Wall clock time and date at job start Tue Mar 31 2020 22:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48502 * 109.47014 * 264.82825 * 3 2 1 5 5 H 1.48500 * 109.47116 * 24.82719 * 3 2 1 6 6 H 1.48502 * 109.47188 * 144.82663 * 3 2 1 7 7 C 1.37875 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99655 * 3.77244 * 7 2 1 9 9 C 1.50703 * 120.00411 * 183.77702 * 7 2 1 10 10 O 1.42902 * 110.64056 * 61.95224 * 9 7 2 11 11 C 1.55157 * 110.71849 * 185.09476 * 9 7 2 12 12 C 1.54906 * 101.57904 * 153.86497 * 11 9 7 13 13 N 1.47422 * 104.83510 * 322.98673 * 12 11 9 14 14 C 1.34772 * 125.65297 * 204.09595 * 13 12 11 15 15 O 1.21282 * 120.00180 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99752 * 0.02562 * 14 13 12 17 17 C 1.52995 * 109.46912 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46941 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.47024 * 180.02562 * 18 17 16 20 20 C 1.38424 * 120.02696 * 89.99930 * 19 18 17 21 21 F 1.35099 * 120.00822 * 0.04779 * 20 19 18 22 22 C 1.38473 * 119.97593 * 180.02562 * 20 19 18 23 23 C 1.38210 * 120.02432 * 0.02562 * 22 20 19 24 24 C 1.38214 * 120.04977 * 0.27017 * 23 22 20 25 25 C 1.38418 * 120.02543 * 270.02121 * 19 18 17 26 26 F 1.35106 * 120.01115 * 0.02562 * 25 19 18 27 27 C 1.47027 * 108.70031 * 24.35808 * 13 12 11 28 28 H 0.97006 * 119.99775 * 0.02562 * 1 2 3 29 29 H 0.96694 * 113.99791 * 61.68476 * 10 9 7 30 30 H 1.08993 * 111.01075 * 35.78377 * 11 9 7 31 31 H 1.09007 * 111.03499 * 271.94987 * 11 9 7 32 32 H 1.09002 * 110.36367 * 204.14695 * 12 11 9 33 33 H 1.09005 * 110.37104 * 81.83003 * 12 11 9 34 34 H 1.08998 * 109.46599 * 60.00215 * 16 14 13 35 35 H 1.08996 * 109.47153 * 299.99966 * 16 14 13 36 36 H 1.09002 * 109.47232 * 60.00236 * 17 16 14 37 37 H 1.09005 * 109.47842 * 300.00317 * 17 16 14 38 38 H 1.09000 * 109.47303 * 60.00485 * 18 17 16 39 39 H 1.08996 * 109.47149 * 300.00159 * 18 17 16 40 40 H 1.07992 * 119.98670 * 179.97438 * 22 20 19 41 41 H 1.07999 * 119.97784 * 179.97438 * 23 22 20 42 42 H 1.07999 * 119.98506 * 179.70006 * 24 23 22 43 43 H 1.08996 * 109.88214 * 118.13448 * 27 13 12 44 44 H 1.09004 * 109.88337 * 239.30041 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6060 1.9833 -1.3944 5 1 1.3963 2.6818 0.5879 6 1 3.4878 1.4741 0.8065 7 6 2.0045 -1.1940 0.0005 8 1 1.4662 -2.1283 -0.0606 9 6 3.5091 -1.1955 0.0865 10 8 3.9441 -0.6058 1.3134 11 6 4.0658 -2.6365 -0.0577 12 6 5.4846 -2.3671 -0.6181 13 7 5.3187 -1.2212 -1.5306 14 6 6.1271 -0.9176 -2.5654 15 8 5.8937 0.0543 -3.2523 16 6 7.3209 -1.7858 -2.8689 17 6 8.0638 -1.2250 -4.0831 18 6 9.2762 -2.1061 -4.3908 19 6 10.0084 -1.5533 -5.5864 20 6 11.0195 -0.6243 -5.4109 21 9 11.3510 -0.2134 -4.1674 22 6 11.6911 -0.1167 -6.5103 23 6 11.3520 -0.5369 -7.7825 24 6 10.3386 -1.4599 -7.9594 25 6 9.6701 -1.9738 -6.8611 26 9 8.6828 -2.8798 -7.0339 27 6 4.1289 -0.4608 -1.1209 28 1 -0.4850 0.8401 -0.0004 29 1 3.6446 -1.0758 2.1035 30 1 3.4707 -3.2165 -0.7630 31 1 4.1162 -3.1352 0.9102 32 1 5.8482 -3.2375 -1.1643 33 1 6.1698 -2.1122 0.1904 34 1 6.9866 -2.8006 -3.0847 35 1 7.9890 -1.7988 -2.0078 36 1 8.3981 -0.2101 -3.8676 37 1 7.3955 -1.2123 -4.9441 38 1 8.9425 -3.1211 -4.6061 39 1 9.9444 -2.1183 -3.5298 40 1 12.4797 0.6084 -6.3735 41 1 11.8761 -0.1402 -8.6395 42 1 10.0712 -1.7838 -8.9544 43 1 4.4161 0.5509 -0.8343 44 1 3.4107 -0.4264 -1.9402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594374503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:11 Heat of formation + Delta-G solvation = -151.630843 kcal Electronic energy + Delta-G solvation = -29050.489243 eV Core-core repulsion = 24603.623984 eV Total energy + Delta-G solvation = -4446.865259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.30874 -49.29956 -39.74613 -39.25305 -37.65995 -35.21706 -34.54269 -32.44114 -31.66206 -30.67421 -30.14930 -28.73287 -27.33711 -24.96622 -23.24346 -23.24113 -22.52481 -21.31060 -19.78919 -18.95225 -18.47834 -17.71567 -17.25014 -16.85716 -16.41297 -16.12934 -15.99965 -15.89965 -15.58047 -15.42018 -14.80082 -14.74589 -14.66027 -14.31853 -13.96204 -13.67900 -13.12582 -13.10006 -12.81576 -12.73534 -12.61701 -12.36849 -12.22048 -12.03737 -11.91662 -11.75298 -11.66170 -11.41837 -11.26619 -10.94305 -10.80500 -10.64114 -10.29814 -10.15446 -9.49638 -9.21176 -9.14321 -9.06806 -8.74248 -8.47891 -8.12051 -6.23374 -4.35922 0.57423 0.58024 2.94584 2.99857 3.31059 3.41147 3.51047 3.52483 3.63124 4.02852 4.11310 4.26842 4.40278 4.42667 4.67605 4.74006 4.89669 4.99845 5.07030 5.15078 5.18045 5.25448 5.31165 5.41460 5.50653 5.52106 5.56546 5.56884 5.62896 5.66002 5.70093 5.73919 5.97806 6.05718 6.08778 6.20156 6.38212 6.47293 6.53669 6.62719 6.75470 7.04090 7.47315 7.99195 8.17898 8.55353 8.71399 8.88113 9.39975 10.86673 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002337 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.350481 B =11976.093873 C =12037.730850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.090 3.910 3 Si 0.864 3.136 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.228 1.228 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.215 3.785 10 O -0.573 6.573 11 C -0.146 4.146 12 C 0.101 3.899 13 N -0.612 5.612 14 C 0.520 3.480 15 O -0.550 6.550 16 C -0.133 4.133 17 C -0.097 4.097 18 C -0.082 4.082 19 C -0.149 4.149 20 C 0.131 3.869 21 F -0.127 7.127 22 C -0.164 4.164 23 C -0.068 4.068 24 C -0.163 4.163 25 C 0.132 3.868 26 F -0.127 7.127 27 C 0.111 3.889 28 H 0.268 0.732 29 H 0.365 0.635 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.060 0.940 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.488 -6.354 -11.603 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.691 3.309 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.151 1.151 7 C -0.589 4.589 8 H 0.099 0.901 9 C 0.174 3.826 10 O -0.380 6.380 11 C -0.184 4.184 12 C -0.022 4.022 13 N -0.345 5.345 14 C 0.308 3.692 15 O -0.428 6.428 16 C -0.173 4.173 17 C -0.135 4.135 18 C -0.119 4.119 19 C -0.150 4.150 20 C 0.112 3.888 21 F -0.106 7.106 22 C -0.182 4.182 23 C -0.086 4.086 24 C -0.182 4.182 25 C 0.112 3.888 26 F -0.105 7.105 27 C -0.010 4.010 28 H 0.077 0.923 29 H 0.212 0.788 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.078 0.922 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.498 -5.313 -12.392 27.963 hybrid contribution -0.156 0.384 0.513 0.660 sum 24.342 -4.929 -11.879 27.531 Atomic orbital electron populations 1.69916 1.06606 1.27706 1.47823 1.24972 0.94627 0.99638 0.92320 0.87223 0.81840 0.82445 0.79431 1.20475 1.22233 1.15109 1.21196 0.88171 0.95122 1.54407 0.90128 1.19981 0.93498 0.87174 0.81899 1.86517 1.78546 1.57039 1.15898 1.23328 0.93954 0.99909 1.01220 1.22348 0.99176 0.88048 0.92632 1.48702 1.27846 1.28663 1.29336 1.20267 0.83657 0.85779 0.79486 1.90687 1.73536 1.29296 1.49303 1.21616 0.95733 1.00031 0.99929 1.21288 0.95181 0.99237 0.97797 1.20553 0.96933 0.99942 0.94479 1.19931 0.99157 1.00431 0.95521 1.17227 0.95632 0.95819 0.80158 1.91536 1.91330 1.88631 1.39074 1.21227 1.02398 1.02947 0.91672 1.20841 0.95632 0.95263 0.96847 1.21234 0.98275 1.00064 0.98644 1.17228 0.88262 0.90489 0.92816 1.91542 1.58840 1.64141 1.96002 1.22585 0.85491 0.95231 0.97711 0.92265 0.78760 0.90208 0.90553 0.91493 0.91589 0.88921 0.89009 0.90912 0.90821 0.89845 0.89891 0.84010 0.83941 0.83984 0.92219 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.45 13.96 55.43 0.77 -25.68 16 2 C 0.09 2.55 5.47 -17.82 -0.10 2.46 16 3 Si 0.86 22.16 23.99 -169.99 -4.08 18.08 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 6 H -0.23 -5.74 5.40 56.52 0.30 -5.44 16 7 C -0.55 -14.70 8.72 -34.44 -0.30 -15.00 16 8 H 0.08 2.29 8.03 -52.49 -0.42 1.87 16 9 C 0.21 4.78 0.68 -89.93 -0.06 4.72 16 10 O -0.57 -12.39 10.47 -35.23 -0.37 -12.76 16 11 C -0.15 -2.56 6.22 -24.58 -0.15 -2.72 16 12 C 0.10 1.55 6.68 -2.53 -0.02 1.54 16 13 N -0.61 -11.78 3.33 -170.51 -0.57 -12.35 16 14 C 0.52 9.62 7.85 -10.98 -0.09 9.54 16 15 O -0.55 -12.38 16.31 5.56 0.09 -12.29 16 16 C -0.13 -1.69 4.71 -27.88 -0.13 -1.83 16 17 C -0.10 -1.22 4.49 -26.73 -0.12 -1.34 16 18 C -0.08 -0.81 4.99 -27.88 -0.14 -0.95 16 19 C -0.15 -1.49 5.15 -104.48 -0.54 -2.03 16 20 C 0.13 1.26 7.24 -39.43 -0.29 0.97 16 21 F -0.13 -1.36 16.48 2.25 0.04 -1.32 16 22 C -0.16 -1.19 10.03 -39.50 -0.40 -1.59 16 23 C -0.07 -0.41 10.04 -39.60 -0.40 -0.81 16 24 C -0.16 -1.19 10.03 -39.50 -0.40 -1.59 16 25 C 0.13 1.27 7.24 -39.43 -0.29 0.98 16 26 F -0.13 -1.36 16.48 2.25 0.04 -1.32 16 27 C 0.11 2.58 4.39 -3.06 -0.01 2.57 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.37 6.61 9.10 45.56 0.41 7.02 16 30 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.99 7.85 -51.93 -0.41 0.58 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.08 0.75 7.64 -51.93 -0.40 0.35 16 39 H 0.08 0.74 7.64 -51.93 -0.40 0.35 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.06 1.49 5.70 -51.93 -0.30 1.19 16 44 H 0.08 2.09 7.62 -51.93 -0.40 1.69 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -33.98 366.73 -7.28 -41.26 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.31 Total: 5.90 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.42 Total: -5.06 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.21 Total: -38.03 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.28 Total: -25.04 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.07 Total: -2.65 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.08 Total: 18.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.98 -7.28 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594374503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.372 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds