Wall clock time and date at job start Tue Mar 31 2020 22:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48503 * 109.47331 * 269.99942 * 3 2 1 5 5 H 1.48500 * 109.47196 * 30.00343 * 3 2 1 6 6 H 1.48500 * 109.46996 * 150.00135 * 3 2 1 7 7 C 1.37872 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00621 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99547 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88529 * 303.87972 * 9 7 2 11 11 C 1.55165 * 111.00134 * 180.02562 * 9 7 2 12 12 C 1.54320 * 102.93913 * 206.38537 * 11 9 7 13 13 N 1.47027 * 107.27525 * 22.19264 * 12 11 9 14 14 C 1.34769 * 125.64934 * 181.02441 * 13 12 11 15 15 O 1.21587 * 120.00079 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00219 * 0.02562 * 14 13 12 17 17 C 1.46507 * 120.00260 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47241 * 180.02562 * 17 16 14 19 19 O 1.42901 * 109.47493 * 64.99846 * 18 17 16 20 20 C 1.35723 * 117.00218 * 180.02562 * 19 18 17 21 21 N 1.32223 * 119.69751 * 359.97438 * 20 19 18 22 22 C 1.31963 * 121.67618 * 180.02562 * 21 20 19 23 23 C 1.38069 * 120.87575 * 359.97438 * 22 21 20 24 24 C 1.38790 * 119.30490 * 0.25946 * 23 22 21 25 25 C 1.38572 * 118.46817 * 359.47411 * 24 23 22 26 26 F 1.35103 * 120.47020 * 180.26256 * 25 24 23 27 27 C 1.47426 * 108.69770 * 1.28723 * 13 12 11 28 28 H 0.97005 * 120.00363 * 359.97438 * 1 2 3 29 29 H 0.96690 * 114.00031 * 56.12246 * 10 9 7 30 30 H 1.08996 * 110.71592 * 88.02518 * 11 9 7 31 31 H 1.08997 * 110.87004 * 324.81909 * 11 9 7 32 32 H 1.09007 * 109.88360 * 262.77859 * 12 11 9 33 33 H 1.09001 * 109.88735 * 141.61099 * 12 11 9 34 34 H 0.96998 * 120.00453 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47079 * 59.99643 * 17 16 14 36 36 H 1.08999 * 109.46809 * 299.99673 * 17 16 14 37 37 H 1.09003 * 109.46889 * 304.99878 * 18 17 16 38 38 H 1.09002 * 109.47224 * 185.00042 * 18 17 16 39 39 H 1.07999 * 119.56723 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.34312 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.76696 * 179.72879 * 24 23 22 42 42 H 1.08997 * 110.36631 * 94.48514 * 27 13 12 43 43 H 1.09004 * 110.36349 * 216.80645 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3522 -2.5684 1.1082 11 6 2.2275 -3.7050 -0.0005 12 6 1.3979 -4.8214 -0.6689 13 7 0.3464 -4.1684 -1.4624 14 6 -0.6002 -4.8008 -2.1837 15 8 -1.4232 -4.1562 -2.8047 16 7 -0.6347 -6.1477 -2.2168 17 6 -1.6634 -6.8352 -3.0014 18 6 -1.4797 -8.3483 -2.8689 19 8 -1.7127 -8.7397 -1.5144 20 6 -1.5889 -10.0598 -1.2245 21 7 -1.2660 -10.9132 -2.1815 22 6 -1.1357 -12.2046 -1.9433 23 6 -1.3331 -12.7148 -0.6756 24 6 -1.6782 -11.8540 0.3569 25 6 -1.8019 -10.5025 0.0768 26 9 -2.1309 -9.6279 1.0525 27 6 0.5030 -2.7074 -1.3434 28 1 -0.4851 0.8401 0.0004 29 1 -0.2773 -1.8357 1.1506 30 1 2.4975 -3.9825 1.0183 31 1 3.1188 -3.4829 -0.5873 32 1 0.9465 -5.4553 0.0943 33 1 2.0364 -5.4187 -1.3198 34 1 0.0221 -6.6620 -1.7218 35 1 -1.5736 -6.5482 -4.0491 36 1 -2.6498 -6.5556 -2.6314 37 1 -0.4628 -8.6172 -3.1550 38 1 -2.1878 -8.8588 -3.5216 39 1 -0.8712 -12.8713 -2.7507 40 1 -1.2247 -13.7732 -0.4905 41 1 -1.8425 -12.2282 1.3566 42 1 1.0939 -2.3203 -2.1736 43 1 -0.4728 -2.2225 -1.3128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591990221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:24 Heat of formation + Delta-G solvation = -140.645430 kcal Electronic energy + Delta-G solvation = -29174.678019 eV Core-core repulsion = 24748.209085 eV Total energy + Delta-G solvation = -4426.468934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93030 -41.60723 -41.21289 -39.41637 -38.92309 -36.08648 -35.90859 -34.15540 -33.32595 -32.26823 -31.41667 -30.16338 -29.44773 -26.96136 -25.33696 -24.32238 -24.23561 -23.13603 -21.46401 -21.10586 -19.71645 -19.36789 -18.95555 -18.60193 -18.17265 -17.76160 -17.24370 -16.95581 -16.90702 -16.34074 -16.25576 -16.12903 -15.71431 -15.36635 -15.05639 -14.82474 -14.64325 -14.61283 -14.21389 -14.03678 -13.84410 -13.75528 -13.49763 -13.37327 -13.26254 -12.84735 -12.71716 -12.54004 -12.32013 -12.22477 -12.16524 -12.11405 -11.37609 -11.22553 -10.88585 -10.84155 -10.65328 -10.36991 -10.24270 -9.47121 -9.35147 -8.25280 -6.42711 -0.08377 0.09047 1.42614 1.44231 1.54547 1.63023 1.77727 2.12307 2.38367 2.59522 2.99622 3.00711 3.05115 3.31113 3.63025 3.77119 3.79252 3.98355 4.04864 4.10603 4.16828 4.20141 4.31088 4.35582 4.56601 4.59138 4.62721 4.73146 4.75260 4.93276 5.02420 5.03339 5.07866 5.27260 5.35539 5.39105 5.43922 5.44170 5.76470 6.00877 6.08417 6.12668 6.64672 6.66249 7.01075 7.29937 7.38880 7.52063 8.80535 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002293 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.572301 B =12207.818933 C =12728.715116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.231 3.769 10 O -0.591 6.591 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.633 5.633 14 C 0.710 3.290 15 O -0.643 6.643 16 N -0.730 5.730 17 C 0.139 3.861 18 C 0.074 3.926 19 O -0.320 6.320 20 C 0.276 3.724 21 N -0.530 5.530 22 C 0.127 3.873 23 C -0.167 4.167 24 C -0.070 4.070 25 C -0.004 4.004 26 F -0.143 7.143 27 C 0.125 3.875 28 H 0.270 0.730 29 H 0.377 0.623 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.406 0.594 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.203 0.797 40 H 0.189 0.811 41 H 0.178 0.822 42 H 0.046 0.954 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -29.399 -3.410 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.091 0.909 9 C 0.191 3.809 10 O -0.400 6.400 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.369 5.369 14 C 0.412 3.588 15 O -0.526 6.526 16 N -0.388 5.388 17 C 0.016 3.984 18 C -0.001 4.001 19 O -0.228 6.228 20 C 0.097 3.903 21 N -0.254 5.254 22 C -0.028 4.028 23 C -0.187 4.187 24 C -0.096 4.096 25 C -0.027 4.027 26 F -0.122 7.122 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.242 0.758 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.220 0.780 40 H 0.206 0.794 41 H 0.195 0.805 42 H 0.064 0.936 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.140 -28.828 -4.429 29.166 hybrid contribution -0.302 1.663 0.943 1.935 sum -0.442 -27.165 -3.485 27.391 Atomic orbital electron populations 1.69699 1.07340 1.28535 1.50370 1.25889 0.95756 1.03078 0.93055 0.85396 0.78695 0.78368 0.78201 1.20172 1.21003 1.18781 1.21828 0.94088 0.91067 1.52243 0.90935 1.19914 0.86226 0.93351 0.81441 1.86055 1.51240 1.52573 1.50153 1.22602 0.97480 0.93314 1.01381 1.22093 0.89011 0.95931 0.94394 1.47840 1.31020 1.08311 1.49745 1.15717 0.80825 0.82485 0.79752 1.90841 1.43441 1.66826 1.51469 1.44922 1.35768 1.03339 1.54728 1.21394 0.91128 0.89112 0.96804 1.22952 1.04058 0.92593 0.80493 1.86345 1.84650 1.19483 1.32323 1.20066 0.95393 0.85304 0.89573 1.67507 1.18263 1.06251 1.33346 1.23296 0.92166 0.89093 0.98264 1.22410 1.01159 1.03185 0.91907 1.21966 0.95392 0.88792 1.03486 1.18181 1.10904 0.89555 0.84017 1.91508 1.90672 1.69070 1.60986 1.22767 0.99655 0.77443 0.99999 0.92012 0.77266 0.89812 0.88884 0.91703 0.89125 0.75778 0.88263 0.92393 0.89332 0.87891 0.78020 0.79373 0.80508 0.93591 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 10.72 21.45 0.23 -51.34 16 2 C 0.02 1.20 5.30 84.65 0.45 1.65 16 3 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -29.28 8.25 25.60 0.21 -29.06 16 8 H 0.07 3.66 7.76 -2.91 -0.02 3.64 16 9 C 0.23 11.59 0.89 -10.07 -0.01 11.58 16 10 O -0.59 -32.08 13.19 -148.98 -1.97 -34.04 16 11 C -0.11 -4.29 6.12 31.78 0.19 -4.10 16 12 C 0.11 3.74 6.15 86.73 0.53 4.28 16 13 N -0.63 -27.50 3.32 -829.32 -2.76 -30.26 16 14 C 0.71 30.59 8.49 179.06 1.52 32.11 16 15 O -0.64 -33.21 16.60 -3.99 -0.07 -33.27 16 16 N -0.73 -23.13 5.46 -478.54 -2.61 -25.74 16 17 C 0.14 3.62 6.06 86.38 0.52 4.14 16 18 C 0.07 1.47 5.44 71.98 0.39 1.86 16 19 O -0.32 -8.04 9.93 -90.46 -0.90 -8.94 16 20 C 0.28 6.01 7.50 84.84 0.64 6.65 16 21 N -0.53 -8.94 9.22 -308.76 -2.85 -11.79 16 22 C 0.13 1.13 11.17 84.63 0.95 2.08 16 23 C -0.17 -1.02 10.10 22.36 0.23 -0.80 16 24 C -0.07 -0.80 10.16 22.48 0.23 -0.57 16 25 C 0.00 -0.09 7.35 22.55 0.17 0.07 16 26 F -0.14 -3.78 17.13 44.97 0.77 -3.01 16 27 C 0.13 6.42 5.65 86.93 0.49 6.91 16 28 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 29 H 0.38 21.60 6.93 -74.06 -0.51 21.09 16 30 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.09 3.30 8.02 -2.39 -0.02 3.28 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.41 11.06 7.46 -92.71 -0.69 10.37 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.10 1.68 8.11 -2.39 -0.02 1.66 16 39 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.19 -0.38 8.06 -2.91 -0.02 -0.41 16 41 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 43 H 0.04 2.21 7.64 -2.38 -0.02 2.19 16 Total: -1.00 -76.23 370.32 -1.76 -77.98 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.14 Total: 39.21 kcal Atomic # 6 Polarization: 30.29 SS G_CDS: 6.51 Total: 36.79 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -7.99 Total: -119.13 kcal Atomic # 8 Polarization: -73.33 SS G_CDS: -2.93 Total: -76.26 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.77 Total: -3.01 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -76.23 -1.76 -77.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.661 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds