Wall clock time and date at job start Tue Mar 31 2020 22:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48498 * 109.47465 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46746 * 120.00062 * 3 2 1 6 6 H 1.48497 * 109.47066 * 239.99880 * 3 2 1 7 7 C 1.37872 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99943 * 185.79212 * 7 2 1 9 9 C 1.50701 * 120.00032 * 5.78572 * 7 2 1 10 10 C 1.53003 * 115.55065 * 279.53728 * 9 7 2 11 11 S 1.81403 * 109.47276 * 294.73527 * 10 9 7 12 12 O 1.42100 * 110.54148 * 297.75340 * 11 10 9 13 13 O 1.42101 * 110.54364 * 74.50043 * 11 10 9 14 14 N 1.65599 * 104.44947 * 186.12858 * 11 10 9 15 15 C 1.46922 * 120.63209 * 89.99556 * 14 11 10 16 16 C 1.53187 * 108.77838 * 233.58476 * 15 14 11 17 17 C 1.53037 * 109.31675 * 305.36926 * 16 15 14 18 18 C 1.53042 * 109.53623 * 61.36089 * 17 16 15 19 19 H 1.08996 * 109.49422 * 58.59005 * 18 17 16 20 20 N 1.46498 * 109.49516 * 178.65328 * 18 17 16 21 21 C 1.36881 * 126.39790 * 239.71386 * 20 18 17 22 22 C 1.34673 * 106.81524 * 179.84148 * 21 20 18 23 23 N 1.34125 * 108.02294 * 0.42673 * 22 21 20 24 24 C 1.30497 * 109.25621 * 359.72509 * 23 22 21 25 25 C 1.46925 * 120.62893 * 269.71954 * 14 11 10 26 26 C 1.52998 * 117.49440 * 133.83420 * 9 7 2 27 27 C 1.52994 * 117.49605 * 65.20986 * 9 7 2 28 28 H 0.97000 * 120.00283 * 174.98256 * 1 2 3 29 29 H 1.08999 * 109.46742 * 54.73517 * 10 9 7 30 30 H 1.08994 * 109.47079 * 174.73541 * 10 9 7 31 31 H 1.09003 * 109.58944 * 353.38041 * 15 14 11 32 32 H 1.09005 * 109.58514 * 113.65639 * 15 14 11 33 33 H 1.09000 * 109.49644 * 65.32133 * 16 15 14 34 34 H 1.09004 * 109.49814 * 185.38133 * 16 15 14 35 35 H 1.08996 * 109.46456 * 181.38640 * 17 16 15 36 36 H 1.08999 * 109.45559 * 301.34462 * 17 16 15 37 37 H 1.07994 * 126.59362 * 359.97438 * 21 20 18 38 38 H 1.08004 * 125.98432 * 180.18675 * 22 21 20 39 39 H 1.08000 * 125.64946 * 179.97438 * 24 23 22 40 40 H 1.08991 * 109.58561 * 246.20164 * 25 14 11 41 41 H 1.09001 * 109.58703 * 6.62731 * 25 14 11 42 42 H 1.09001 * 117.50541 * 359.97438 * 26 9 7 43 43 H 1.09002 * 117.49941 * 145.02726 * 26 9 7 44 44 H 1.09002 * 117.49567 * 214.97466 * 27 9 7 45 45 H 1.09002 * 117.50147 * 0.02562 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0803 -1.1965 0.0939 9 6 1.2567 -2.4957 -0.1327 10 6 0.6129 -3.0203 1.1523 11 16 1.9088 -3.4408 2.3500 12 8 2.7376 -4.4783 1.8441 13 8 2.4705 -2.2624 2.9113 14 7 1.0953 -4.1452 3.6088 15 6 0.8641 -5.5959 3.6324 16 6 -0.6336 -5.8534 3.8256 17 6 -1.1159 -5.1195 5.0790 18 6 -0.9032 -3.6141 4.9042 19 1 -1.4477 -3.2694 4.0252 20 7 -1.3946 -2.9099 6.0912 21 6 -2.3789 -1.9592 6.1221 22 6 -2.5154 -1.5813 7.4075 23 7 -1.6319 -2.2754 8.1401 24 6 -0.9571 -3.0732 7.3584 25 6 0.5964 -3.3320 4.7261 26 6 1.8037 -3.5273 -1.1214 27 6 0.5223 -2.7580 -1.4489 28 1 -0.4850 -0.8368 -0.0735 29 1 -0.0357 -2.2521 1.5735 30 1 0.0241 -3.9094 0.9269 31 1 1.1915 -6.0336 2.6894 32 1 1.4227 -6.0416 4.4555 33 1 -1.1807 -5.4876 2.9567 34 1 -0.8069 -6.9234 3.9406 35 1 -2.1760 -5.3211 5.2325 36 1 -0.5512 -5.4681 5.9437 37 1 -2.9399 -1.5856 5.2782 38 1 -3.2114 -0.8453 7.7821 39 1 -0.1776 -3.7514 7.6726 40 1 1.1316 -3.5964 5.6380 41 1 0.7470 -2.2753 4.5049 42 1 2.7040 -3.2643 -1.6767 43 1 1.7048 -4.5800 -0.8566 44 1 -0.4195 -3.3046 -1.3995 45 1 0.5802 -1.9892 -2.2195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590746443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:33 Heat of formation + Delta-G solvation = 14.013408 kcal Electronic energy + Delta-G solvation = -28830.529218 eV Core-core repulsion = 24976.979971 eV Total energy + Delta-G solvation = -3853.549248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18065 -38.73266 -37.19058 -36.58726 -35.34134 -34.14702 -32.28660 -32.09946 -30.06067 -29.06581 -28.43528 -25.14052 -24.77174 -23.96471 -21.90406 -21.51226 -21.23636 -20.30028 -19.67966 -18.64010 -17.72630 -17.12336 -16.91445 -16.06926 -15.62731 -15.32069 -14.99037 -14.63400 -14.33886 -14.21571 -13.92987 -13.79571 -13.74825 -13.70183 -13.55352 -13.31710 -12.91002 -12.66987 -12.05395 -11.97836 -11.80735 -11.57664 -11.48149 -11.43684 -11.28572 -11.11436 -10.93869 -10.83843 -10.75063 -10.48050 -10.14319 -10.03081 -9.89858 -9.70329 -9.11314 -8.76022 -8.61995 -8.56222 -8.39075 -6.54069 -4.33684 0.72882 2.00540 2.54347 3.10223 3.14697 3.39795 3.44077 3.60531 4.15062 4.24271 4.39485 4.42721 4.47299 4.52406 4.64364 4.75882 4.76606 4.86702 4.87716 4.95181 5.11470 5.12480 5.30049 5.35919 5.43436 5.47869 5.48168 5.53985 5.59885 5.64769 5.67915 5.86355 5.89108 5.97745 6.05754 6.22627 6.23721 6.43521 6.47755 6.65392 6.68996 6.90895 7.07158 7.11009 7.93734 8.02317 8.24886 8.67568 9.44992 10.85168 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.004518 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.401888 B = 6195.315746 C = 7514.983611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 1.061 2.939 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.589 4.589 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.566 4.566 11 S 2.611 3.389 12 O -0.964 6.964 13 O -0.939 6.939 14 N -1.008 6.008 15 C 0.116 3.884 16 C -0.133 4.133 17 C -0.122 4.122 18 C 0.117 3.883 19 H 0.107 0.893 20 N -0.451 5.451 21 C -0.050 4.050 22 C -0.033 4.033 23 N -0.497 5.497 24 C 0.180 3.820 25 C 0.117 3.883 26 C -0.191 4.191 27 C -0.165 4.165 28 H 0.273 0.727 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.200 0.800 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -11.388 8.769 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.167 4.167 3 Si 0.888 3.112 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.626 4.626 8 H 0.080 0.920 9 C 0.019 3.981 10 C -0.698 4.698 11 S 2.708 3.292 12 O -0.954 6.954 13 O -0.929 6.929 14 N -0.843 5.843 15 C -0.010 4.010 16 C -0.173 4.173 17 C -0.161 4.161 18 C 0.012 3.988 19 H 0.125 0.875 20 N -0.134 5.134 21 C -0.184 4.184 22 C -0.181 4.181 23 N -0.215 5.215 24 C -0.102 4.102 25 C -0.010 4.010 26 C -0.228 4.228 27 C -0.204 4.204 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.217 0.783 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.499 -9.619 9.569 14.295 hybrid contribution -0.810 -1.750 -1.219 2.281 sum -5.309 -11.369 8.351 15.072 Atomic orbital electron populations 1.70789 1.06841 1.31448 1.43982 1.25812 0.96348 1.02479 0.92059 0.83662 0.75297 0.75072 0.77207 1.20555 1.20647 1.21060 1.21387 0.94570 0.89465 1.57206 0.92003 1.18560 0.99234 0.95805 0.84544 1.30159 1.16490 1.08389 1.14801 1.05225 0.76280 0.73632 0.74052 1.93502 1.64021 1.57492 1.80402 1.93559 1.74872 1.48696 1.75785 1.58268 1.75244 1.14689 1.36094 1.21447 0.95493 0.80038 1.03986 1.21950 0.96448 1.01014 0.97862 1.21836 1.02411 0.92406 0.99410 1.22048 0.96646 0.93211 0.86887 0.87467 1.45605 1.28677 1.30703 1.08392 1.22844 0.97404 0.97288 1.00815 1.22279 1.02108 1.03682 0.90011 1.70289 1.08745 1.09126 1.33354 1.24862 1.02658 1.02896 0.79782 1.21678 0.91106 0.97082 0.91148 1.23040 0.98100 0.95693 1.05981 1.22820 0.93765 1.02395 1.01446 0.91537 0.85614 0.88151 0.88639 0.90907 0.90894 0.89755 0.90794 0.90682 0.80852 0.81439 0.78306 0.90372 0.87881 0.89198 0.90453 0.91217 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.92 13.61 55.43 0.75 -24.17 16 2 C 0.04 1.09 5.42 -17.82 -0.10 0.99 16 3 Si 1.06 24.74 29.91 -169.99 -5.08 19.66 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.59 -15.81 8.17 -34.44 -0.28 -16.09 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.02 0.49 0.85 -155.66 -0.13 0.35 16 10 C -0.57 -10.96 5.89 37.16 0.22 -10.74 16 11 S 2.61 49.76 5.15 -107.50 -0.55 49.20 16 12 O -0.96 -19.83 16.72 -57.54 -0.96 -20.79 16 13 O -0.94 -21.65 16.38 -57.54 -0.94 -22.60 16 14 N -1.01 -13.66 3.21 -113.28 -0.36 -14.03 16 15 C 0.12 1.19 6.31 -3.72 -0.02 1.17 16 16 C -0.13 -1.03 6.08 -26.62 -0.16 -1.19 16 17 C -0.12 -0.97 5.20 -26.69 -0.14 -1.11 16 18 C 0.12 1.19 3.02 -67.59 -0.20 0.99 16 19 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 20 N -0.45 -5.04 2.62 -111.09 -0.29 -5.33 16 21 C -0.05 -0.58 11.54 -16.56 -0.19 -0.77 16 22 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 23 N -0.50 -6.88 11.25 -14.66 -0.16 -7.05 16 24 C 0.18 2.09 11.49 -90.37 -1.04 1.05 16 25 C 0.12 1.45 5.73 -3.49 -0.02 1.43 16 26 C -0.19 -3.97 9.96 -26.73 -0.27 -4.24 16 27 C -0.17 -3.51 9.00 -26.73 -0.24 -3.75 16 28 H 0.27 7.35 6.07 -40.82 -0.25 7.11 16 29 H 0.13 2.53 7.60 -51.92 -0.39 2.13 16 30 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 31 H 0.10 1.02 7.10 -51.93 -0.37 0.65 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.53 7.99 -51.93 -0.41 0.12 16 37 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 41 H 0.10 1.52 7.09 -51.93 -0.37 1.16 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -34.36 377.68 -11.60 -45.96 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.90 Total: 5.97 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -2.79 Total: -32.52 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.07 Total: -50.57 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.90 Total: -43.38 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.55 Total: 49.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.36 -11.60 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.970 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds