Delta-G solvation = 0.902096 kcal
Electronic energy + Delta-G solvation = -28592.891491 eV
Core-core repulsion = 24738.773694 eV
Total energy + Delta-G solvation = -3854.117797 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.09414 -39.40700 -38.87724 -38.07723 -36.84363 -34.36549 -34.30219 -32.78175
-30.90166 -30.55736 -30.10672 -27.63776 -25.48207 -24.86270 -23.39439 -22.43720
-21.92266 -21.10930 -20.06959 -19.72168 -18.95114 -18.64698 -18.46760 -17.23858
-16.99818 -16.71651 -15.89911 -15.67050 -15.54337 -15.41851 -15.18197 -14.85016
-14.71295 -14.59703 -14.56650 -14.27879 -13.93551 -13.78470 -13.41420 -13.22254
-12.99841 -12.85678 -12.82191 -12.72198 -12.42095 -12.30063 -12.08954 -11.98436
-11.76912 -11.73542 -11.68724 -11.53613 -11.25785 -11.00551 -10.73489 -10.50598
-10.25341 -9.79786 -9.56071 -8.32707 -6.46512 -0.62359 1.05225 1.35049
1.36508 1.50753 1.78712 1.95410 2.13105 2.35138 2.90364 2.98838
3.13507 3.28413 3.53203 3.72368 3.84927 3.91066 4.08925 4.11734
4.18248 4.27297 4.30885 4.34255 4.38642 4.47010 4.59451 4.62580
4.66538 4.81572 4.86322 4.91033 4.92933 4.99403 5.03198 5.07806
5.18197 5.24214 5.27277 5.33283 5.41133 5.52963 5.60182 5.66004
5.79305 6.18744 6.56047 6.64530 6.81152 7.26232 8.83582
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.016288 B = 0.003785 C = 0.003635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1718.682582 B = 7394.956168 C = 7701.017750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C 0.027 3.973
3 Si 0.933 3.067
4 H -0.265 1.265
5 H -0.217 1.217
6 H -0.291 1.291
7 C -0.513 4.513
8 H 0.028 0.972
9 C -0.031 4.031
10 C -0.571 4.571
11 S 2.615 3.385
12 O -0.991 6.991
13 O -0.988 6.988
14 N -0.999 5.999
15 C 0.107 3.893
16 C -0.132 4.132
17 C -0.096 4.096
18 C -0.022 4.022
19 H 0.080 0.920
20 C 0.074 3.926
21 C -0.283 4.283
22 C 0.070 3.930
23 N -0.476 5.476
24 H 0.450 0.550
25 N -0.338 5.338
26 C 0.133 3.867
27 C -0.176 4.176
28 C -0.168 4.168
29 H 0.269 0.731
30 H 0.132 0.868
31 H 0.147 0.853
32 H 0.090 0.910
33 H 0.076 0.924
34 H 0.065 0.935
35 H 0.103 0.897
36 H 0.079 0.921
37 H 0.086 0.914
38 H 0.165 0.835
39 H 0.218 0.782
40 H 0.075 0.925
41 H 0.087 0.913
42 H 0.081 0.919
43 H 0.108 0.892
44 H 0.115 0.885
45 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.107 -1.574 -15.161 29.371
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.172 4.172
3 Si 0.756 3.244
4 H -0.190 1.190
5 H -0.139 1.139
6 H -0.217 1.217
7 C -0.551 4.551
8 H 0.046 0.954
9 C -0.033 4.033
10 C -0.703 4.703
11 S 2.713 3.287
12 O -0.981 6.981
13 O -0.978 6.978
14 N -0.837 5.837
15 C -0.018 4.018
16 C -0.171 4.171
17 C -0.134 4.134
18 C -0.044 4.044
19 H 0.099 0.901
20 C -0.092 4.092
21 C -0.312 4.312
22 C -0.078 4.078
23 N -0.186 5.186
24 H 0.295 0.705
25 N -0.162 5.162
26 C 0.007 3.993
27 C -0.213 4.213
28 C -0.206 4.206
29 H 0.078 0.922
30 H 0.150 0.850
31 H 0.165 0.835
32 H 0.108 0.892
33 H 0.095 0.905
34 H 0.084 0.916
35 H 0.122 0.878
36 H 0.098 0.902
37 H 0.105 0.895
38 H 0.183 0.817
39 H 0.234 0.766
40 H 0.094 0.906
41 H 0.105 0.895
42 H 0.100 0.900
43 H 0.126 0.874
44 H 0.133 0.867
45 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 24.640 -1.891 -13.836 28.322
hybrid contribution -0.117 0.722 0.018 0.732
sum 24.523 -1.168 -13.818 28.172
Atomic orbital electron populations
1.70066 1.08677 1.28494 1.50616 1.25933 0.95294 1.03313 0.92630
0.85963 0.81126 0.77806 0.79554 1.18989 1.13865 1.21742 1.20433
0.88789 0.93327 1.52515 0.95370 1.18789 0.92429 1.05862 0.86238
1.30200 1.09358 1.20820 1.09895 1.04651 0.73044 0.77047 0.73957
1.93455 1.80894 1.48125 1.75641 1.93513 1.38183 1.87805 1.78342
1.57766 1.25374 1.73370 1.27220 1.21814 0.97681 0.96110 0.86168
1.22056 0.94593 0.97062 1.03430 1.21455 0.95906 1.01239 0.94793
1.19921 0.86710 0.97152 1.00654 0.90119 1.22260 0.95293 0.98827
0.92859 1.21740 0.96311 1.11457 1.01652 1.23277 0.98243 0.98875
0.87364 1.46426 1.13470 1.46443 1.12224 0.70456 1.77271 0.94586
1.20686 1.23698 1.21421 0.78951 0.95987 1.02957 1.23096 1.02011
0.93699 1.02470 1.23081 1.02007 0.94896 1.00658 0.92170 0.85011
0.83496 0.89179 0.90510 0.91624 0.87818 0.90212 0.89500 0.81698
0.76554 0.90636 0.89503 0.90013 0.87401 0.86696 0.89982
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16
2 C 0.03 1.61 5.47 84.65 0.46 2.08 16
3 Si 0.93 42.86 24.90 68.60 1.71 44.57 16
4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16
5 H -0.22 -8.53 5.70 99.48 0.57 -7.96 16
6 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
7 C -0.51 -30.23 8.81 25.60 0.23 -30.00 16
8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16
9 C -0.03 -1.42 0.77 -52.93 -0.04 -1.46 16
10 C -0.57 -21.89 5.63 71.98 0.41 -21.49 16
11 S 2.61 106.63 5.16 -56.49 -0.29 106.34 16
12 O -0.99 -44.08 16.73 -127.65 -2.14 -46.22 16
13 O -0.99 -49.60 16.40 -127.65 -2.09 -51.69 16
14 N -1.00 -28.95 3.21 -512.28 -1.65 -30.60 16
15 C 0.11 2.53 6.34 86.51 0.55 3.07 16
16 C -0.13 -2.22 6.10 30.82 0.19 -2.03 16
17 C -0.10 -1.41 4.73 30.62 0.14 -1.26 16
18 C -0.02 -0.45 2.80 -11.46 -0.03 -0.48 16
19 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16
20 C 0.07 1.49 6.13 43.10 0.26 1.75 16
21 C -0.28 -4.02 9.98 21.99 0.22 -3.80 16
22 C 0.07 0.71 11.99 83.54 1.00 1.72 16
23 N -0.48 -6.70 7.36 -57.59 -0.42 -7.13 16
24 H 0.45 3.51 8.96 -213.33 -1.91 1.60 16
25 N -0.34 -7.64 12.70 -47.38 -0.60 -8.24 16
26 C 0.13 3.27 5.58 86.36 0.48 3.75 16
27 C -0.18 -7.27 9.96 30.62 0.30 -6.97 16
28 C -0.17 -6.65 7.55 30.62 0.23 -6.42 16
29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16
30 H 0.13 4.87 6.75 -2.39 -0.02 4.85 16
31 H 0.15 4.35 8.09 -2.39 -0.02 4.33 16
32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
33 H 0.08 2.13 7.09 -2.39 -0.02 2.11 16
34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
37 H 0.09 1.01 7.37 -2.39 -0.02 1.00 16
38 H 0.17 1.64 7.46 -2.91 -0.02 1.62 16
39 H 0.22 0.15 8.06 -2.91 -0.02 0.13 16
40 H 0.08 2.11 7.10 -2.39 -0.02 2.09 16
41 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16
42 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16
43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16
44 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16
45 H 0.08 3.42 7.24 -2.39 -0.02 3.40 16
Total: -1.00 -86.03 369.93 -1.83 -87.85
By element:
Atomic # 1 Polarization: 27.51 SS G_CDS: -1.05 Total: 26.46 kcal
Atomic # 6 Polarization: -65.94 SS G_CDS: 4.41 Total: -61.53 kcal
Atomic # 7 Polarization: -103.40 SS G_CDS: -2.37 Total: -105.78 kcal
Atomic # 8 Polarization: -93.68 SS G_CDS: -4.23 Total: -97.91 kcal
Atomic # 14 Polarization: 42.86 SS G_CDS: 1.71 Total: 44.57 kcal
Atomic # 16 Polarization: 106.63 SS G_CDS: -0.29 Total: 106.34 kcal
Total: -86.03 -1.83 -87.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590743748.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.756 kcal
(2) G-P(sol) polarization free energy of solvation -86.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds