Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48494 * 109.47067 * 269.99862 * 3 2 1 5 5 H 1.48499 * 109.47084 * 29.99824 * 3 2 1 6 6 H 1.48501 * 109.46935 * 149.99838 * 3 2 1 7 7 C 1.37873 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00468 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00106 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88797 * 62.41968 * 9 7 2 11 11 C 1.55157 * 111.03983 * 186.32995 * 9 7 2 12 12 C 1.54334 * 103.02315 * 153.39777 * 11 9 7 13 13 N 1.47028 * 107.26445 * 338.13515 * 12 11 9 14 14 C 1.34774 * 125.64851 * 178.85287 * 13 12 11 15 15 O 1.21585 * 119.99923 * 179.69429 * 14 13 12 16 16 N 1.34781 * 120.00033 * 359.69687 * 14 13 12 17 17 C 1.46495 * 120.00000 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47167 * 179.97438 * 17 16 14 19 19 O 1.42900 * 109.46930 * 64.99644 * 18 17 16 20 20 C 1.35725 * 116.99871 * 179.97438 * 19 18 17 21 21 N 1.32227 * 119.69824 * 0.02562 * 20 19 18 22 22 C 1.31960 * 121.67522 * 179.74970 * 21 20 19 23 23 C 1.38064 * 120.87831 * 0.49362 * 22 21 20 24 24 C 1.38796 * 119.30384 * 359.49539 * 23 22 21 25 25 C 1.38571 * 118.46555 * 0.25181 * 24 23 22 26 26 F 1.35100 * 120.46406 * 180.02562 * 25 24 23 27 27 C 1.47424 * 108.70157 * 358.58986 * 13 12 11 28 28 H 0.97000 * 120.00131 * 359.97438 * 1 2 3 29 29 H 0.96693 * 114.00399 * 297.57620 * 10 9 7 30 30 H 1.09003 * 110.71680 * 271.94855 * 11 9 7 31 31 H 1.09000 * 110.72059 * 35.22299 * 11 9 7 32 32 H 1.08997 * 109.98897 * 218.66349 * 12 11 9 33 33 H 1.09001 * 109.78682 * 97.49361 * 12 11 9 34 34 H 0.97000 * 119.99393 * 359.97438 * 16 14 13 35 35 H 1.08994 * 109.47566 * 59.99070 * 17 16 14 36 36 H 1.09008 * 109.46929 * 299.99251 * 17 16 14 37 37 H 1.08996 * 109.46779 * 304.99513 * 18 17 16 38 38 H 1.09001 * 109.47032 * 184.99131 * 18 17 16 39 39 H 1.08003 * 119.56343 * 180.24261 * 22 21 20 40 40 H 1.08002 * 120.35044 * 179.77669 * 23 22 21 41 41 H 1.08003 * 120.76596 * 180.27541 * 24 23 22 42 42 H 1.09004 * 110.36883 * 143.19360 * 27 13 12 43 43 H 1.08998 * 110.37005 * 265.40730 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4615 -2.6316 -1.1831 11 6 2.2190 -3.7011 0.1608 12 6 1.3286 -4.7801 0.8125 13 7 0.2054 -4.0865 1.4598 14 6 -0.8078 -4.6797 2.1215 15 8 -1.6840 -4.0033 2.6244 16 7 -0.8498 -6.0229 2.2257 17 6 -1.9515 -6.6677 2.9444 18 6 -1.7609 -8.1855 2.9142 19 8 -0.5807 -8.5319 3.6417 20 6 -0.2655 -9.8501 3.7129 21 7 -1.0417 -10.7422 3.1213 22 6 -0.7696 -12.0328 3.1616 23 6 0.3393 -12.5024 3.8370 24 6 1.1810 -11.5994 4.4715 25 6 0.8714 -10.2503 4.4070 26 9 1.6631 -9.3363 5.0097 27 6 0.3745 -2.6343 1.2707 28 1 -0.4850 0.8400 0.0004 29 1 -0.2244 -1.9564 -1.2760 30 1 2.5842 -4.0344 -0.8106 31 1 3.0492 -3.4427 0.8182 32 1 1.9000 -5.3351 1.5566 33 1 0.9532 -5.4600 0.0477 34 1 -0.1509 -6.5625 1.8241 35 1 -2.8968 -6.4109 2.4664 36 1 -1.9618 -6.3230 3.9785 37 1 -1.6619 -8.5187 1.8812 38 1 -2.6243 -8.6692 3.3710 39 1 -1.4251 -12.7315 2.6629 40 1 0.5519 -13.5608 3.8675 41 1 2.0573 -11.9405 5.0029 42 1 -0.5930 -2.1565 1.1164 43 1 0.8803 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591990226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = -113.974374 kcal Electronic energy + Delta-G solvation = -29125.391550 eV Core-core repulsion = 24700.079159 eV Total energy + Delta-G solvation = -4425.312390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.17231 -40.93250 -39.62915 -38.49839 -37.31380 -34.54514 -34.17045 -32.77755 -32.19144 -31.11150 -30.18446 -29.01690 -27.64373 -25.20653 -24.44311 -23.71742 -22.81814 -22.04002 -19.64743 -19.53328 -19.00861 -18.10030 -17.63312 -17.42198 -16.99521 -16.86133 -15.94458 -15.88073 -15.30017 -15.23780 -14.92714 -14.72662 -14.38897 -14.15777 -14.03498 -13.67524 -13.44456 -13.26554 -12.97770 -12.88886 -12.75701 -12.55928 -12.10104 -11.79466 -11.60361 -11.45539 -11.30507 -11.00660 -10.78449 -10.56071 -10.43727 -10.32639 -10.26936 -10.15550 -9.58822 -9.32431 -8.84655 -8.82128 -8.65904 -8.31520 -7.63759 -6.23615 -4.33329 0.47336 0.62386 2.45656 3.12559 3.15443 3.24654 3.31338 3.33837 3.62030 3.79887 3.85871 4.19319 4.29008 4.39603 4.50571 4.57334 4.72506 4.92616 5.03491 5.07683 5.14507 5.35528 5.45510 5.46034 5.54312 5.70480 5.72158 5.83169 5.93354 6.05942 6.15730 6.55499 6.71108 6.74892 6.80095 6.93666 7.01060 7.22866 7.27999 7.37095 7.68407 7.78408 8.07764 8.57623 8.71061 9.17246 9.34079 9.42250 10.83423 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002244 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.633226 B =12474.192149 C =12907.902966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.717 3.283 15 O -0.598 6.598 16 N -0.751 5.751 17 C 0.142 3.858 18 C 0.060 3.940 19 O -0.293 6.293 20 C 0.302 3.698 21 N -0.515 5.515 22 C 0.130 3.870 23 C -0.186 4.186 24 C -0.076 4.076 25 C 0.031 3.969 26 F -0.121 7.121 27 C 0.114 3.886 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.085 0.915 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -25.841 6.799 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.419 3.581 15 O -0.477 6.477 16 N -0.408 5.408 17 C 0.017 3.983 18 C -0.015 4.015 19 O -0.200 6.200 20 C 0.121 3.879 21 N -0.239 5.239 22 C -0.026 4.026 23 C -0.206 4.206 24 C -0.102 4.102 25 C 0.009 3.991 26 F -0.099 7.099 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.104 0.896 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.374 -25.157 6.815 26.100 hybrid contribution 1.110 0.812 0.408 1.435 sum -0.264 -24.344 7.223 25.395 Atomic orbital electron populations 1.69721 1.05964 1.27860 1.49467 1.25083 0.95042 0.99739 0.93405 0.86408 0.79776 0.82498 0.78239 1.20436 1.21027 1.19721 1.21450 0.93615 0.90047 1.52439 0.91555 1.19637 0.86659 0.91534 0.81419 1.86097 1.51546 1.57149 1.44347 1.22589 0.97558 0.95191 1.00013 1.21929 0.88338 0.96049 0.95524 1.47918 1.23157 1.09771 1.55571 1.15480 0.81920 0.81223 0.79460 1.90884 1.39739 1.63230 1.53831 1.45046 1.28891 1.05608 1.61297 1.21209 0.90787 0.87910 0.98357 1.23081 0.86118 0.95402 0.96894 1.86396 1.45219 1.17901 1.70438 1.19943 0.90072 0.85576 0.92316 1.67492 1.30815 1.03810 1.21805 1.22553 0.95094 0.90258 0.94647 1.21932 0.96452 1.01337 1.00902 1.21562 1.00461 0.90038 0.98146 1.17694 0.91810 0.87613 1.01985 1.91568 1.71988 1.65403 1.80984 1.23130 1.02541 0.75637 0.99495 0.92021 0.76941 0.90813 0.90428 0.93104 0.92782 0.77132 0.89240 0.90689 0.90451 0.89590 0.81503 0.83478 0.82838 0.89636 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.14 10.69 55.43 0.59 -23.55 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.13 8.27 -34.44 -0.28 -14.42 16 8 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 9 C 0.25 6.09 0.87 -89.62 -0.08 6.02 16 10 O -0.58 -15.02 13.16 -35.23 -0.46 -15.48 16 11 C -0.12 -2.34 6.13 -24.89 -0.15 -2.49 16 12 C 0.11 1.92 6.15 -3.06 -0.02 1.90 16 13 N -0.63 -13.52 3.33 -176.22 -0.59 -14.11 16 14 C 0.72 15.18 8.49 -86.92 -0.74 14.44 16 15 O -0.60 -14.85 16.60 5.29 0.09 -14.76 16 16 N -0.75 -11.99 5.46 -65.23 -0.36 -12.34 16 17 C 0.14 1.84 6.06 -4.04 -0.02 1.82 16 18 C 0.06 0.62 5.44 37.16 0.20 0.82 16 19 O -0.29 -3.57 9.93 -18.88 -0.19 -3.76 16 20 C 0.30 3.29 7.50 -17.07 -0.13 3.17 16 21 N -0.52 -4.83 9.22 -13.27 -0.12 -4.95 16 22 C 0.13 0.80 11.17 -17.56 -0.20 0.61 16 23 C -0.19 -0.92 10.10 -39.44 -0.40 -1.32 16 24 C -0.08 -0.50 10.16 -39.25 -0.40 -0.90 16 25 C 0.03 0.31 7.35 -39.14 -0.29 0.03 16 26 F -0.12 -1.45 17.13 2.25 0.04 -1.41 16 27 C 0.11 2.83 5.38 -2.53 -0.01 2.81 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.38 10.08 7.56 45.56 0.34 10.42 16 30 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.39 5.62 7.46 -40.82 -0.30 5.31 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.08 0.76 8.10 -51.93 -0.42 0.33 16 38 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 40 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.09 2.38 7.33 -51.93 -0.38 2.00 16 43 H 0.06 1.47 8.03 -51.93 -0.42 1.05 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -32.89 370.35 -7.99 -40.88 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -4.94 Total: 14.06 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -2.61 Total: 14.26 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.47 Total: -54.95 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.56 Total: -34.00 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.89 -7.99 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.092 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds