Wall clock time and date at job start Tue Mar 31 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48494 * 109.47067 * 269.99862 * 3 2 1 5 5 H 1.48499 * 109.47084 * 29.99824 * 3 2 1 6 6 H 1.48501 * 109.46935 * 149.99838 * 3 2 1 7 7 C 1.37873 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00468 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00106 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88797 * 62.41968 * 9 7 2 11 11 C 1.55157 * 111.03983 * 186.32995 * 9 7 2 12 12 C 1.54334 * 103.02315 * 153.39777 * 11 9 7 13 13 N 1.47028 * 107.26445 * 338.13515 * 12 11 9 14 14 C 1.34774 * 125.64851 * 178.85287 * 13 12 11 15 15 O 1.21585 * 119.99923 * 179.69429 * 14 13 12 16 16 N 1.34781 * 120.00033 * 359.69687 * 14 13 12 17 17 C 1.46495 * 120.00000 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47167 * 179.97438 * 17 16 14 19 19 O 1.42900 * 109.46930 * 64.99644 * 18 17 16 20 20 C 1.35725 * 116.99871 * 179.97438 * 19 18 17 21 21 N 1.32227 * 119.69824 * 0.02562 * 20 19 18 22 22 C 1.31960 * 121.67522 * 179.74970 * 21 20 19 23 23 C 1.38064 * 120.87831 * 0.49362 * 22 21 20 24 24 C 1.38796 * 119.30384 * 359.49539 * 23 22 21 25 25 C 1.38571 * 118.46555 * 0.25181 * 24 23 22 26 26 F 1.35100 * 120.46406 * 180.02562 * 25 24 23 27 27 C 1.47424 * 108.70157 * 358.58986 * 13 12 11 28 28 H 0.97000 * 120.00131 * 359.97438 * 1 2 3 29 29 H 0.96693 * 114.00399 * 297.57620 * 10 9 7 30 30 H 1.09003 * 110.71680 * 271.94855 * 11 9 7 31 31 H 1.09000 * 110.72059 * 35.22299 * 11 9 7 32 32 H 1.08997 * 109.98897 * 218.66349 * 12 11 9 33 33 H 1.09001 * 109.78682 * 97.49361 * 12 11 9 34 34 H 0.97000 * 119.99393 * 359.97438 * 16 14 13 35 35 H 1.08994 * 109.47566 * 59.99070 * 17 16 14 36 36 H 1.09008 * 109.46929 * 299.99251 * 17 16 14 37 37 H 1.08996 * 109.46779 * 304.99513 * 18 17 16 38 38 H 1.09001 * 109.47032 * 184.99131 * 18 17 16 39 39 H 1.08003 * 119.56343 * 180.24261 * 22 21 20 40 40 H 1.08002 * 120.35044 * 179.77669 * 23 22 21 41 41 H 1.08003 * 120.76596 * 180.27541 * 24 23 22 42 42 H 1.09004 * 110.36883 * 143.19360 * 27 13 12 43 43 H 1.08998 * 110.37005 * 265.40730 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4615 -2.6316 -1.1831 11 6 2.2190 -3.7011 0.1608 12 6 1.3286 -4.7801 0.8125 13 7 0.2054 -4.0865 1.4598 14 6 -0.8078 -4.6797 2.1215 15 8 -1.6840 -4.0033 2.6244 16 7 -0.8498 -6.0229 2.2257 17 6 -1.9515 -6.6677 2.9444 18 6 -1.7609 -8.1855 2.9142 19 8 -0.5807 -8.5319 3.6417 20 6 -0.2655 -9.8501 3.7129 21 7 -1.0417 -10.7422 3.1213 22 6 -0.7696 -12.0328 3.1616 23 6 0.3393 -12.5024 3.8370 24 6 1.1810 -11.5994 4.4715 25 6 0.8714 -10.2503 4.4070 26 9 1.6631 -9.3363 5.0097 27 6 0.3745 -2.6343 1.2707 28 1 -0.4850 0.8400 0.0004 29 1 -0.2244 -1.9564 -1.2760 30 1 2.5842 -4.0344 -0.8106 31 1 3.0492 -3.4427 0.8182 32 1 1.9000 -5.3351 1.5566 33 1 0.9532 -5.4600 0.0477 34 1 -0.1509 -6.5625 1.8241 35 1 -2.8968 -6.4109 2.4664 36 1 -1.9618 -6.3230 3.9785 37 1 -1.6619 -8.5187 1.8812 38 1 -2.6243 -8.6692 3.3710 39 1 -1.4251 -12.7315 2.6629 40 1 0.5519 -13.5608 3.8675 41 1 2.0573 -11.9405 5.0029 42 1 -0.5930 -2.1565 1.1164 43 1 0.8803 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591990226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:27 Heat of formation + Delta-G solvation = -140.530879 kcal Electronic energy + Delta-G solvation = -29126.543126 eV Core-core repulsion = 24700.079159 eV Total energy + Delta-G solvation = -4426.463967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.92551 -41.60562 -41.21521 -39.42225 -38.92620 -36.05270 -35.89886 -34.23019 -33.32418 -32.25683 -31.41620 -30.15862 -29.41227 -26.96333 -25.33850 -24.32400 -24.23992 -23.13678 -21.48025 -21.10707 -19.71143 -19.33816 -18.92339 -18.59020 -18.17318 -17.76502 -17.25318 -16.96067 -16.87553 -16.38034 -16.25921 -16.12808 -15.71812 -15.36913 -15.08613 -14.79778 -14.62220 -14.60517 -14.23290 -14.03449 -13.87974 -13.69382 -13.50373 -13.39884 -13.25105 -12.83917 -12.71922 -12.54530 -12.34245 -12.23518 -12.16723 -12.10346 -11.36098 -11.19698 -10.88401 -10.83601 -10.66358 -10.34676 -10.24656 -9.46979 -9.35685 -8.24008 -6.41368 -0.08134 0.09454 1.42080 1.44137 1.54084 1.63759 1.77140 2.12225 2.38702 2.59724 2.99675 3.01779 3.05352 3.31248 3.63065 3.77181 3.78453 3.98528 4.04809 4.07260 4.16978 4.19959 4.31700 4.35389 4.56955 4.59090 4.62862 4.72537 4.75786 4.93454 5.02530 5.05548 5.08821 5.27475 5.34819 5.38764 5.44062 5.45788 5.75988 6.03504 6.07863 6.14216 6.65801 6.66836 7.01261 7.27738 7.35291 7.52481 8.81297 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002244 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.633226 B =12474.192149 C =12907.902966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.711 3.289 15 O -0.643 6.643 16 N -0.730 5.730 17 C 0.140 3.860 18 C 0.074 3.926 19 O -0.318 6.318 20 C 0.276 3.724 21 N -0.532 5.532 22 C 0.126 3.874 23 C -0.167 4.167 24 C -0.070 4.070 25 C -0.002 4.002 26 F -0.142 7.142 27 C 0.128 3.872 28 H 0.269 0.731 29 H 0.373 0.627 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.406 0.594 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.201 0.799 40 H 0.189 0.811 41 H 0.179 0.821 42 H 0.045 0.955 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.902 -29.188 6.595 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.412 3.588 15 O -0.525 6.525 16 N -0.388 5.388 17 C 0.016 3.984 18 C -0.001 4.001 19 O -0.226 6.226 20 C 0.096 3.904 21 N -0.255 5.255 22 C -0.029 4.029 23 C -0.187 4.187 24 C -0.096 4.096 25 C -0.024 4.024 26 F -0.121 7.121 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.242 0.758 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.218 0.782 40 H 0.206 0.794 41 H 0.196 0.804 42 H 0.064 0.936 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.140 -28.583 6.603 29.336 hybrid contribution 0.710 1.670 0.484 1.878 sum 0.570 -26.913 7.087 27.836 Atomic orbital electron populations 1.69848 1.07193 1.28384 1.50005 1.25852 0.95771 1.02913 0.93094 0.85444 0.78677 0.78561 0.78282 1.19932 1.21208 1.18947 1.21782 0.93951 0.91159 1.52471 0.91253 1.19853 0.87150 0.93131 0.80595 1.86088 1.51448 1.56798 1.45060 1.22591 0.97167 0.93741 1.01255 1.22093 0.87246 0.95514 0.96614 1.47874 1.24358 1.08738 1.56068 1.15712 0.81297 0.82600 0.79143 1.90844 1.41375 1.64677 1.55627 1.44922 1.29708 1.03675 1.60471 1.21379 0.90023 0.89726 0.97270 1.22928 0.86642 0.93003 0.97480 1.86329 1.45743 1.19385 1.71133 1.20076 0.91099 0.85267 0.93941 1.67504 1.30940 1.05023 1.22070 1.23277 0.95878 0.89574 0.94173 1.22407 0.94841 1.02976 0.98465 1.21968 1.01331 0.88652 0.97649 1.18131 0.92175 0.88746 1.03366 1.91503 1.72571 1.66409 1.81586 1.22674 1.00180 0.77587 0.99097 0.92181 0.77867 0.89457 0.89378 0.89889 0.90903 0.75775 0.88738 0.91908 0.89632 0.87915 0.78188 0.79423 0.80403 0.93602 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.10 10.69 21.45 0.23 -50.87 16 2 C 0.02 1.31 5.29 84.65 0.45 1.76 16 3 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.56 -29.43 8.27 25.60 0.21 -29.22 16 8 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 9 C 0.23 11.56 0.87 -10.15 -0.01 11.55 16 10 O -0.59 -30.67 13.16 -148.98 -1.96 -32.64 16 11 C -0.11 -4.28 6.13 31.79 0.19 -4.09 16 12 C 0.11 3.72 6.15 86.73 0.53 4.26 16 13 N -0.63 -27.52 3.33 -829.71 -2.76 -30.28 16 14 C 0.71 30.57 8.49 179.05 1.52 32.09 16 15 O -0.64 -33.18 16.60 -3.98 -0.07 -33.25 16 16 N -0.73 -23.09 5.46 -478.54 -2.61 -25.71 16 17 C 0.14 3.63 6.06 86.38 0.52 4.15 16 18 C 0.07 1.48 5.44 71.98 0.39 1.87 16 19 O -0.32 -7.69 9.93 -90.48 -0.90 -8.59 16 20 C 0.28 5.80 7.50 84.84 0.64 6.44 16 21 N -0.53 -8.92 9.22 -308.76 -2.85 -11.77 16 22 C 0.13 1.12 11.17 84.63 0.95 2.07 16 23 C -0.17 -0.96 10.10 22.36 0.23 -0.74 16 24 C -0.07 -0.74 10.16 22.48 0.23 -0.51 16 25 C 0.00 -0.04 7.35 22.55 0.17 0.13 16 26 F -0.14 -3.45 17.13 44.97 0.77 -2.68 16 27 C 0.13 6.59 5.38 86.86 0.47 7.06 16 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.37 20.47 7.56 -74.06 -0.56 19.91 16 30 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.41 11.03 7.46 -92.71 -0.69 10.34 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 38 H 0.10 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.20 0.30 8.06 -2.91 -0.02 0.27 16 40 H 0.19 -0.43 8.06 -2.91 -0.02 -0.46 16 41 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.05 2.69 7.33 -2.39 -0.02 2.68 16 43 H 0.04 2.04 8.03 -2.39 -0.02 2.02 16 Total: -1.00 -75.05 370.35 -1.82 -76.87 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.19 Total: 37.51 kcal Atomic # 6 Polarization: 30.33 SS G_CDS: 6.48 Total: 36.81 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -7.99 Total: -118.63 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: -2.93 Total: -74.47 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.77 Total: -2.68 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -75.05 -1.82 -76.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.664 kcal (2) G-P(sol) polarization free energy of solvation -75.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds