Wall clock time and date at job start Tue Mar 31 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48501 * 109.47237 * 240.00203 * 3 2 1 5 5 H 1.48504 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47354 * 120.00005 * 3 2 1 7 7 C 1.37875 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99575 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46971 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.46987 * 180.02562 * 10 9 7 12 12 O 1.42108 * 110.54477 * 68.37453 * 11 10 9 13 13 O 1.42094 * 110.54541 * 291.62088 * 11 10 9 14 14 N 1.65605 * 104.44690 * 179.97438 * 11 10 9 15 15 C 1.46501 * 119.99758 * 65.00267 * 14 11 10 16 16 C 1.50702 * 109.46913 * 164.99790 * 15 14 11 17 17 C 1.38340 * 120.44760 * 257.20438 * 16 15 14 18 18 C 1.38844 * 118.50106 * 180.02562 * 17 16 15 19 19 C 1.38069 * 119.33043 * 0.27624 * 18 17 16 20 20 N 1.31943 * 120.85012 * 359.42752 * 19 18 17 21 21 C 1.32431 * 121.62399 * 0.58416 * 20 19 18 22 22 N 1.39000 * 119.70054 * 179.68149 * 21 20 19 23 23 C 1.48530 * 111.00419 * 279.54399 * 22 21 20 24 24 C 1.54934 * 103.23047 * 159.72328 * 23 22 21 25 25 C 1.54594 * 102.92194 * 322.59034 * 24 23 22 26 26 C 1.47896 * 111.00550 * 36.94607 * 22 21 20 27 27 H 0.97005 * 120.00338 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47082 * 60.00566 * 9 7 2 29 29 H 1.08997 * 109.47681 * 300.00024 * 9 7 2 30 30 H 1.08999 * 109.46814 * 59.99719 * 10 9 7 31 31 H 1.08998 * 109.46534 * 299.99790 * 10 9 7 32 32 H 0.97002 * 120.00147 * 245.00110 * 14 11 10 33 33 H 1.09003 * 109.46744 * 44.99836 * 15 14 11 34 34 H 1.08996 * 109.46732 * 284.99974 * 15 14 11 35 35 H 1.07995 * 120.75249 * 0.04602 * 17 16 15 36 36 H 1.08006 * 120.33212 * 180.02562 * 18 17 16 37 37 H 1.07994 * 119.57179 * 179.72577 * 19 18 17 38 38 H 1.08995 * 110.67149 * 278.16393 * 23 22 21 39 39 H 1.09001 * 110.66714 * 41.29009 * 23 22 21 40 40 H 1.09001 * 110.73030 * 204.23264 * 24 23 22 41 41 H 1.08999 * 110.87506 * 81.01643 * 24 23 22 42 42 H 1.09000 * 110.31097 * 263.03737 * 25 24 23 43 43 H 1.09000 * 110.30850 * 140.87142 * 25 24 23 44 44 H 1.09000 * 109.91539 * 333.50649 * 26 22 21 45 45 H 1.09000 * 109.91813 * 94.79573 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2329 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6641 -5.4201 1.2354 14 7 2.5207 -6.3926 -0.0020 15 6 3.4191 -6.5233 1.1479 16 6 4.1392 -7.8451 1.0749 17 6 3.7469 -8.9023 1.8763 18 6 4.4390 -10.1018 1.7765 19 6 5.4941 -10.2022 0.8916 20 7 5.8427 -9.1788 0.1354 21 6 5.2076 -8.0185 0.2014 22 7 5.6127 -6.9646 -0.6093 23 6 6.7968 -6.2759 -0.0350 24 6 7.4037 -5.5377 -1.2545 25 6 7.1855 -6.5414 -2.4099 26 6 6.0357 -7.4516 -1.9402 27 1 -0.4851 0.8401 0.0004 28 1 0.6242 -2.5566 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 2.6184 -6.9853 -0.7636 33 1 2.8389 -6.4759 2.0694 34 1 4.1467 -5.7119 1.1344 35 1 2.9206 -8.7972 2.5638 36 1 4.1575 -10.9465 2.3879 37 1 6.0380 -11.1320 0.8141 38 1 6.4933 -5.5648 0.7332 39 1 7.5051 -6.9999 0.3678 40 1 8.4666 -5.3500 -1.1022 41 1 6.8727 -4.6056 -1.4480 42 1 8.0887 -7.1284 -2.5767 43 1 6.9026 -6.0140 -3.3209 44 1 6.3844 -8.4816 -1.8650 45 1 5.2027 -7.3890 -2.6404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594803535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:11 Heat of formation + Delta-G solvation = -55.510848 kcal Electronic energy + Delta-G solvation = -27714.009413 eV Core-core repulsion = 23857.445368 eV Total energy + Delta-G solvation = -3856.564046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80618 -39.14566 -38.13460 -37.00921 -36.62285 -35.85486 -33.81136 -33.08557 -32.94439 -30.14805 -29.83563 -27.54669 -26.85273 -24.68582 -23.55102 -23.00286 -22.05773 -21.68555 -20.27039 -19.07714 -18.55568 -18.24210 -17.89339 -17.49326 -16.97756 -16.51855 -16.44527 -16.26608 -15.87632 -15.53507 -15.19934 -14.90374 -14.62219 -14.47604 -14.25294 -13.96300 -13.93851 -13.67670 -13.36837 -13.26765 -13.17047 -13.07408 -12.99603 -12.87544 -12.76070 -12.48073 -12.24373 -12.18463 -12.13603 -12.07758 -11.71030 -11.43297 -11.18090 -10.78961 -10.70335 -10.60793 -10.30007 -10.07233 -9.37796 -8.22692 -6.36358 -0.65742 0.05489 0.26777 1.42783 1.46331 1.54292 1.93560 2.40669 2.68576 2.77194 2.85121 3.10711 3.30118 3.42717 3.66803 3.84211 3.89813 3.93963 4.06458 4.09605 4.14377 4.19371 4.32202 4.37870 4.45914 4.54188 4.58717 4.74317 4.81550 4.84939 4.91642 4.92360 4.96507 5.07798 5.12974 5.20778 5.27898 5.31674 5.31929 5.33136 5.56897 5.71589 5.71899 6.09308 6.11446 6.25165 6.77189 6.93109 7.33524 8.89431 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003376 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.475566 B = 8292.966411 C = 9705.025058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.583 4.583 11 S 2.622 3.378 12 O -1.002 7.002 13 O -0.996 6.996 14 N -1.097 6.097 15 C 0.168 3.832 16 C -0.137 4.137 17 C -0.059 4.059 18 C -0.173 4.173 19 C 0.108 3.892 20 N -0.533 5.533 21 C 0.289 3.711 22 N -0.474 5.474 23 C 0.043 3.957 24 C -0.120 4.120 25 C -0.125 4.125 26 C 0.032 3.968 27 H 0.267 0.733 28 H 0.004 0.996 29 H 0.008 0.992 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.419 0.581 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.776 -20.564 2.140 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.716 4.716 11 S 2.719 3.281 12 O -0.992 6.992 13 O -0.986 6.986 14 N -0.857 5.857 15 C 0.042 3.958 16 C -0.142 4.142 17 C -0.085 4.085 18 C -0.193 4.193 19 C -0.050 4.050 20 N -0.246 5.246 21 C 0.060 3.940 22 N -0.196 5.196 23 C -0.083 4.083 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.095 4.095 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.254 0.746 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.916 -20.251 1.670 26.439 hybrid contribution 0.364 0.486 0.160 0.627 sum 17.280 -19.766 1.830 26.317 Atomic orbital electron populations 1.70097 1.08084 1.28314 1.50994 1.26109 0.95828 1.03842 0.94465 0.85383 0.78140 0.77361 0.79475 1.18839 1.21125 1.18645 1.21489 0.94007 0.90731 1.51348 0.90524 1.18824 0.93612 0.93128 0.96292 1.30294 1.12650 1.16247 1.12372 1.04390 0.74583 0.76482 0.72667 1.93498 1.73252 1.85858 1.46625 1.93491 1.72717 1.85474 1.46868 1.55212 1.51696 1.50644 1.28108 1.20102 0.92137 0.95257 0.88280 1.20417 0.97082 0.97266 0.99423 1.21902 0.98402 0.91750 0.96482 1.22452 0.97032 0.99100 1.00715 1.23108 0.94612 0.96891 0.90372 1.67687 1.30062 1.01457 1.25368 1.19995 0.91983 0.89427 0.92642 1.62818 1.33719 1.20629 1.02459 1.23303 0.89425 0.97159 0.98411 1.22499 1.01601 0.98474 0.93243 1.22369 0.97750 0.97123 0.99060 1.22930 0.98233 0.99243 0.89067 0.92459 0.97753 0.97409 0.83857 0.84102 0.74567 0.89327 0.89457 0.82671 0.81452 0.80194 0.89222 0.93307 0.89300 0.90710 0.90527 0.90446 0.91597 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.07 4.98 29.85 0.15 1.21 16 10 C -0.58 -22.04 6.01 71.98 0.43 -21.61 16 11 S 2.62 94.65 5.46 -56.49 -0.31 94.34 16 12 O -1.00 -43.09 18.08 -127.65 -2.31 -45.40 16 13 O -1.00 -41.23 17.50 -127.65 -2.23 -43.46 16 14 N -1.10 -28.81 5.88 -190.79 -1.12 -29.93 16 15 C 0.17 3.72 5.88 85.63 0.50 4.23 16 16 C -0.14 -2.75 5.31 -19.63 -0.10 -2.85 16 17 C -0.06 -0.94 9.80 22.44 0.22 -0.72 16 18 C -0.17 -2.15 10.10 22.37 0.23 -1.92 16 19 C 0.11 1.56 11.18 84.64 0.95 2.51 16 20 N -0.53 -10.62 8.67 -193.27 -1.68 -12.29 16 21 C 0.29 6.09 5.53 133.04 0.74 6.82 16 22 N -0.47 -9.75 4.48 -689.40 -3.09 -12.83 16 23 C 0.04 0.76 6.50 86.65 0.56 1.33 16 24 C -0.12 -1.87 7.06 31.80 0.22 -1.65 16 25 C -0.12 -1.95 6.93 31.47 0.22 -1.74 16 26 C 0.03 0.63 6.59 86.45 0.57 1.20 16 27 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 31 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 32 H 0.42 10.34 8.61 -96.74 -0.83 9.51 16 33 H 0.09 1.89 7.57 -2.39 -0.02 1.87 16 34 H 0.09 1.76 7.85 -2.39 -0.02 1.74 16 35 H 0.16 2.01 8.05 -2.91 -0.02 1.99 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 39 H 0.05 0.90 8.00 -2.39 -0.02 0.88 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.36 6.56 -2.39 -0.02 1.34 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.63 384.80 -2.88 -80.51 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.16 Total: 23.08 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 5.38 Total: -42.40 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -5.60 Total: -111.87 kcal Atomic # 8 Polarization: -84.32 SS G_CDS: -4.54 Total: -88.86 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 94.65 SS G_CDS: -0.31 Total: 94.34 kcal Total: -77.63 -2.88 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594803535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.000 kcal (2) G-P(sol) polarization free energy of solvation -77.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds