Wall clock time and date at job start Tue Mar 31 2020 22:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99829 * 2 1 4 4 H 1.48499 * 109.46732 * 265.00676 * 3 2 1 5 5 H 1.48498 * 109.47189 * 25.00845 * 3 2 1 6 6 H 1.48504 * 109.46960 * 145.01110 * 3 2 1 7 7 C 1.37875 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 183.58463 * 7 2 1 9 9 C 1.50700 * 119.99804 * 3.58647 * 7 2 1 10 10 O 1.42899 * 110.78530 * 60.79472 * 9 7 2 11 11 C 1.54595 * 110.72642 * 297.54024 * 9 7 2 12 12 C 1.53988 * 105.13995 * 219.68889 * 11 9 7 13 13 N 1.47903 * 107.05887 * 358.77227 * 12 11 9 14 14 C 1.46905 * 110.99878 * 145.84548 * 13 12 11 15 15 C 1.50699 * 109.46891 * 69.87329 * 14 13 12 16 16 C 1.33334 * 125.94876 * 89.69357 * 15 14 13 17 17 N 1.32120 * 114.57610 * 179.82599 * 16 15 14 18 18 C 1.29686 * 116.86656 * 0.47574 * 17 16 15 19 19 N 1.38610 * 124.94864 * 179.74209 * 18 17 16 20 20 C 1.47010 * 111.00316 * 123.63409 * 19 18 17 21 21 C 1.53100 * 109.26104 * 177.60582 * 20 19 18 22 22 O 1.43018 * 109.25513 * 56.84895 * 21 20 19 23 23 C 1.43017 * 113.73983 * 301.32758 * 22 21 20 24 24 C 1.47018 * 111.00238 * 359.97438 * 19 18 17 25 25 S 1.70961 * 110.10303 * 359.73833 * 18 17 16 26 26 C 1.48528 * 105.82175 * 25.33397 * 13 12 11 27 27 H 0.97005 * 120.00121 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99860 * 291.40791 * 10 9 7 29 29 H 1.08994 * 110.30784 * 100.76654 * 11 9 7 30 30 H 1.09004 * 110.30211 * 338.59934 * 11 9 7 31 31 H 1.09005 * 109.91942 * 118.12823 * 12 11 9 32 32 H 1.08999 * 109.91896 * 239.42016 * 12 11 9 33 33 H 1.09001 * 109.46843 * 189.87562 * 14 13 12 34 34 H 1.08996 * 109.47281 * 309.87711 * 14 13 12 35 35 H 1.07998 * 122.71317 * 0.02562 * 16 15 14 36 36 H 1.09000 * 109.50534 * 297.53916 * 20 19 18 37 37 H 1.08996 * 109.50996 * 57.66669 * 20 19 18 38 38 H 1.08994 * 109.50603 * 296.91589 * 21 20 19 39 39 H 1.09006 * 109.54141 * 176.80234 * 21 20 19 40 40 H 1.08996 * 109.50312 * 298.74129 * 23 22 21 41 41 H 1.08999 * 109.54009 * 178.63271 * 23 22 21 42 42 H 1.09003 * 109.50372 * 302.33053 * 24 19 18 43 43 H 1.09006 * 109.50632 * 62.45768 * 24 19 18 44 44 H 1.08998 * 110.67132 * 79.22554 * 26 13 12 45 45 H 1.09000 * 110.66860 * 202.18942 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6021 1.9855 -1.3948 5 1 1.3978 2.6809 0.5919 6 1 3.4900 1.4730 0.8029 7 6 2.0045 -1.1940 0.0005 8 1 3.0830 -1.1949 0.0590 9 6 1.2532 -2.4979 -0.0805 10 8 0.4996 -2.5744 -1.2922 11 6 0.3326 -2.6761 1.1486 12 6 0.4455 -4.1655 1.5230 13 7 1.3542 -4.7926 0.5388 14 6 2.1521 -5.8568 1.1625 15 6 1.2591 -7.0237 1.4970 16 6 0.9831 -8.0530 0.6957 17 7 0.1731 -8.9556 1.2198 18 6 -0.2548 -8.7307 2.4232 19 7 -1.1117 -9.5605 3.1293 20 6 -0.5174 -9.9625 4.4125 21 6 -1.5184 -10.8267 5.1839 22 8 -1.8866 -11.9519 4.3816 23 6 -2.4694 -11.5968 3.1248 24 6 -1.4785 -10.7401 2.3323 25 16 0.3922 -7.2618 3.0120 26 6 2.2250 -3.6989 0.0374 27 1 -0.4850 0.8401 0.0004 28 1 -0.2433 -1.9566 -1.3330 29 1 -0.6967 -2.4281 0.8894 30 1 0.6771 -2.0517 1.9729 31 1 0.8588 -4.2658 2.5266 32 1 -0.5364 -4.6362 1.4742 33 1 2.9297 -6.1808 0.4707 34 1 2.6124 -5.4783 2.0752 35 1 1.3912 -8.1433 -0.3001 36 1 0.3919 -10.5348 4.2290 37 1 -0.2774 -9.0742 4.9967 38 1 -2.4061 -10.2377 5.4141 39 1 -1.0617 -11.1743 6.1107 40 1 -3.3848 -11.0302 3.2952 41 1 -2.7005 -12.5010 2.5616 42 1 -1.9399 -10.4192 1.3984 43 1 -0.5846 -11.3250 2.1152 44 1 3.0198 -3.4819 0.7510 45 1 2.6432 -3.9556 -0.9359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592521985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:08 Heat of formation + Delta-G solvation = -45.428707 kcal Electronic energy + Delta-G solvation = -27203.194968 eV Core-core repulsion = 23347.068117 eV Total energy + Delta-G solvation = -3856.126851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.46765 -40.31631 -39.75798 -37.11151 -36.42253 -34.17317 -32.97625 -32.36478 -30.45171 -29.82378 -28.81059 -26.81595 -25.58754 -25.36481 -24.37311 -22.31148 -21.77772 -21.43528 -20.36392 -19.35648 -18.88735 -17.77453 -17.18486 -17.07671 -16.86601 -16.48542 -16.23213 -16.16139 -16.05429 -15.98663 -15.64403 -15.26856 -14.87067 -14.68297 -14.59148 -14.07294 -13.77199 -13.43922 -13.28316 -13.19502 -12.94645 -12.80057 -12.64615 -12.51995 -12.45405 -12.29580 -12.20417 -12.10555 -11.79550 -11.61960 -11.29823 -11.07924 -10.74408 -10.64211 -10.58606 -10.27080 -10.04478 -9.35110 -9.15398 -8.19863 -6.34961 -0.30497 0.10544 0.70910 1.41029 1.43488 1.51360 1.74374 2.36106 2.39286 2.84021 3.04769 3.20410 3.42550 3.73915 3.76700 3.86450 3.96285 4.01032 4.04552 4.11761 4.19751 4.21499 4.26706 4.39463 4.41992 4.60678 4.63997 4.71015 4.71620 4.77442 4.81320 4.84418 4.89469 5.02041 5.08743 5.20614 5.35321 5.44025 5.57142 5.61499 5.74146 5.87852 6.06008 6.12809 6.26127 6.69405 6.70940 7.36631 7.45759 8.85674 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030016 B = 0.002271 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.622214 B =12325.942176 C =12509.261273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.057 0.943 9 C 0.239 3.761 10 O -0.588 6.588 11 C -0.120 4.120 12 C 0.051 3.949 13 N -0.517 5.517 14 C 0.125 3.875 15 C -0.228 4.228 16 C 0.063 3.937 17 N -0.532 5.532 18 C 0.204 3.796 19 N -0.453 5.453 20 C 0.015 3.985 21 C 0.066 3.934 22 O -0.397 6.397 23 C 0.066 3.934 24 C 0.035 3.965 25 S 0.160 5.840 26 C 0.061 3.939 27 H 0.267 0.733 28 H 0.369 0.631 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.185 0.815 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -20.844 11.253 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.199 3.801 10 O -0.395 6.395 11 C -0.159 4.159 12 C -0.077 4.077 13 N -0.241 5.241 14 C -0.005 4.005 15 C -0.350 4.350 16 C -0.089 4.089 17 N -0.253 5.253 18 C -0.164 4.164 19 N -0.175 5.175 20 C -0.112 4.112 21 C -0.011 4.011 22 O -0.316 6.316 23 C -0.011 4.011 24 C -0.094 4.094 25 S 0.413 5.587 26 C -0.066 4.066 27 H 0.076 0.924 28 H 0.217 0.783 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.202 0.798 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.147 -21.355 11.588 24.392 hybrid contribution 1.107 1.901 -0.710 2.312 sum -1.039 -19.454 10.879 22.313 Atomic orbital electron populations 1.69870 1.06898 1.27997 1.50234 1.25692 0.95773 1.02263 0.93423 0.85582 0.78705 0.79107 0.78253 1.20384 1.20799 1.19327 1.21853 0.93724 0.92164 1.52012 0.92462 1.19600 0.87813 0.91367 0.81319 1.86158 1.47364 1.63963 1.41997 1.22746 1.00116 0.93288 0.99713 1.22769 0.97053 0.94611 0.93307 1.64788 1.17330 1.09510 1.32485 1.20620 0.92929 0.88096 0.98855 1.25614 1.08751 1.03011 0.97610 1.21597 0.96196 0.89784 1.01279 1.66823 1.15218 1.32161 1.11106 1.25210 0.97879 0.98922 0.94431 1.59432 1.34942 1.17792 1.05347 1.23247 0.98027 1.01568 0.88332 1.22860 0.97417 0.86966 0.93858 1.87998 1.81250 1.32116 1.30214 1.22857 0.94344 0.99920 0.84007 1.22771 1.00176 0.89182 0.97313 1.83700 1.42056 1.16401 1.16515 1.23055 0.94362 0.89814 0.99379 0.92380 0.78347 0.93599 0.93446 0.93731 0.92062 0.87271 0.92892 0.79807 0.92575 0.87758 0.91023 0.85114 0.91352 0.85786 0.89272 0.93033 0.92575 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.08 11.11 21.45 0.24 -48.84 16 2 C 0.03 1.54 5.31 84.65 0.45 1.99 16 3 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.56 -29.72 8.13 25.60 0.21 -29.51 16 8 H 0.06 2.99 7.78 -2.91 -0.02 2.97 16 9 C 0.24 11.81 0.94 -10.33 -0.01 11.80 16 10 O -0.59 -31.34 13.10 -148.98 -1.95 -33.29 16 11 C -0.12 -5.55 5.22 31.47 0.16 -5.39 16 12 C 0.05 1.93 5.94 86.44 0.51 2.44 16 13 N -0.52 -19.07 5.26 -887.57 -4.66 -23.73 16 14 C 0.13 3.56 5.29 85.56 0.45 4.02 16 15 C -0.23 -6.24 5.61 24.58 0.14 -6.10 16 16 C 0.06 1.73 11.24 83.54 0.94 2.67 16 17 N -0.53 -15.03 9.52 -202.03 -1.92 -16.95 16 18 C 0.20 5.18 6.73 179.32 1.21 6.38 16 19 N -0.45 -9.49 4.79 -707.80 -3.39 -12.88 16 20 C 0.02 0.24 5.49 86.32 0.47 0.71 16 21 C 0.07 0.79 7.01 72.02 0.50 1.30 16 22 O -0.40 -6.43 10.83 -148.98 -1.61 -8.04 16 23 C 0.07 0.93 7.01 72.01 0.50 1.44 16 24 C 0.03 0.66 4.97 86.31 0.43 1.09 16 25 S 0.16 3.91 22.12 -56.49 -1.25 2.66 16 26 C 0.06 2.54 5.67 86.65 0.49 3.03 16 27 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 28 H 0.37 19.98 7.56 -74.06 -0.56 19.42 16 29 H 0.05 2.28 7.86 -2.39 -0.02 2.26 16 30 H 0.05 2.29 7.84 -2.38 -0.02 2.27 16 31 H 0.04 1.53 7.57 -2.38 -0.02 1.52 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.11 2.73 8.11 -2.39 -0.02 2.71 16 34 H 0.05 1.42 7.82 -2.39 -0.02 1.41 16 35 H 0.19 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.39 7.48 -2.39 -0.02 1.37 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 43 H 0.05 1.08 8.13 -2.38 -0.02 1.07 16 44 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 45 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -62.57 371.58 -5.62 -68.19 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.44 Total: 33.01 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 6.47 Total: -4.14 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -9.74 Total: -102.41 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -3.56 Total: -41.34 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.66 kcal Total: -62.57 -5.62 -68.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.766 kcal (2) G-P(sol) polarization free energy of solvation -62.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds