Wall clock time and date at job start Tue Mar 31 2020 22:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99829 * 2 1 4 4 H 1.48499 * 109.46732 * 265.00676 * 3 2 1 5 5 H 1.48498 * 109.47189 * 25.00845 * 3 2 1 6 6 H 1.48504 * 109.46960 * 145.01110 * 3 2 1 7 7 C 1.37875 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 183.58463 * 7 2 1 9 9 C 1.50700 * 119.99804 * 3.58647 * 7 2 1 10 10 O 1.42899 * 110.78530 * 60.79472 * 9 7 2 11 11 C 1.54595 * 110.72642 * 297.54024 * 9 7 2 12 12 C 1.53988 * 105.13995 * 219.68889 * 11 9 7 13 13 N 1.47903 * 107.05887 * 358.77227 * 12 11 9 14 14 C 1.46905 * 110.99878 * 145.84548 * 13 12 11 15 15 C 1.50699 * 109.46891 * 69.87329 * 14 13 12 16 16 C 1.33334 * 125.94876 * 89.69357 * 15 14 13 17 17 N 1.32120 * 114.57610 * 179.82599 * 16 15 14 18 18 C 1.29686 * 116.86656 * 0.47574 * 17 16 15 19 19 N 1.38610 * 124.94864 * 179.74209 * 18 17 16 20 20 C 1.47010 * 111.00316 * 123.63409 * 19 18 17 21 21 C 1.53100 * 109.26104 * 177.60582 * 20 19 18 22 22 O 1.43018 * 109.25513 * 56.84895 * 21 20 19 23 23 C 1.43017 * 113.73983 * 301.32758 * 22 21 20 24 24 C 1.47018 * 111.00238 * 359.97438 * 19 18 17 25 25 S 1.70961 * 110.10303 * 359.73833 * 18 17 16 26 26 C 1.48528 * 105.82175 * 25.33397 * 13 12 11 27 27 H 0.97005 * 120.00121 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99860 * 291.40791 * 10 9 7 29 29 H 1.08994 * 110.30784 * 100.76654 * 11 9 7 30 30 H 1.09004 * 110.30211 * 338.59934 * 11 9 7 31 31 H 1.09005 * 109.91942 * 118.12823 * 12 11 9 32 32 H 1.08999 * 109.91896 * 239.42016 * 12 11 9 33 33 H 1.09001 * 109.46843 * 189.87562 * 14 13 12 34 34 H 1.08996 * 109.47281 * 309.87711 * 14 13 12 35 35 H 1.07998 * 122.71317 * 0.02562 * 16 15 14 36 36 H 1.09000 * 109.50534 * 297.53916 * 20 19 18 37 37 H 1.08996 * 109.50996 * 57.66669 * 20 19 18 38 38 H 1.08994 * 109.50603 * 296.91589 * 21 20 19 39 39 H 1.09006 * 109.54141 * 176.80234 * 21 20 19 40 40 H 1.08996 * 109.50312 * 298.74129 * 23 22 21 41 41 H 1.08999 * 109.54009 * 178.63271 * 23 22 21 42 42 H 1.09003 * 109.50372 * 302.33053 * 24 19 18 43 43 H 1.09006 * 109.50632 * 62.45768 * 24 19 18 44 44 H 1.08998 * 110.67132 * 79.22554 * 26 13 12 45 45 H 1.09000 * 110.66860 * 202.18942 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6021 1.9855 -1.3948 5 1 1.3978 2.6809 0.5919 6 1 3.4900 1.4730 0.8029 7 6 2.0045 -1.1940 0.0005 8 1 3.0830 -1.1949 0.0590 9 6 1.2532 -2.4979 -0.0805 10 8 0.4996 -2.5744 -1.2922 11 6 0.3326 -2.6761 1.1486 12 6 0.4455 -4.1655 1.5230 13 7 1.3542 -4.7926 0.5388 14 6 2.1521 -5.8568 1.1625 15 6 1.2591 -7.0237 1.4970 16 6 0.9831 -8.0530 0.6957 17 7 0.1731 -8.9556 1.2198 18 6 -0.2548 -8.7307 2.4232 19 7 -1.1117 -9.5605 3.1293 20 6 -0.5174 -9.9625 4.4125 21 6 -1.5184 -10.8267 5.1839 22 8 -1.8866 -11.9519 4.3816 23 6 -2.4694 -11.5968 3.1248 24 6 -1.4785 -10.7401 2.3323 25 16 0.3922 -7.2618 3.0120 26 6 2.2250 -3.6989 0.0374 27 1 -0.4850 0.8401 0.0004 28 1 -0.2433 -1.9566 -1.3330 29 1 -0.6967 -2.4281 0.8894 30 1 0.6771 -2.0517 1.9729 31 1 0.8588 -4.2658 2.5266 32 1 -0.5364 -4.6362 1.4742 33 1 2.9297 -6.1808 0.4707 34 1 2.6124 -5.4783 2.0752 35 1 1.3912 -8.1433 -0.3001 36 1 0.3919 -10.5348 4.2290 37 1 -0.2774 -9.0742 4.9967 38 1 -2.4061 -10.2377 5.4141 39 1 -1.0617 -11.1743 6.1107 40 1 -3.3848 -11.0302 3.2952 41 1 -2.7005 -12.5010 2.5616 42 1 -1.9399 -10.4192 1.3984 43 1 -0.5846 -11.3250 2.1152 44 1 3.0198 -3.4819 0.7510 45 1 2.6432 -3.9556 -0.9359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:09 Heat of formation + Delta-G solvation = -23.023808 kcal Electronic energy + Delta-G solvation = -27202.223419 eV Core-core repulsion = 23347.068117 eV Total energy + Delta-G solvation = -3855.155302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59115 -39.21651 -38.32258 -36.12127 -34.82724 -32.14093 -31.76879 -31.49716 -29.15644 -28.14239 -27.66596 -25.35493 -24.63317 -24.17932 -23.17999 -21.37412 -20.43701 -19.67770 -19.27546 -18.28172 -16.97709 -16.83952 -16.46730 -15.75668 -15.51480 -15.42943 -15.17293 -15.08136 -14.92794 -14.54893 -14.33766 -14.00820 -13.61199 -13.41624 -13.09347 -12.78481 -12.37022 -12.22603 -11.96317 -11.85256 -11.73763 -11.38370 -11.27380 -11.14127 -11.07111 -10.92295 -10.67974 -10.50529 -10.42891 -10.33124 -9.88239 -9.79874 -9.67510 -9.24523 -9.15194 -8.60665 -8.23334 -8.07743 -7.80684 -6.20763 -4.28669 0.74244 1.12090 1.76170 2.78434 3.22453 3.23331 3.29214 3.31320 3.43190 4.24384 4.28976 4.45283 4.58370 4.65814 4.68506 4.75732 4.88386 4.98931 5.05344 5.08891 5.21396 5.27458 5.31932 5.48015 5.56291 5.64760 5.68419 5.83409 5.93407 5.96788 6.00296 6.13426 6.16343 6.41103 6.55239 6.56646 6.66596 6.85105 7.00765 7.31467 7.48202 7.49566 7.59752 7.73113 7.80562 8.18814 8.73134 9.40039 9.51053 10.86464 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030016 B = 0.002271 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.622214 B =12325.942176 C =12509.261273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.258 3.742 10 O -0.578 6.578 11 C -0.128 4.128 12 C 0.037 3.963 13 N -0.508 5.508 14 C 0.122 3.878 15 C -0.208 4.208 16 C 0.064 3.936 17 N -0.510 5.510 18 C 0.203 3.797 19 N -0.447 5.447 20 C 0.016 3.984 21 C 0.066 3.934 22 O -0.383 6.383 23 C 0.061 3.939 24 C 0.032 3.968 25 S 0.142 5.858 26 C 0.052 3.948 27 H 0.266 0.734 28 H 0.375 0.625 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.177 0.823 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -19.848 9.932 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.218 3.782 10 O -0.385 6.385 11 C -0.167 4.167 12 C -0.091 4.091 13 N -0.232 5.232 14 C -0.009 4.009 15 C -0.330 4.330 16 C -0.087 4.087 17 N -0.230 5.230 18 C -0.166 4.166 19 N -0.169 5.169 20 C -0.111 4.111 21 C -0.012 4.012 22 O -0.302 6.302 23 C -0.016 4.016 24 C -0.097 4.097 25 S 0.394 5.606 26 C -0.075 4.075 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.194 0.806 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.533 -20.338 10.246 22.913 hybrid contribution 1.282 1.654 -0.327 2.118 sum -1.251 -18.683 9.919 21.190 Atomic orbital electron populations 1.69775 1.05930 1.27375 1.50074 1.24988 0.94960 0.99364 0.93734 0.86515 0.79715 0.82747 0.78428 1.20360 1.21184 1.19937 1.21554 0.93624 0.90824 1.51566 0.92167 1.19315 0.87065 0.90328 0.81517 1.86165 1.47413 1.64168 1.40754 1.22958 1.01927 0.90996 1.00844 1.22958 0.96590 0.97207 0.92339 1.64861 1.17000 1.09582 1.31780 1.20601 0.92898 0.89202 0.98219 1.25695 1.07731 1.02991 0.96586 1.21378 0.96511 0.89888 1.00874 1.66775 1.14288 1.31639 1.10316 1.24866 0.98580 0.98514 0.94617 1.59341 1.35527 1.17473 1.04562 1.23114 0.97750 1.00884 0.89383 1.22686 0.97416 0.87472 0.93576 1.88009 1.81162 1.31133 1.29875 1.22797 0.95061 0.99411 0.84336 1.22767 1.00164 0.89499 0.97291 1.83854 1.42500 1.16784 1.17459 1.23229 0.94809 0.90466 0.98979 0.92411 0.77677 0.91449 0.91908 0.95497 0.91981 0.88927 0.93877 0.80647 0.92188 0.88740 0.91652 0.87551 0.91900 0.87651 0.88260 0.92001 0.93513 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.11 55.43 0.62 -23.16 16 2 C 0.07 1.90 5.31 -17.82 -0.09 1.81 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.21 8.13 -34.44 -0.28 -14.49 16 8 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 9 C 0.26 6.34 0.94 -89.91 -0.08 6.25 16 10 O -0.58 -15.14 13.10 -35.23 -0.46 -15.60 16 11 C -0.13 -2.95 5.22 -25.38 -0.13 -3.08 16 12 C 0.04 0.72 5.94 -2.76 -0.02 0.70 16 13 N -0.51 -9.67 5.26 -231.89 -1.22 -10.89 16 14 C 0.12 1.85 5.29 -4.97 -0.03 1.82 16 15 C -0.21 -3.00 5.61 -36.02 -0.20 -3.21 16 16 C 0.06 0.92 11.24 -19.14 -0.22 0.71 16 17 N -0.51 -7.41 9.52 -15.21 -0.14 -7.55 16 18 C 0.20 2.69 6.73 -87.68 -0.59 2.10 16 19 N -0.45 -4.98 4.79 -175.07 -0.84 -5.82 16 20 C 0.02 0.14 5.49 -3.71 -0.02 0.12 16 21 C 0.07 0.47 7.01 37.21 0.26 0.74 16 22 O -0.38 -3.50 10.83 -35.23 -0.38 -3.88 16 23 C 0.06 0.49 7.01 37.21 0.26 0.75 16 24 C 0.03 0.32 4.97 -3.71 -0.02 0.30 16 25 S 0.14 1.84 22.12 -107.50 -2.38 -0.54 16 26 C 0.05 1.10 5.67 -1.90 -0.01 1.09 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.37 9.85 7.56 45.56 0.34 10.19 16 29 H 0.07 1.63 7.86 -51.93 -0.41 1.23 16 30 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 31 H 0.03 0.48 7.57 -51.93 -0.39 0.09 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 34 H 0.04 0.63 7.82 -51.93 -0.41 0.23 16 35 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 1.06 8.01 -51.93 -0.42 0.64 16 43 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 44 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -29.58 371.58 -11.65 -41.23 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.25 Total: 9.51 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.17 Total: -4.40 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -1.59 Total: -47.42 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.84 Total: -19.49 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.38 Total: -0.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.58 -11.65 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.209 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds