Wall clock time and date at job start Tue Mar 31 2020 22:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48503 * 109.47331 * 269.99942 * 3 2 1 5 5 H 1.48500 * 109.47196 * 30.00343 * 3 2 1 6 6 H 1.48500 * 109.46996 * 150.00135 * 3 2 1 7 7 C 1.37872 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00621 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99547 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88529 * 303.87972 * 9 7 2 11 11 C 1.55165 * 111.00134 * 180.02562 * 9 7 2 12 12 C 1.54320 * 102.93913 * 206.38537 * 11 9 7 13 13 N 1.47027 * 107.27525 * 22.19264 * 12 11 9 14 14 C 1.34769 * 125.64934 * 181.02441 * 13 12 11 15 15 O 1.21587 * 120.00079 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00219 * 0.02562 * 14 13 12 17 17 C 1.46507 * 120.00260 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47241 * 180.02562 * 17 16 14 19 19 O 1.42901 * 109.47493 * 64.99846 * 18 17 16 20 20 C 1.35723 * 117.00218 * 180.02562 * 19 18 17 21 21 N 1.32223 * 119.69751 * 359.97438 * 20 19 18 22 22 C 1.31963 * 121.67618 * 180.02562 * 21 20 19 23 23 C 1.38069 * 120.87575 * 359.97438 * 22 21 20 24 24 C 1.38790 * 119.30490 * 0.25946 * 23 22 21 25 25 C 1.38572 * 118.46817 * 359.47411 * 24 23 22 26 26 F 1.35103 * 120.47020 * 180.26256 * 25 24 23 27 27 C 1.47426 * 108.69770 * 1.28723 * 13 12 11 28 28 H 0.97005 * 120.00363 * 359.97438 * 1 2 3 29 29 H 0.96690 * 114.00031 * 56.12246 * 10 9 7 30 30 H 1.08996 * 110.71592 * 88.02518 * 11 9 7 31 31 H 1.08997 * 110.87004 * 324.81909 * 11 9 7 32 32 H 1.09007 * 109.88360 * 262.77859 * 12 11 9 33 33 H 1.09001 * 109.88735 * 141.61099 * 12 11 9 34 34 H 0.96998 * 120.00453 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47079 * 59.99643 * 17 16 14 36 36 H 1.08999 * 109.46809 * 299.99673 * 17 16 14 37 37 H 1.09003 * 109.46889 * 304.99878 * 18 17 16 38 38 H 1.09002 * 109.47224 * 185.00042 * 18 17 16 39 39 H 1.07999 * 119.56723 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.34312 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.76696 * 179.72879 * 24 23 22 42 42 H 1.08997 * 110.36631 * 94.48514 * 27 13 12 43 43 H 1.09004 * 110.36349 * 216.80645 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3522 -2.5684 1.1082 11 6 2.2275 -3.7050 -0.0005 12 6 1.3979 -4.8214 -0.6689 13 7 0.3464 -4.1684 -1.4624 14 6 -0.6002 -4.8008 -2.1837 15 8 -1.4232 -4.1562 -2.8047 16 7 -0.6347 -6.1477 -2.2168 17 6 -1.6634 -6.8352 -3.0014 18 6 -1.4797 -8.3483 -2.8689 19 8 -1.7127 -8.7397 -1.5144 20 6 -1.5889 -10.0598 -1.2245 21 7 -1.2660 -10.9132 -2.1815 22 6 -1.1357 -12.2046 -1.9433 23 6 -1.3331 -12.7148 -0.6756 24 6 -1.6782 -11.8540 0.3569 25 6 -1.8019 -10.5025 0.0768 26 9 -2.1309 -9.6279 1.0525 27 6 0.5030 -2.7074 -1.3434 28 1 -0.4851 0.8401 0.0004 29 1 -0.2773 -1.8357 1.1506 30 1 2.4975 -3.9825 1.0183 31 1 3.1188 -3.4829 -0.5873 32 1 0.9465 -5.4553 0.0943 33 1 2.0364 -5.4187 -1.3198 34 1 0.0221 -6.6620 -1.7218 35 1 -1.5736 -6.5482 -4.0491 36 1 -2.6498 -6.5556 -2.6314 37 1 -0.4628 -8.6172 -3.1550 38 1 -2.1878 -8.8588 -3.5216 39 1 -0.8712 -12.8713 -2.7507 40 1 -1.2247 -13.7732 -0.4905 41 1 -1.8425 -12.2282 1.3566 42 1 1.0939 -2.3203 -2.1736 43 1 -0.4728 -2.2225 -1.3128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591990221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:24 Heat of formation + Delta-G solvation = -113.871845 kcal Electronic energy + Delta-G solvation = -29173.517029 eV Core-core repulsion = 24748.209085 eV Total energy + Delta-G solvation = -4425.307944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.13124 -40.91519 -39.62612 -38.48258 -37.29536 -34.54617 -34.19174 -32.75823 -32.10769 -31.10328 -30.18127 -29.01142 -27.68268 -25.20159 -24.43078 -23.69779 -22.80931 -22.03467 -19.63447 -19.52054 -18.99455 -18.07979 -17.61119 -17.42509 -17.02241 -16.86195 -15.93365 -15.85101 -15.36865 -15.11745 -14.94352 -14.68771 -14.39677 -14.15778 -13.99249 -13.66246 -13.43203 -13.24424 -12.96856 -12.86364 -12.79294 -12.52507 -12.12728 -11.77052 -11.56826 -11.44445 -11.34802 -11.01783 -10.74777 -10.54494 -10.46688 -10.30496 -10.25635 -10.14027 -9.60119 -9.35329 -8.82844 -8.82092 -8.64911 -8.31972 -7.62920 -6.25356 -4.35008 0.49394 0.64173 2.47354 3.13346 3.15969 3.23448 3.30358 3.33186 3.64110 3.79683 3.87810 4.21442 4.27814 4.41401 4.50228 4.58105 4.73898 4.92374 5.01682 5.09667 5.14448 5.37532 5.46425 5.47284 5.53491 5.69487 5.73873 5.85894 5.95145 6.08992 6.15217 6.55892 6.71580 6.75078 6.81284 6.91475 7.00260 7.24208 7.27299 7.37067 7.66699 7.78236 8.04578 8.57173 8.69178 9.16808 9.34789 9.51686 10.81846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002293 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.572301 B =12207.818933 C =12728.715116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.626 5.626 14 C 0.717 3.283 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.142 3.858 18 C 0.061 3.939 19 O -0.292 6.292 20 C 0.301 3.699 21 N -0.516 5.516 22 C 0.129 3.871 23 C -0.186 4.186 24 C -0.076 4.076 25 C 0.033 3.967 26 F -0.120 7.120 27 C 0.112 3.888 28 H 0.271 0.729 29 H 0.386 0.614 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.395 0.605 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.057 0.943 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -26.061 -3.096 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.363 5.363 14 C 0.419 3.581 15 O -0.478 6.478 16 N -0.408 5.408 17 C 0.017 3.983 18 C -0.015 4.015 19 O -0.199 6.199 20 C 0.121 3.879 21 N -0.240 5.240 22 C -0.027 4.027 23 C -0.206 4.206 24 C -0.102 4.102 25 C 0.010 3.990 26 F -0.098 7.098 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.238 0.762 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.075 0.925 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.950 -25.411 -4.128 25.818 hybrid contribution 0.272 0.814 0.864 1.218 sum -1.678 -24.597 -3.264 24.869 Atomic orbital electron populations 1.69574 1.06016 1.27972 1.49749 1.25090 0.95035 0.99789 0.93377 0.86388 0.79753 0.82397 0.78257 1.20421 1.20996 1.19711 1.21494 0.93670 0.90100 1.52289 0.91489 1.19631 0.85768 0.91565 0.82217 1.86063 1.51080 1.53002 1.49212 1.22595 0.97807 0.94898 1.00119 1.21924 0.89602 0.96443 0.93819 1.47878 1.29894 1.09382 1.49134 1.15483 0.81406 0.81084 0.80109 1.90881 1.41804 1.65431 1.49636 1.45043 1.35320 1.05261 1.55191 1.21210 0.92879 0.87327 0.96881 1.23067 1.02910 0.94959 0.80528 1.86411 1.83848 1.17975 1.31620 1.19945 0.93548 0.85610 0.88847 1.67484 1.17837 1.04999 1.33658 1.22542 0.93728 0.89841 0.96541 1.21927 1.03981 1.01558 0.93144 1.21566 0.96732 0.90230 1.01702 1.17708 1.08554 0.88331 0.84388 1.91581 1.90070 1.68017 1.60148 1.23198 1.02334 0.75451 1.00056 0.91872 0.76192 0.90795 0.90518 0.92600 0.93288 0.77128 0.89286 0.90638 0.90532 0.89609 0.81537 0.83493 0.82818 0.92478 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 10.72 55.43 0.59 -23.66 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.11 8.25 -34.44 -0.28 -14.39 16 8 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 9 C 0.25 6.17 0.89 -89.50 -0.08 6.09 16 10 O -0.58 -15.43 13.19 -35.23 -0.46 -15.89 16 11 C -0.12 -2.35 6.12 -24.89 -0.15 -2.51 16 12 C 0.11 1.93 6.15 -3.06 -0.02 1.91 16 13 N -0.63 -13.51 3.32 -176.10 -0.59 -14.10 16 14 C 0.72 15.19 8.49 -86.93 -0.74 14.45 16 15 O -0.60 -14.86 16.60 5.29 0.09 -14.77 16 16 N -0.75 -12.00 5.46 -65.23 -0.36 -12.35 16 17 C 0.14 1.84 6.06 -4.04 -0.02 1.82 16 18 C 0.06 0.63 5.44 37.15 0.20 0.83 16 19 O -0.29 -3.66 9.93 -18.88 -0.19 -3.85 16 20 C 0.30 3.37 7.50 -17.07 -0.13 3.24 16 21 N -0.52 -4.88 9.22 -13.27 -0.12 -5.00 16 22 C 0.13 0.81 11.17 -17.56 -0.20 0.61 16 23 C -0.19 -0.95 10.10 -39.44 -0.40 -1.35 16 24 C -0.08 -0.52 10.16 -39.25 -0.40 -0.92 16 25 C 0.03 0.34 7.35 -39.14 -0.29 0.05 16 26 F -0.12 -1.52 17.13 2.25 0.04 -1.48 16 27 C 0.11 2.77 5.65 -2.41 -0.01 2.76 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 29 H 0.39 10.58 6.93 45.56 0.32 10.89 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.39 5.63 7.46 -40.82 -0.30 5.32 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 40 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 42 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 43 H 0.08 2.27 7.64 -51.93 -0.40 1.87 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -33.08 370.32 -8.03 -41.11 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -4.99 Total: 14.56 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -2.61 Total: 14.34 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.47 Total: -55.11 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.56 Total: -34.51 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.08 -8.03 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.761 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds