Wall clock time and date at job start Tue Mar 31 2020 22:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48501 * 109.47237 * 240.00203 * 3 2 1 5 5 H 1.48504 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47354 * 120.00005 * 3 2 1 7 7 C 1.37875 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99575 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46971 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.46987 * 180.02562 * 10 9 7 12 12 O 1.42108 * 110.54477 * 68.37453 * 11 10 9 13 13 O 1.42094 * 110.54541 * 291.62088 * 11 10 9 14 14 N 1.65605 * 104.44690 * 179.97438 * 11 10 9 15 15 C 1.46501 * 119.99758 * 65.00267 * 14 11 10 16 16 C 1.50702 * 109.46913 * 164.99790 * 15 14 11 17 17 C 1.38340 * 120.44760 * 257.20438 * 16 15 14 18 18 C 1.38844 * 118.50106 * 180.02562 * 17 16 15 19 19 C 1.38069 * 119.33043 * 0.27624 * 18 17 16 20 20 N 1.31943 * 120.85012 * 359.42752 * 19 18 17 21 21 C 1.32431 * 121.62399 * 0.58416 * 20 19 18 22 22 N 1.39000 * 119.70054 * 179.68149 * 21 20 19 23 23 C 1.48530 * 111.00419 * 279.54399 * 22 21 20 24 24 C 1.54934 * 103.23047 * 159.72328 * 23 22 21 25 25 C 1.54594 * 102.92194 * 322.59034 * 24 23 22 26 26 C 1.47896 * 111.00550 * 36.94607 * 22 21 20 27 27 H 0.97005 * 120.00338 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47082 * 60.00566 * 9 7 2 29 29 H 1.08997 * 109.47681 * 300.00024 * 9 7 2 30 30 H 1.08999 * 109.46814 * 59.99719 * 10 9 7 31 31 H 1.08998 * 109.46534 * 299.99790 * 10 9 7 32 32 H 0.97002 * 120.00147 * 245.00110 * 14 11 10 33 33 H 1.09003 * 109.46744 * 44.99836 * 15 14 11 34 34 H 1.08996 * 109.46732 * 284.99974 * 15 14 11 35 35 H 1.07995 * 120.75249 * 0.04602 * 17 16 15 36 36 H 1.08006 * 120.33212 * 180.02562 * 18 17 16 37 37 H 1.07994 * 119.57179 * 179.72577 * 19 18 17 38 38 H 1.08995 * 110.67149 * 278.16393 * 23 22 21 39 39 H 1.09001 * 110.66714 * 41.29009 * 23 22 21 40 40 H 1.09001 * 110.73030 * 204.23264 * 24 23 22 41 41 H 1.08999 * 110.87506 * 81.01643 * 24 23 22 42 42 H 1.09000 * 110.31097 * 263.03737 * 25 24 23 43 43 H 1.09000 * 110.30850 * 140.87142 * 25 24 23 44 44 H 1.09000 * 109.91539 * 333.50649 * 26 22 21 45 45 H 1.09000 * 109.91813 * 94.79573 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2329 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6641 -5.4201 1.2354 14 7 2.5207 -6.3926 -0.0020 15 6 3.4191 -6.5233 1.1479 16 6 4.1392 -7.8451 1.0749 17 6 3.7469 -8.9023 1.8763 18 6 4.4390 -10.1018 1.7765 19 6 5.4941 -10.2022 0.8916 20 7 5.8427 -9.1788 0.1354 21 6 5.2076 -8.0185 0.2014 22 7 5.6127 -6.9646 -0.6093 23 6 6.7968 -6.2759 -0.0350 24 6 7.4037 -5.5377 -1.2545 25 6 7.1855 -6.5414 -2.4099 26 6 6.0357 -7.4516 -1.9402 27 1 -0.4851 0.8401 0.0004 28 1 0.6242 -2.5566 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 2.6184 -6.9853 -0.7636 33 1 2.8389 -6.4759 2.0694 34 1 4.1467 -5.7119 1.1344 35 1 2.9206 -8.7972 2.5638 36 1 4.1575 -10.9465 2.3879 37 1 6.0380 -11.1320 0.8141 38 1 6.4933 -5.5648 0.7332 39 1 7.5051 -6.9999 0.3678 40 1 8.4666 -5.3500 -1.1022 41 1 6.8727 -4.6056 -1.4480 42 1 8.0887 -7.1284 -2.5767 43 1 6.9026 -6.0140 -3.3209 44 1 6.3844 -8.4816 -1.8650 45 1 5.2027 -7.3890 -2.6404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594803535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:12 Heat of formation + Delta-G solvation = -30.033561 kcal Electronic energy + Delta-G solvation = -27712.904635 eV Core-core repulsion = 23857.445368 eV Total energy + Delta-G solvation = -3855.459268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08769 -38.44227 -36.55153 -35.68336 -35.33013 -33.84597 -33.13622 -32.08816 -31.11177 -29.41430 -29.11524 -25.97785 -25.54888 -23.97756 -22.24442 -21.60447 -21.34958 -20.97801 -18.85183 -17.80614 -17.43271 -17.13264 -16.68329 -16.13797 -15.70385 -15.45718 -15.35209 -14.76116 -14.68827 -14.50653 -14.23258 -13.89347 -13.51336 -13.29164 -13.26819 -13.06439 -12.63273 -12.46878 -12.30872 -12.21402 -11.70231 -11.56248 -11.53252 -11.44746 -11.44339 -11.36633 -11.03884 -10.92700 -10.75518 -10.40723 -10.32689 -10.09361 -9.98506 -9.75049 -9.43996 -9.32470 -8.94744 -8.63689 -8.47042 -6.09253 -4.14536 0.65089 0.87095 1.04486 3.19254 3.28974 3.33797 3.35499 3.41267 3.52731 4.09242 4.30142 4.39301 4.42443 4.56143 4.57092 4.62844 4.73190 4.79248 4.83993 5.02017 5.10662 5.16792 5.25870 5.27362 5.32753 5.49079 5.55787 5.61773 5.63348 5.71654 5.74957 5.79778 5.80672 5.87924 5.98554 6.00004 6.05863 6.21860 6.43418 6.55880 6.99405 7.19959 7.34718 7.41257 7.62427 7.83795 8.21529 8.88745 9.49875 11.01801 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003376 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.475566 B = 8292.966411 C = 9705.025058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.587 4.587 11 S 2.594 3.406 12 O -0.968 6.968 13 O -0.970 6.970 14 N -1.115 6.115 15 C 0.175 3.825 16 C -0.121 4.121 17 C -0.052 4.052 18 C -0.182 4.182 19 C 0.113 3.887 20 N -0.515 5.515 21 C 0.302 3.698 22 N -0.463 5.463 23 C 0.043 3.957 24 C -0.123 4.123 25 C -0.129 4.129 26 C 0.033 3.967 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.413 0.587 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.418 -19.688 1.537 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.691 3.309 12 O -0.959 6.959 13 O -0.960 6.960 14 N -0.872 5.872 15 C 0.048 3.952 16 C -0.127 4.127 17 C -0.079 4.079 18 C -0.202 4.202 19 C -0.045 4.045 20 N -0.227 5.227 21 C 0.072 3.928 22 N -0.186 5.186 23 C -0.083 4.083 24 C -0.161 4.161 25 C -0.167 4.167 26 C -0.094 4.094 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.543 -19.373 1.070 24.248 hybrid contribution 1.070 0.379 0.307 1.176 sum 15.613 -18.994 1.378 24.626 Atomic orbital electron populations 1.69944 1.06111 1.27248 1.49626 1.25063 0.94953 0.99488 0.94981 0.86544 0.79497 0.82619 0.78676 1.20098 1.21130 1.20102 1.20969 0.93029 0.89787 1.52046 0.92077 1.18958 0.92724 0.90631 0.98806 1.30413 1.13589 1.17868 1.10159 1.05498 0.74645 0.76666 0.74066 1.93550 1.71758 1.85360 1.45194 1.93528 1.71554 1.85082 1.45835 1.55670 1.52167 1.52266 1.27050 1.19895 0.92250 0.93842 0.89237 1.20486 0.96654 0.97326 0.98187 1.21624 0.97973 0.91644 0.96669 1.22123 0.98084 0.98815 1.01208 1.22549 0.94389 0.96543 0.91039 1.67660 1.29516 1.01075 1.24463 1.19910 0.91591 0.89053 0.92244 1.62825 1.33231 1.20326 1.02207 1.23284 0.89713 0.97266 0.98019 1.22501 1.00848 0.99036 0.93730 1.22381 0.97961 0.97303 0.99052 1.22945 0.97984 0.99241 0.89227 0.92516 0.94903 0.94911 0.86384 0.85928 0.75428 0.89749 0.90407 0.83953 0.84537 0.82845 0.89358 0.92931 0.90786 0.89973 0.91485 0.90703 0.90878 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.19 6.01 37.16 0.22 -10.96 16 11 S 2.59 46.74 5.46 -107.50 -0.59 46.15 16 12 O -0.97 -20.50 18.08 -57.54 -1.04 -21.54 16 13 O -0.97 -19.99 17.50 -57.54 -1.01 -21.00 16 14 N -1.11 -15.14 5.88 -11.65 -0.07 -15.21 16 15 C 0.17 2.05 5.88 -5.19 -0.03 2.02 16 16 C -0.12 -1.31 5.31 -104.27 -0.55 -1.87 16 17 C -0.05 -0.48 9.80 -39.32 -0.39 -0.86 16 18 C -0.18 -1.40 10.10 -39.42 -0.40 -1.80 16 19 C 0.11 0.96 11.18 -17.57 -0.20 0.76 16 20 N -0.52 -5.52 8.67 -12.44 -0.11 -5.63 16 21 C 0.30 3.36 5.53 -155.01 -0.86 2.51 16 22 N -0.46 -5.00 4.48 -169.26 -0.76 -5.75 16 23 C 0.04 0.41 6.50 -1.90 -0.01 0.40 16 24 C -0.12 -1.05 7.06 -24.87 -0.18 -1.22 16 25 C -0.13 -1.09 6.93 -25.38 -0.18 -1.26 16 26 C 0.03 0.33 6.59 -2.76 -0.02 0.31 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 32 H 0.41 5.25 8.61 -34.48 -0.30 4.96 16 33 H 0.08 0.96 7.57 -51.93 -0.39 0.56 16 34 H 0.08 0.84 7.85 -51.93 -0.41 0.44 16 35 H 0.14 1.09 8.05 -52.49 -0.42 0.66 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.77 6.56 -51.93 -0.34 0.43 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -35.56 384.80 -12.07 -47.63 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.89 Total: 3.70 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -3.13 Total: -24.49 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.20 Total: -52.41 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.05 Total: -42.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.59 Total: 46.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.56 -12.07 -47.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594803535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.600 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds