Wall clock time and date at job start Tue Mar 31 2020 22:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48498 * 109.47465 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46746 * 120.00062 * 3 2 1 6 6 H 1.48497 * 109.47066 * 239.99880 * 3 2 1 7 7 C 1.37872 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99943 * 185.79212 * 7 2 1 9 9 C 1.50701 * 120.00032 * 5.78572 * 7 2 1 10 10 C 1.53003 * 115.55065 * 279.53728 * 9 7 2 11 11 S 1.81403 * 109.47276 * 294.73527 * 10 9 7 12 12 O 1.42100 * 110.54148 * 297.75340 * 11 10 9 13 13 O 1.42101 * 110.54364 * 74.50043 * 11 10 9 14 14 N 1.65599 * 104.44947 * 186.12858 * 11 10 9 15 15 C 1.46922 * 120.63209 * 89.99556 * 14 11 10 16 16 C 1.53187 * 108.77838 * 233.58476 * 15 14 11 17 17 C 1.53037 * 109.31675 * 305.36926 * 16 15 14 18 18 C 1.53042 * 109.53623 * 61.36089 * 17 16 15 19 19 H 1.08996 * 109.49422 * 58.59005 * 18 17 16 20 20 N 1.46498 * 109.49516 * 178.65328 * 18 17 16 21 21 C 1.36881 * 126.39790 * 239.71386 * 20 18 17 22 22 C 1.34673 * 106.81524 * 179.84148 * 21 20 18 23 23 N 1.34125 * 108.02294 * 0.42673 * 22 21 20 24 24 C 1.30497 * 109.25621 * 359.72509 * 23 22 21 25 25 C 1.46925 * 120.62893 * 269.71954 * 14 11 10 26 26 C 1.52998 * 117.49440 * 133.83420 * 9 7 2 27 27 C 1.52994 * 117.49605 * 65.20986 * 9 7 2 28 28 H 0.97000 * 120.00283 * 174.98256 * 1 2 3 29 29 H 1.08999 * 109.46742 * 54.73517 * 10 9 7 30 30 H 1.08994 * 109.47079 * 174.73541 * 10 9 7 31 31 H 1.09003 * 109.58944 * 353.38041 * 15 14 11 32 32 H 1.09005 * 109.58514 * 113.65639 * 15 14 11 33 33 H 1.09000 * 109.49644 * 65.32133 * 16 15 14 34 34 H 1.09004 * 109.49814 * 185.38133 * 16 15 14 35 35 H 1.08996 * 109.46456 * 181.38640 * 17 16 15 36 36 H 1.08999 * 109.45559 * 301.34462 * 17 16 15 37 37 H 1.07994 * 126.59362 * 359.97438 * 21 20 18 38 38 H 1.08004 * 125.98432 * 180.18675 * 22 21 20 39 39 H 1.08000 * 125.64946 * 179.97438 * 24 23 22 40 40 H 1.08991 * 109.58561 * 246.20164 * 25 14 11 41 41 H 1.09001 * 109.58703 * 6.62731 * 25 14 11 42 42 H 1.09001 * 117.50541 * 359.97438 * 26 9 7 43 43 H 1.09002 * 117.49941 * 145.02726 * 26 9 7 44 44 H 1.09002 * 117.49567 * 214.97466 * 27 9 7 45 45 H 1.09002 * 117.50147 * 0.02562 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0803 -1.1965 0.0939 9 6 1.2567 -2.4957 -0.1327 10 6 0.6129 -3.0203 1.1523 11 16 1.9088 -3.4408 2.3500 12 8 2.7376 -4.4783 1.8441 13 8 2.4705 -2.2624 2.9113 14 7 1.0953 -4.1452 3.6088 15 6 0.8641 -5.5959 3.6324 16 6 -0.6336 -5.8534 3.8256 17 6 -1.1159 -5.1195 5.0790 18 6 -0.9032 -3.6141 4.9042 19 1 -1.4477 -3.2694 4.0252 20 7 -1.3946 -2.9099 6.0912 21 6 -2.3789 -1.9592 6.1221 22 6 -2.5154 -1.5813 7.4075 23 7 -1.6319 -2.2754 8.1401 24 6 -0.9571 -3.0732 7.3584 25 6 0.5964 -3.3320 4.7261 26 6 1.8037 -3.5273 -1.1214 27 6 0.5223 -2.7580 -1.4489 28 1 -0.4850 -0.8368 -0.0735 29 1 -0.0357 -2.2521 1.5735 30 1 0.0241 -3.9094 0.9269 31 1 1.1915 -6.0336 2.6894 32 1 1.4227 -6.0416 4.4555 33 1 -1.1807 -5.4876 2.9567 34 1 -0.8069 -6.9234 3.9406 35 1 -2.1760 -5.3211 5.2325 36 1 -0.5512 -5.4681 5.9437 37 1 -2.9399 -1.5856 5.2782 38 1 -3.2114 -0.8453 7.7821 39 1 -0.1776 -3.7514 7.6726 40 1 1.1316 -3.5964 5.6380 41 1 0.7470 -2.2753 4.5049 42 1 2.7040 -3.2643 -1.6767 43 1 1.7048 -4.5800 -0.8566 44 1 -0.4195 -3.3046 -1.3995 45 1 0.5802 -1.9892 -2.2195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590746443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:32 Heat of formation + Delta-G solvation = -7.219146 kcal Electronic energy + Delta-G solvation = -28831.449931 eV Core-core repulsion = 24976.979971 eV Total energy + Delta-G solvation = -3854.469960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.05309 -39.60259 -38.92759 -38.17890 -36.94676 -35.07419 -34.10613 -33.09551 -30.94447 -30.01245 -29.93771 -27.10647 -25.71829 -24.81006 -23.18509 -22.75010 -22.14128 -21.74756 -20.91720 -19.82294 -18.95897 -18.81329 -18.10231 -17.27228 -17.18281 -16.28504 -15.97103 -15.79761 -15.68814 -15.66636 -15.19328 -14.97768 -14.85319 -14.75198 -14.58357 -14.51896 -14.36311 -13.80570 -13.67173 -13.17480 -13.16366 -13.04470 -12.94793 -12.71669 -12.70881 -12.43963 -12.22855 -12.08856 -12.02959 -11.96991 -11.76973 -11.50416 -10.95822 -10.72762 -10.63648 -10.59297 -10.30825 -9.94582 -9.45145 -8.64209 -6.42670 -0.73533 1.12791 1.49398 1.55293 1.57222 1.74437 1.96733 2.23077 2.50091 2.83758 3.07572 3.13178 3.22343 3.38692 3.41858 3.70242 3.80436 3.84986 3.91273 3.98821 4.04624 4.09663 4.18812 4.30733 4.35982 4.39890 4.52460 4.57894 4.60606 4.62849 4.74545 4.79715 4.83260 4.89239 4.98137 5.01103 5.05620 5.21556 5.24690 5.37901 5.39190 5.50511 5.81706 5.98703 6.12716 6.26937 6.61930 7.13326 7.38856 8.77359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.004518 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.401888 B = 6195.315746 C = 7514.983611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 1.088 2.912 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.602 4.602 8 H 0.038 0.962 9 C -0.015 4.015 10 C -0.561 4.561 11 S 2.622 3.378 12 O -0.983 6.983 13 O -0.991 6.991 14 N -0.996 5.996 15 C 0.104 3.896 16 C -0.126 4.126 17 C -0.116 4.116 18 C 0.122 3.878 19 H 0.106 0.894 20 N -0.451 5.451 21 C -0.058 4.058 22 C -0.051 4.051 23 N -0.533 5.533 24 C 0.180 3.820 25 C 0.113 3.887 26 C -0.181 4.181 27 C -0.157 4.157 28 H 0.272 0.728 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.190 0.810 38 H 0.181 0.819 39 H 0.228 0.772 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -13.777 9.194 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.203 4.203 3 Si 0.911 3.089 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.640 4.640 8 H 0.056 0.944 9 C -0.017 4.017 10 C -0.693 4.693 11 S 2.720 3.280 12 O -0.973 6.973 13 O -0.981 6.981 14 N -0.835 5.835 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.154 4.154 18 C 0.017 3.983 19 H 0.124 0.876 20 N -0.133 5.133 21 C -0.191 4.191 22 C -0.198 4.198 23 N -0.252 5.252 24 C -0.103 4.103 25 C -0.013 4.013 26 C -0.218 4.218 27 C -0.196 4.196 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.207 0.793 38 H 0.198 0.802 39 H 0.244 0.756 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.581 -12.020 9.968 16.583 hybrid contribution -0.441 -1.074 -1.315 1.754 sum -6.022 -13.093 8.653 16.810 Atomic orbital electron populations 1.70849 1.07129 1.31442 1.45706 1.26737 0.96697 1.04953 0.91875 0.83319 0.74887 0.72954 0.77758 1.19999 1.20862 1.19270 1.21583 0.93818 0.91743 1.56816 0.94398 1.18654 1.00859 0.95456 0.86709 1.30021 1.16564 1.09622 1.13098 1.04505 0.76374 0.72636 0.74452 1.93465 1.65101 1.57506 1.81210 1.93493 1.76537 1.51195 1.76844 1.57778 1.74908 1.16231 1.34560 1.21854 0.97952 0.77390 1.04808 1.21956 0.94072 1.02806 0.97729 1.21836 1.03325 0.90062 1.00136 1.22055 0.94634 0.95015 0.86569 0.87615 1.45686 1.28471 1.30629 1.08563 1.23171 0.97625 0.97235 1.01111 1.22622 1.02505 1.04197 0.90495 1.70270 1.09932 1.10409 1.34623 1.25406 1.02583 1.02593 0.79684 1.21767 0.93186 0.95327 0.91067 1.23108 0.97610 0.96689 1.04391 1.22790 0.95258 1.02053 0.99546 0.91747 0.86755 0.84068 0.88850 0.88918 0.90837 0.86719 0.89801 0.89267 0.79317 0.80192 0.75626 0.88557 0.90999 0.90065 0.87626 0.88267 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.44 13.61 21.45 0.29 -51.15 16 2 C 0.00 0.01 5.42 84.65 0.46 0.47 16 3 Si 1.09 50.61 29.91 68.60 2.05 52.66 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.60 -33.02 8.17 25.60 0.21 -32.81 16 8 H 0.04 2.19 7.82 -2.91 -0.02 2.16 16 9 C -0.01 -0.67 0.85 -52.93 -0.04 -0.71 16 10 C -0.56 -21.16 5.89 71.98 0.42 -20.74 16 11 S 2.62 99.02 5.15 -56.49 -0.29 98.73 16 12 O -0.98 -39.54 16.72 -127.65 -2.13 -41.68 16 13 O -0.99 -47.09 16.38 -127.65 -2.09 -49.19 16 14 N -1.00 -25.29 3.21 -512.31 -1.65 -26.94 16 15 C 0.10 1.78 6.31 86.36 0.55 2.33 16 16 C -0.13 -1.40 6.08 30.67 0.19 -1.21 16 17 C -0.12 -1.37 5.20 30.62 0.16 -1.21 16 18 C 0.12 2.21 3.02 45.22 0.14 2.35 16 19 H 0.11 1.96 8.08 -2.39 -0.02 1.94 16 20 N -0.45 -9.32 2.62 -505.38 -1.33 -10.64 16 21 C -0.06 -1.28 11.54 83.09 0.96 -0.32 16 22 C -0.05 -1.24 11.87 83.52 0.99 -0.25 16 23 N -0.53 -14.33 11.25 -200.30 -2.25 -16.58 16 24 C 0.18 3.85 11.49 180.26 2.07 5.92 16 25 C 0.11 2.67 5.73 86.51 0.50 3.17 16 26 C -0.18 -7.28 9.96 30.60 0.30 -6.98 16 27 C -0.16 -6.50 9.00 30.59 0.28 -6.23 16 28 H 0.27 14.72 6.07 -92.71 -0.56 14.15 16 29 H 0.11 4.59 7.60 -2.39 -0.02 4.57 16 30 H 0.14 4.00 8.09 -2.39 -0.02 3.98 16 31 H 0.09 1.69 7.10 -2.39 -0.02 1.68 16 32 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.85 7.99 -2.39 -0.02 0.83 16 37 H 0.19 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.18 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.23 3.23 8.06 -2.91 -0.02 3.20 16 40 H 0.10 1.90 7.82 -2.39 -0.02 1.89 16 41 H 0.07 2.17 7.09 -2.39 -0.02 2.15 16 42 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 44 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 45 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -76.45 377.68 0.95 -75.49 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 1.18 Total: 25.51 kcal Atomic # 6 Polarization: -63.39 SS G_CDS: 7.17 Total: -56.22 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.93 Total: -105.31 kcal Atomic # 8 Polarization: -86.64 SS G_CDS: -4.23 Total: -90.86 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Atomic # 16 Polarization: 99.02 SS G_CDS: -0.29 Total: 98.73 kcal Total: -76.45 0.95 -75.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.275 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds