Wall clock time and date at job start Tue Mar 31 2020 22:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48502 * 109.46908 * 85.85168 * 3 2 1 5 5 H 1.48502 * 109.46852 * 205.84509 * 3 2 1 6 6 H 1.48499 * 109.47548 * 325.84637 * 3 2 1 7 7 C 1.37872 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00367 * 3.14104 * 7 2 1 9 9 C 1.50703 * 119.99826 * 183.12805 * 7 2 1 10 10 C 1.52997 * 115.55348 * 271.74888 * 9 7 2 11 11 S 1.81400 * 109.47273 * 294.28261 * 10 9 7 12 12 O 1.42105 * 110.53905 * 297.68601 * 11 10 9 13 13 O 1.42100 * 110.54509 * 74.43621 * 11 10 9 14 14 N 1.65599 * 104.45044 * 186.06126 * 11 10 9 15 15 C 1.46926 * 120.62775 * 269.72127 * 14 11 10 16 16 C 1.53628 * 108.54152 * 126.37037 * 15 14 11 17 17 C 1.53037 * 109.24458 * 54.85450 * 16 15 14 18 18 C 1.53041 * 109.53597 * 298.50746 * 17 16 15 19 19 H 1.08998 * 109.52810 * 301.40333 * 18 17 16 20 20 C 1.50702 * 109.49708 * 181.31607 * 18 17 16 21 21 C 1.39871 * 125.90021 * 325.16682 * 20 18 17 22 22 C 1.35314 * 107.92084 * 179.97438 * 21 20 18 23 23 N 1.34950 * 107.74575 * 0.02562 * 22 21 20 24 24 H 0.97002 * 126.03738 * 179.97438 * 23 22 21 25 25 N 1.30841 * 125.89532 * 144.85240 * 20 18 17 26 26 C 1.46923 * 120.63029 * 89.99611 * 14 11 10 27 27 C 1.53004 * 117.49526 * 126.08091 * 9 7 2 28 28 C 1.53002 * 117.49485 * 57.42541 * 9 7 2 29 29 H 0.97003 * 119.99705 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47010 * 54.28016 * 10 9 7 31 31 H 1.09000 * 109.47154 * 174.27965 * 10 9 7 32 32 H 1.09003 * 109.58529 * 246.19878 * 15 14 11 33 33 H 1.08988 * 109.58903 * 6.62096 * 15 14 11 34 34 H 1.08996 * 109.63295 * 294.85798 * 16 15 14 35 35 H 1.08999 * 109.45393 * 174.73708 * 16 15 14 36 36 H 1.09001 * 109.45834 * 178.49069 * 17 16 15 37 37 H 1.08996 * 109.45190 * 58.52512 * 17 16 15 38 38 H 1.08004 * 126.03661 * 359.97438 * 21 20 18 39 39 H 1.07996 * 126.12519 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.59172 * 353.37812 * 26 14 11 41 41 H 1.09005 * 109.58671 * 113.80091 * 26 14 11 42 42 H 1.09002 * 117.49621 * 359.97438 * 27 9 7 43 43 H 1.08998 * 117.49689 * 145.02365 * 27 9 7 44 44 H 1.08994 * 117.49441 * 214.97400 * 28 9 7 45 45 H 1.08997 * 117.49696 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4089 2.0970 1.3964 5 1 3.5879 1.4164 -0.6104 6 1 1.4934 2.6258 -0.7860 7 6 2.0045 -1.1940 0.0005 8 1 1.4658 -2.1287 -0.0503 9 6 3.5099 -1.1950 0.0718 10 6 4.2343 -1.1163 -1.2736 11 16 3.9043 -2.6237 -2.2271 12 8 4.4105 -3.7644 -1.5474 13 8 2.5811 -2.6067 -2.7449 14 7 4.8686 -2.4850 -3.5662 15 6 4.3676 -1.8360 -4.7855 16 6 5.3519 -0.7276 -5.1887 17 6 6.7547 -1.3239 -5.3256 18 6 7.2008 -1.8971 -3.9785 19 1 7.1921 -1.1084 -3.2261 20 6 8.5949 -2.4551 -4.1062 21 6 9.1250 -3.0873 -5.2357 22 6 10.4000 -3.4423 -4.9542 23 7 10.6671 -3.0493 -3.6911 24 1 11.5063 -3.1726 -3.2204 25 7 9.5202 -2.4268 -3.1816 26 6 6.2394 -3.0138 -3.5597 27 6 4.1641 -2.0239 1.1790 28 6 4.1609 -0.4957 1.2668 29 1 -0.4850 0.8401 -0.0004 30 1 3.8761 -0.2494 -1.8289 31 1 5.3068 -1.0212 -1.1037 32 1 4.2930 -2.5714 -5.5866 33 1 3.3864 -1.4028 -4.5920 34 1 5.3602 0.0504 -4.4253 35 1 5.0445 -0.2983 -6.1422 36 1 7.4512 -0.5458 -5.6377 37 1 6.7400 -2.1186 -6.0714 38 1 8.6079 -3.2612 -6.1678 39 1 11.0817 -3.9493 -5.6209 40 1 6.4936 -3.3579 -2.5571 41 1 6.3144 -3.8434 -4.2628 42 1 3.5057 -2.5681 1.8560 43 1 5.1108 -2.5127 0.9490 44 1 5.1055 0.0202 1.0945 45 1 3.5005 -0.0346 2.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590743748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:19 Heat of formation + Delta-G solvation = 0.902096 kcal Electronic energy + Delta-G solvation = -28592.891491 eV Core-core repulsion = 24738.773694 eV Total energy + Delta-G solvation = -3854.117797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09414 -39.40700 -38.87724 -38.07723 -36.84363 -34.36549 -34.30219 -32.78175 -30.90166 -30.55736 -30.10672 -27.63776 -25.48207 -24.86270 -23.39439 -22.43720 -21.92266 -21.10930 -20.06959 -19.72168 -18.95114 -18.64698 -18.46760 -17.23858 -16.99818 -16.71651 -15.89911 -15.67050 -15.54337 -15.41851 -15.18197 -14.85016 -14.71295 -14.59703 -14.56650 -14.27879 -13.93551 -13.78470 -13.41420 -13.22254 -12.99841 -12.85678 -12.82191 -12.72198 -12.42095 -12.30063 -12.08954 -11.98436 -11.76912 -11.73542 -11.68724 -11.53613 -11.25785 -11.00551 -10.73489 -10.50598 -10.25341 -9.79786 -9.56071 -8.32707 -6.46512 -0.62359 1.05225 1.35049 1.36508 1.50753 1.78712 1.95410 2.13105 2.35138 2.90364 2.98838 3.13507 3.28413 3.53203 3.72368 3.84927 3.91066 4.08925 4.11734 4.18248 4.27297 4.30885 4.34255 4.38642 4.47010 4.59451 4.62580 4.66538 4.81572 4.86322 4.91033 4.92933 4.99403 5.03198 5.07806 5.18197 5.24214 5.27277 5.33283 5.41133 5.52963 5.60182 5.66004 5.79305 6.18744 6.56047 6.64530 6.81152 7.26232 8.83582 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003785 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.682582 B = 7394.956168 C = 7701.017750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.217 1.217 6 H -0.291 1.291 7 C -0.513 4.513 8 H 0.028 0.972 9 C -0.031 4.031 10 C -0.571 4.571 11 S 2.615 3.385 12 O -0.991 6.991 13 O -0.988 6.988 14 N -0.999 5.999 15 C 0.107 3.893 16 C -0.132 4.132 17 C -0.096 4.096 18 C -0.022 4.022 19 H 0.080 0.920 20 C 0.074 3.926 21 C -0.283 4.283 22 C 0.070 3.930 23 N -0.476 5.476 24 H 0.450 0.550 25 N -0.338 5.338 26 C 0.133 3.867 27 C -0.176 4.176 28 C -0.168 4.168 29 H 0.269 0.731 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.218 0.782 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.107 -1.574 -15.161 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.190 1.190 5 H -0.139 1.139 6 H -0.217 1.217 7 C -0.551 4.551 8 H 0.046 0.954 9 C -0.033 4.033 10 C -0.703 4.703 11 S 2.713 3.287 12 O -0.981 6.981 13 O -0.978 6.978 14 N -0.837 5.837 15 C -0.018 4.018 16 C -0.171 4.171 17 C -0.134 4.134 18 C -0.044 4.044 19 H 0.099 0.901 20 C -0.092 4.092 21 C -0.312 4.312 22 C -0.078 4.078 23 N -0.186 5.186 24 H 0.295 0.705 25 N -0.162 5.162 26 C 0.007 3.993 27 C -0.213 4.213 28 C -0.206 4.206 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.165 0.835 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.183 0.817 39 H 0.234 0.766 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.133 0.867 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 24.640 -1.891 -13.836 28.322 hybrid contribution -0.117 0.722 0.018 0.732 sum 24.523 -1.168 -13.818 28.172 Atomic orbital electron populations 1.70066 1.08677 1.28494 1.50616 1.25933 0.95294 1.03313 0.92630 0.85963 0.81126 0.77806 0.79554 1.18989 1.13865 1.21742 1.20433 0.88789 0.93327 1.52515 0.95370 1.18789 0.92429 1.05862 0.86238 1.30200 1.09358 1.20820 1.09895 1.04651 0.73044 0.77047 0.73957 1.93455 1.80894 1.48125 1.75641 1.93513 1.38183 1.87805 1.78342 1.57766 1.25374 1.73370 1.27220 1.21814 0.97681 0.96110 0.86168 1.22056 0.94593 0.97062 1.03430 1.21455 0.95906 1.01239 0.94793 1.19921 0.86710 0.97152 1.00654 0.90119 1.22260 0.95293 0.98827 0.92859 1.21740 0.96311 1.11457 1.01652 1.23277 0.98243 0.98875 0.87364 1.46426 1.13470 1.46443 1.12224 0.70456 1.77271 0.94586 1.20686 1.23698 1.21421 0.78951 0.95987 1.02957 1.23096 1.02011 0.93699 1.02470 1.23081 1.02007 0.94896 1.00658 0.92170 0.85011 0.83496 0.89179 0.90510 0.91624 0.87818 0.90212 0.89500 0.81698 0.76554 0.90636 0.89503 0.90013 0.87401 0.86696 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.03 1.61 5.47 84.65 0.46 2.08 16 3 Si 0.93 42.86 24.90 68.60 1.71 44.57 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.22 -8.53 5.70 99.48 0.57 -7.96 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.51 -30.23 8.81 25.60 0.23 -30.00 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 9 C -0.03 -1.42 0.77 -52.93 -0.04 -1.46 16 10 C -0.57 -21.89 5.63 71.98 0.41 -21.49 16 11 S 2.61 106.63 5.16 -56.49 -0.29 106.34 16 12 O -0.99 -44.08 16.73 -127.65 -2.14 -46.22 16 13 O -0.99 -49.60 16.40 -127.65 -2.09 -51.69 16 14 N -1.00 -28.95 3.21 -512.28 -1.65 -30.60 16 15 C 0.11 2.53 6.34 86.51 0.55 3.07 16 16 C -0.13 -2.22 6.10 30.82 0.19 -2.03 16 17 C -0.10 -1.41 4.73 30.62 0.14 -1.26 16 18 C -0.02 -0.45 2.80 -11.46 -0.03 -0.48 16 19 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 20 C 0.07 1.49 6.13 43.10 0.26 1.75 16 21 C -0.28 -4.02 9.98 21.99 0.22 -3.80 16 22 C 0.07 0.71 11.99 83.54 1.00 1.72 16 23 N -0.48 -6.70 7.36 -57.59 -0.42 -7.13 16 24 H 0.45 3.51 8.96 -213.33 -1.91 1.60 16 25 N -0.34 -7.64 12.70 -47.38 -0.60 -8.24 16 26 C 0.13 3.27 5.58 86.36 0.48 3.75 16 27 C -0.18 -7.27 9.96 30.62 0.30 -6.97 16 28 C -0.17 -6.65 7.55 30.62 0.23 -6.42 16 29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.13 4.87 6.75 -2.39 -0.02 4.85 16 31 H 0.15 4.35 8.09 -2.39 -0.02 4.33 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.13 7.09 -2.39 -0.02 2.11 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.01 7.37 -2.39 -0.02 1.00 16 38 H 0.17 1.64 7.46 -2.91 -0.02 1.62 16 39 H 0.22 0.15 8.06 -2.91 -0.02 0.13 16 40 H 0.08 2.11 7.10 -2.39 -0.02 2.09 16 41 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 45 H 0.08 3.42 7.24 -2.39 -0.02 3.40 16 Total: -1.00 -86.03 369.93 -1.83 -87.85 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -1.05 Total: 26.46 kcal Atomic # 6 Polarization: -65.94 SS G_CDS: 4.41 Total: -61.53 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -2.37 Total: -105.78 kcal Atomic # 8 Polarization: -93.68 SS G_CDS: -4.23 Total: -97.91 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.71 Total: 44.57 kcal Atomic # 16 Polarization: 106.63 SS G_CDS: -0.29 Total: 106.34 kcal Total: -86.03 -1.83 -87.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590743748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.756 kcal (2) G-P(sol) polarization free energy of solvation -86.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds