Wall clock time and date at job start Tue Mar 31 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48505 * 109.46911 * 240.00493 * 3 2 1 5 5 H 1.48505 * 109.46827 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47010 * 120.00049 * 3 2 1 7 7 C 1.37883 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00582 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99640 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.89027 * 303.88340 * 9 7 2 11 11 C 1.55156 * 111.00291 * 180.02562 * 9 7 2 12 12 C 1.54324 * 102.94148 * 206.38848 * 11 9 7 13 13 N 1.47018 * 107.27304 * 22.19157 * 12 11 9 14 14 C 1.34776 * 125.65342 * 181.02658 * 13 12 11 15 15 O 1.21565 * 120.00608 * 185.04678 * 14 13 12 16 16 C 1.47772 * 119.99599 * 5.04358 * 14 13 12 17 17 C 1.40123 * 120.46082 * 352.25131 * 16 14 13 18 18 C 1.38125 * 118.37641 * 179.75122 * 17 16 14 19 19 C 1.39455 * 119.21106 * 0.53139 * 18 17 16 20 20 C 1.48303 * 119.56983 * 179.72839 * 19 18 17 21 21 C 1.39330 * 119.72753 * 179.73023 * 20 19 18 22 22 C 1.38461 * 119.06863 * 180.25820 * 21 20 19 23 23 C 1.38735 * 118.49752 * 359.45327 * 22 21 20 24 24 C 1.38360 * 119.36336 * 0.54915 * 23 22 21 25 25 N 1.31672 * 120.89772 * 359.71832 * 24 23 22 26 26 N 1.32735 * 120.85907 * 359.45553 * 19 18 17 27 27 C 1.31511 * 121.77823 * 0.27399 * 26 19 18 28 28 C 1.47429 * 108.70293 * 1.28770 * 13 12 11 29 29 H 0.97002 * 119.99543 * 359.97438 * 1 2 3 30 30 H 0.96704 * 113.99990 * 56.11398 * 10 9 7 31 31 H 1.08997 * 110.72183 * 88.02346 * 11 9 7 32 32 H 1.09001 * 110.87113 * 324.81692 * 11 9 7 33 33 H 1.09004 * 109.88417 * 262.77594 * 12 11 9 34 34 H 1.08999 * 109.88505 * 141.60982 * 12 11 9 35 35 H 1.08000 * 120.81420 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.39720 * 180.26186 * 18 17 16 37 37 H 1.08001 * 120.46482 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.75447 * 179.72816 * 22 21 20 39 39 H 1.08004 * 120.32015 * 180.24421 * 23 22 21 40 40 H 1.08003 * 119.54705 * 179.69757 * 24 23 22 41 41 H 1.07998 * 119.64696 * 179.97438 * 27 26 19 42 42 H 1.09000 * 110.36409 * 94.48373 * 28 13 12 43 43 H 1.09004 * 110.36596 * 216.80327 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3521 -2.5685 1.1081 11 6 2.2274 -3.7051 -0.0005 12 6 1.3977 -4.8215 -0.6690 13 7 0.3463 -4.1685 -1.4625 14 6 -0.6004 -4.8007 -2.1839 15 8 -1.3660 -4.1594 -2.8770 16 6 -0.7077 -6.2736 -2.1324 17 6 0.2646 -7.0340 -1.4691 18 6 0.1190 -8.4073 -1.4431 19 6 -0.9761 -8.9878 -2.0823 20 6 -1.1370 -10.4620 -2.0644 21 6 -2.2329 -11.0451 -2.6972 22 6 -2.3725 -12.4223 -2.6675 23 6 -1.4044 -13.1719 -2.0152 24 6 -0.3417 -12.5266 -1.4079 25 7 -0.2360 -11.2147 -1.4465 26 7 -1.8792 -8.2377 -2.7018 27 6 -1.7793 -6.9271 -2.7444 28 6 0.5029 -2.7074 -1.3435 29 1 -0.4849 0.8401 0.0004 30 1 -0.2774 -1.8357 1.1505 31 1 2.4974 -3.9827 1.0183 32 1 3.1187 -3.4831 -0.5874 33 1 0.9463 -5.4555 0.0942 34 1 2.0362 -5.4188 -1.3199 35 1 1.1054 -6.5576 -0.9869 36 1 0.8469 -9.0245 -0.9375 37 1 -2.9656 -10.4311 -3.1997 38 1 -3.2137 -12.9025 -3.1452 39 1 -1.4820 -14.2485 -1.9774 40 1 0.4111 -13.1069 -0.8951 41 1 -2.5339 -6.3503 -3.2585 42 1 1.0939 -2.3204 -2.1736 43 1 -0.4729 -2.2225 -1.3129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593748312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:05 Heat of formation + Delta-G solvation = -4.138181 kcal Electronic energy + Delta-G solvation = -28161.913397 eV Core-core repulsion = 24172.133086 eV Total energy + Delta-G solvation = -3989.780311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03478 -41.11108 -40.13688 -38.87096 -36.35922 -34.25655 -34.15413 -33.88912 -33.03631 -31.93363 -30.92010 -29.72880 -27.40521 -26.24654 -25.13117 -24.46888 -23.71008 -22.80888 -21.53711 -21.06597 -19.20344 -18.74359 -18.36131 -17.84699 -17.17286 -16.99688 -16.86755 -16.60233 -16.40464 -16.13390 -15.72996 -15.62002 -15.11563 -14.97900 -14.80053 -14.76991 -14.41795 -14.26650 -14.03644 -13.88999 -13.47193 -13.32915 -13.16768 -12.81578 -12.65911 -12.35076 -12.33063 -12.22103 -12.10837 -11.39983 -11.20512 -11.15623 -10.93886 -10.82132 -10.73780 -10.63126 -10.37623 -10.31386 -9.67626 -9.44181 -8.26421 -6.43088 -0.91894 0.10206 0.29935 0.40273 1.44040 1.44786 1.52764 1.71540 1.93260 2.38297 2.57845 2.60255 2.99813 3.03394 3.34785 3.45752 3.66865 3.73563 3.77569 3.91155 4.01381 4.06033 4.09902 4.16984 4.22851 4.27270 4.31602 4.46333 4.53676 4.66509 4.70191 4.85830 4.89022 4.92708 4.99425 5.04984 5.16586 5.22690 5.25939 5.36289 5.43735 5.47023 5.73781 5.75742 6.02620 6.48234 6.63019 6.66234 6.93070 7.00009 7.29407 7.38033 8.79012 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.002244 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.836522 B =12473.192867 C =13044.976403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.115 4.115 12 C 0.090 3.910 13 N -0.603 5.603 14 C 0.562 3.438 15 O -0.588 6.588 16 C -0.183 4.183 17 C -0.070 4.070 18 C -0.135 4.135 19 C 0.171 3.829 20 C 0.131 3.869 21 C -0.141 4.141 22 C -0.081 4.081 23 C -0.151 4.151 24 C 0.091 3.909 25 N -0.490 5.490 26 N -0.484 5.484 27 C 0.154 3.846 28 C 0.105 3.895 29 H 0.270 0.730 30 H 0.377 0.623 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.193 0.807 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.175 0.825 40 H 0.190 0.810 41 H 0.169 0.831 42 H 0.051 0.949 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -26.350 -2.676 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.091 0.909 9 C 0.192 3.808 10 O -0.399 6.399 11 C -0.152 4.152 12 C -0.031 4.031 13 N -0.333 5.333 14 C 0.352 3.648 15 O -0.470 6.470 16 C -0.188 4.188 17 C -0.095 4.095 18 C -0.155 4.155 19 C 0.035 3.965 20 C -0.004 4.004 21 C -0.162 4.162 22 C -0.107 4.107 23 C -0.171 4.171 24 C -0.068 4.068 25 N -0.200 5.200 26 N -0.193 5.193 27 C -0.005 4.005 28 C -0.018 4.018 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.209 0.791 36 H 0.189 0.811 37 H 0.159 0.841 38 H 0.185 0.815 39 H 0.192 0.808 40 H 0.207 0.793 41 H 0.187 0.813 42 H 0.069 0.931 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.630 -26.474 -2.942 26.644 hybrid contribution -0.485 2.204 -0.327 2.281 sum 0.145 -24.269 -3.269 24.489 Atomic orbital electron populations 1.69673 1.07248 1.28591 1.50355 1.25851 0.95740 1.02954 0.93096 0.85492 0.78254 0.78228 0.78972 1.19491 1.21335 1.19334 1.21814 0.94143 0.91076 1.52225 0.90883 1.19887 0.86210 0.93444 0.81269 1.86054 1.51222 1.52568 1.50064 1.22722 0.97518 0.93083 1.01908 1.22787 0.89124 0.96338 0.94898 1.48648 1.29485 1.08714 1.46464 1.18195 0.79864 0.87500 0.79238 1.90723 1.44635 1.68642 1.43032 1.20909 1.00184 0.92764 1.04988 1.23411 0.98678 0.94127 0.93285 1.22331 0.98947 0.94651 0.99534 1.19950 0.91022 0.92471 0.93087 1.19244 0.93164 0.90560 0.97422 1.22334 0.98060 0.96868 0.98889 1.22024 0.99643 0.92581 0.96421 1.22735 0.94212 1.03417 0.96698 1.23350 0.98097 0.88933 0.96402 1.67397 1.27544 1.08535 1.16512 1.67575 1.27840 1.06031 1.17894 1.22863 0.95226 0.89302 0.93158 1.23003 1.00218 0.77982 1.00573 0.92012 0.77181 0.89071 0.88685 0.89356 0.87462 0.79105 0.81080 0.84053 0.81542 0.80767 0.79308 0.81348 0.93063 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 10.72 21.45 0.23 -49.49 16 2 C 0.02 1.24 5.30 84.66 0.45 1.69 16 3 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.55 -28.03 8.25 25.60 0.21 -27.82 16 8 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16 9 C 0.23 10.93 0.89 -10.07 -0.01 10.92 16 10 O -0.59 -30.04 13.19 -148.98 -1.97 -32.00 16 11 C -0.11 -4.05 6.12 31.78 0.19 -3.85 16 12 C 0.09 2.74 4.87 86.73 0.42 3.16 16 13 N -0.60 -24.26 3.32 -817.66 -2.72 -26.98 16 14 C 0.56 23.01 7.81 86.76 0.68 23.69 16 15 O -0.59 -28.52 16.68 -3.92 -0.07 -28.58 16 16 C -0.18 -5.95 5.89 -19.96 -0.12 -6.07 16 17 C -0.07 -1.81 8.67 22.70 0.20 -1.61 16 18 C -0.13 -3.20 9.59 22.54 0.22 -2.98 16 19 C 0.17 4.50 6.73 41.98 0.28 4.78 16 20 C 0.13 2.98 6.72 41.96 0.28 3.27 16 21 C -0.14 -2.64 9.61 22.59 0.22 -2.43 16 22 C -0.08 -0.95 10.17 22.44 0.23 -0.72 16 23 C -0.15 -1.36 10.11 22.42 0.23 -1.13 16 24 C 0.09 1.15 11.18 84.75 0.95 2.10 16 25 N -0.49 -9.80 9.39 -184.85 -1.73 -11.53 16 26 N -0.48 -13.95 9.37 -183.82 -1.72 -15.67 16 27 C 0.15 4.82 10.76 85.08 0.92 5.74 16 28 C 0.11 5.06 5.63 86.93 0.49 5.55 16 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.38 20.49 6.93 -74.05 -0.51 19.98 16 31 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.09 3.05 8.02 -2.39 -0.02 3.03 16 33 H 0.09 2.44 6.67 -2.38 -0.02 2.43 16 34 H 0.11 2.45 6.79 -2.39 -0.02 2.43 16 35 H 0.19 4.13 2.92 -4.01 -0.01 4.12 16 36 H 0.17 3.33 7.51 -2.91 -0.02 3.30 16 37 H 0.14 2.73 7.52 -2.91 -0.02 2.71 16 38 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 40 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.17 5.22 7.67 -2.91 -0.02 5.20 16 42 H 0.05 2.54 8.04 -2.39 -0.02 2.52 16 43 H 0.04 2.37 7.69 -2.38 -0.02 2.36 16 Total: -1.00 -69.67 359.99 0.44 -69.23 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.56 Total: 37.54 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.83 Total: 14.28 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -5.95 Total: -103.68 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -2.03 Total: -60.59 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -69.67 0.44 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593748312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.096 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds