Wall clock time and date at job start Tue Mar 31 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48505 * 109.46911 * 240.00493 * 3 2 1 5 5 H 1.48505 * 109.46827 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47010 * 120.00049 * 3 2 1 7 7 C 1.37883 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00582 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99640 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.89027 * 303.88340 * 9 7 2 11 11 C 1.55156 * 111.00291 * 180.02562 * 9 7 2 12 12 C 1.54324 * 102.94148 * 206.38848 * 11 9 7 13 13 N 1.47018 * 107.27304 * 22.19157 * 12 11 9 14 14 C 1.34776 * 125.65342 * 181.02658 * 13 12 11 15 15 O 1.21565 * 120.00608 * 185.04678 * 14 13 12 16 16 C 1.47772 * 119.99599 * 5.04358 * 14 13 12 17 17 C 1.40123 * 120.46082 * 352.25131 * 16 14 13 18 18 C 1.38125 * 118.37641 * 179.75122 * 17 16 14 19 19 C 1.39455 * 119.21106 * 0.53139 * 18 17 16 20 20 C 1.48303 * 119.56983 * 179.72839 * 19 18 17 21 21 C 1.39330 * 119.72753 * 179.73023 * 20 19 18 22 22 C 1.38461 * 119.06863 * 180.25820 * 21 20 19 23 23 C 1.38735 * 118.49752 * 359.45327 * 22 21 20 24 24 C 1.38360 * 119.36336 * 0.54915 * 23 22 21 25 25 N 1.31672 * 120.89772 * 359.71832 * 24 23 22 26 26 N 1.32735 * 120.85907 * 359.45553 * 19 18 17 27 27 C 1.31511 * 121.77823 * 0.27399 * 26 19 18 28 28 C 1.47429 * 108.70293 * 1.28770 * 13 12 11 29 29 H 0.97002 * 119.99543 * 359.97438 * 1 2 3 30 30 H 0.96704 * 113.99990 * 56.11398 * 10 9 7 31 31 H 1.08997 * 110.72183 * 88.02346 * 11 9 7 32 32 H 1.09001 * 110.87113 * 324.81692 * 11 9 7 33 33 H 1.09004 * 109.88417 * 262.77594 * 12 11 9 34 34 H 1.08999 * 109.88505 * 141.60982 * 12 11 9 35 35 H 1.08000 * 120.81420 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.39720 * 180.26186 * 18 17 16 37 37 H 1.08001 * 120.46482 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.75447 * 179.72816 * 22 21 20 39 39 H 1.08004 * 120.32015 * 180.24421 * 23 22 21 40 40 H 1.08003 * 119.54705 * 179.69757 * 24 23 22 41 41 H 1.07998 * 119.64696 * 179.97438 * 27 26 19 42 42 H 1.09000 * 110.36409 * 94.48373 * 28 13 12 43 43 H 1.09004 * 110.36596 * 216.80327 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3521 -2.5685 1.1081 11 6 2.2274 -3.7051 -0.0005 12 6 1.3977 -4.8215 -0.6690 13 7 0.3463 -4.1685 -1.4625 14 6 -0.6004 -4.8007 -2.1839 15 8 -1.3660 -4.1594 -2.8770 16 6 -0.7077 -6.2736 -2.1324 17 6 0.2646 -7.0340 -1.4691 18 6 0.1190 -8.4073 -1.4431 19 6 -0.9761 -8.9878 -2.0823 20 6 -1.1370 -10.4620 -2.0644 21 6 -2.2329 -11.0451 -2.6972 22 6 -2.3725 -12.4223 -2.6675 23 6 -1.4044 -13.1719 -2.0152 24 6 -0.3417 -12.5266 -1.4079 25 7 -0.2360 -11.2147 -1.4465 26 7 -1.8792 -8.2377 -2.7018 27 6 -1.7793 -6.9271 -2.7444 28 6 0.5029 -2.7074 -1.3435 29 1 -0.4849 0.8401 0.0004 30 1 -0.2774 -1.8357 1.1505 31 1 2.4974 -3.9827 1.0183 32 1 3.1187 -3.4831 -0.5874 33 1 0.9463 -5.4555 0.0942 34 1 2.0362 -5.4188 -1.3199 35 1 1.1054 -6.5576 -0.9869 36 1 0.8469 -9.0245 -0.9375 37 1 -2.9656 -10.4311 -3.1997 38 1 -3.2137 -12.9025 -3.1452 39 1 -1.4820 -14.2485 -1.9774 40 1 0.4111 -13.1069 -0.8951 41 1 -2.5339 -6.3503 -3.2585 42 1 1.0939 -2.3204 -2.1736 43 1 -0.4729 -2.2225 -1.3129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593748312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:05 Heat of formation + Delta-G solvation = 16.568065 kcal Electronic energy + Delta-G solvation = -28161.015507 eV Core-core repulsion = 24172.133086 eV Total energy + Delta-G solvation = -3988.882421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93814 -40.09896 -38.87890 -37.20791 -34.65269 -33.24806 -32.98658 -32.20823 -32.16681 -30.46737 -29.85542 -28.08428 -25.85344 -24.95360 -24.19891 -23.22422 -22.78308 -21.75958 -19.90257 -19.53148 -17.90910 -17.34156 -17.01705 -16.78491 -16.21566 -15.77923 -15.37090 -15.20936 -15.13523 -14.74303 -14.66515 -14.43071 -14.02187 -13.68910 -13.61280 -13.30000 -13.19328 -13.05864 -12.78861 -12.57145 -12.12812 -11.89424 -11.60050 -11.41333 -11.06718 -10.79312 -10.70497 -10.55424 -10.32940 -10.25490 -10.12820 -10.01505 -9.84463 -9.74819 -9.44752 -9.30350 -8.73054 -8.65965 -8.46123 -7.90309 -6.34330 -4.44134 0.05691 0.94793 1.17981 1.24456 3.02522 3.18670 3.25191 3.26288 3.38097 3.53266 3.57389 3.99860 4.21808 4.30979 4.47636 4.55204 4.68973 4.75261 4.82366 4.87774 4.93140 5.01119 5.06738 5.22176 5.25125 5.45361 5.47174 5.65584 5.70895 5.75620 5.82211 5.88005 5.94183 6.01181 6.09304 6.33755 6.38912 6.49907 6.62590 6.75160 6.85336 7.16794 7.25478 7.55991 7.68763 7.75494 7.92082 8.05534 8.54526 8.60109 9.25633 9.39567 10.72998 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.002244 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.836522 B =12473.192867 C =13044.976403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.121 4.121 12 C 0.091 3.909 13 N -0.598 5.598 14 C 0.565 3.435 15 O -0.543 6.543 16 C -0.162 4.162 17 C -0.084 4.084 18 C -0.136 4.136 19 C 0.169 3.831 20 C 0.166 3.834 21 C -0.130 4.130 22 C -0.081 4.081 23 C -0.168 4.168 24 C 0.101 3.899 25 N -0.471 5.471 26 N -0.477 5.477 27 C 0.157 3.843 28 C 0.093 3.907 29 H 0.273 0.727 30 H 0.387 0.613 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.176 0.824 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.064 0.936 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -22.612 -3.169 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.159 4.159 12 C -0.032 4.032 13 N -0.329 5.329 14 C 0.353 3.647 15 O -0.423 6.423 16 C -0.167 4.167 17 C -0.109 4.109 18 C -0.157 4.157 19 C 0.033 3.967 20 C 0.030 3.970 21 C -0.150 4.150 22 C -0.107 4.107 23 C -0.188 4.188 24 C -0.058 4.058 25 N -0.180 5.180 26 N -0.186 5.186 27 C -0.003 4.003 28 C -0.028 4.028 29 H 0.083 0.917 30 H 0.239 0.761 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.190 0.810 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.043 -22.709 -3.446 22.993 hybrid contribution 0.064 1.293 -0.171 1.306 sum -0.979 -21.416 -3.617 21.741 Atomic orbital electron populations 1.69549 1.06047 1.28224 1.49555 1.25090 0.95056 0.99861 0.93227 0.86425 0.79509 0.81936 0.78837 1.19974 1.21047 1.19960 1.21446 0.93694 0.90002 1.52593 0.91423 1.19613 0.85708 0.91716 0.82015 1.86064 1.51108 1.53052 1.49191 1.22709 0.97953 0.94747 1.00463 1.22504 0.89747 0.96765 0.94150 1.48631 1.28400 1.09941 1.45949 1.17633 0.80803 0.86009 0.80249 1.90763 1.43067 1.67302 1.41137 1.21238 0.98211 0.95184 1.02080 1.23317 0.99252 0.93929 0.94409 1.22135 0.98776 0.95038 0.99740 1.19452 0.91505 0.91199 0.94558 1.19303 0.91471 0.91321 0.94896 1.22243 0.98573 0.95379 0.98830 1.21633 0.98559 0.93705 0.96779 1.22276 0.95813 1.01566 0.99188 1.22717 0.96907 0.89727 0.96463 1.67448 1.27418 1.07049 1.16123 1.67514 1.27230 1.06679 1.17186 1.22874 0.95381 0.88796 0.93253 1.23434 1.02833 0.75854 1.00712 0.91727 0.76062 0.90366 0.90170 0.91056 0.91636 0.80718 0.83178 0.83384 0.84445 0.84567 0.82255 0.80954 0.91742 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.31 10.72 55.43 0.59 -22.72 16 2 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 3 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.52 8.25 -34.44 -0.28 -13.80 16 8 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 9 C 0.25 5.82 0.89 -89.50 -0.08 5.74 16 10 O -0.58 -14.53 13.19 -35.23 -0.46 -15.00 16 11 C -0.12 -2.24 6.12 -24.90 -0.15 -2.39 16 12 C 0.09 1.48 4.87 -3.07 -0.01 1.47 16 13 N -0.60 -11.89 3.32 -172.41 -0.57 -12.46 16 14 C 0.57 11.20 7.81 -12.36 -0.10 11.10 16 15 O -0.54 -12.41 16.68 5.31 0.09 -12.32 16 16 C -0.16 -2.61 5.89 -104.77 -0.62 -3.23 16 17 C -0.08 -1.15 8.67 -38.92 -0.34 -1.49 16 18 C -0.14 -1.75 9.59 -39.17 -0.38 -2.12 16 19 C 0.17 2.29 6.73 -82.88 -0.56 1.74 16 20 C 0.17 2.01 6.72 -82.95 -0.56 1.45 16 21 C -0.13 -1.31 9.61 -39.09 -0.38 -1.69 16 22 C -0.08 -0.60 10.17 -39.32 -0.40 -1.00 16 23 C -0.17 -1.12 10.11 -39.35 -0.40 -1.52 16 24 C 0.10 0.82 11.18 -17.58 -0.20 0.62 16 25 N -0.47 -5.27 9.39 -9.78 -0.09 -5.37 16 26 N -0.48 -6.83 9.37 -9.45 -0.09 -6.92 16 27 C 0.16 2.38 10.76 -17.17 -0.18 2.20 16 28 C 0.09 2.15 5.63 -2.41 -0.01 2.13 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.39 10.05 6.93 45.56 0.32 10.36 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.38 8.02 -51.93 -0.42 0.96 16 33 H 0.07 1.08 6.67 -51.93 -0.35 0.74 16 34 H 0.07 0.87 6.79 -51.93 -0.35 0.52 16 35 H 0.18 2.15 2.92 -53.66 -0.16 2.00 16 36 H 0.15 1.67 7.51 -52.49 -0.39 1.27 16 37 H 0.15 1.45 7.52 -52.49 -0.39 1.06 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 40 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.17 2.49 7.67 -52.49 -0.40 2.08 16 42 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 43 H 0.08 2.21 7.69 -51.93 -0.40 1.81 16 LS Contribution 359.99 15.07 5.42 5.42 Total: -1.00 -30.27 359.99 -9.07 -39.34 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.20 Total: 14.25 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.74 Total: 0.90 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.16 Total: -47.47 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.38 Total: -27.32 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.27 -9.07 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593748312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.908 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds