Wall clock time and date at job start Tue Mar 31 2020 22:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47438 * 300.00286 * 3 2 1 6 6 H 1.48503 * 109.47246 * 60.00115 * 3 2 1 7 7 C 1.37871 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00226 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99884 * 270.00635 * 10 9 7 12 12 C 1.53000 * 109.46986 * 269.99545 * 11 10 9 13 13 N 1.46896 * 109.47078 * 180.02562 * 12 11 10 14 14 C 1.47016 * 110.99909 * 293.63372 * 13 12 11 15 15 C 1.53094 * 109.26212 * 177.61202 * 14 13 12 16 16 O 1.43015 * 109.26035 * 56.84528 * 15 14 13 17 17 C 1.43017 * 113.74086 * 301.33496 * 16 15 14 18 18 C 1.47016 * 111.00324 * 170.00256 * 13 12 11 19 19 C 1.34777 * 119.99858 * 89.99981 * 10 9 7 20 20 O 1.21279 * 120.00166 * 180.02562 * 19 10 9 21 21 C 1.50706 * 119.99762 * 0.02562 * 19 10 9 22 22 C 1.50699 * 109.46817 * 179.97438 * 21 19 10 23 23 C 1.33639 * 122.74972 * 124.73434 * 22 21 19 24 24 S 1.76206 * 107.92497 * 179.97438 * 23 22 21 25 25 C 1.70979 * 90.28009 * 0.27294 * 24 23 22 26 26 N 1.29021 * 110.16934 * 359.84124 * 25 24 23 27 27 H 0.97005 * 120.00087 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46869 * 60.00158 * 9 7 2 29 29 H 1.08997 * 109.47330 * 300.00555 * 9 7 2 30 30 H 1.09000 * 109.47710 * 29.99936 * 11 10 9 31 31 H 1.09000 * 109.46883 * 149.99979 * 11 10 9 32 32 H 1.09005 * 109.47322 * 299.99960 * 12 11 10 33 33 H 1.08991 * 109.47114 * 60.00204 * 12 11 10 34 34 H 1.09010 * 109.50655 * 297.54680 * 14 13 12 35 35 H 1.09000 * 109.51019 * 57.67333 * 14 13 12 36 36 H 1.09009 * 109.50554 * 296.91592 * 15 14 13 37 37 H 1.09003 * 109.54747 * 176.80570 * 15 14 13 38 38 H 1.09003 * 109.50544 * 298.73729 * 17 16 15 39 39 H 1.08996 * 109.54317 * 178.62259 * 17 16 15 40 40 H 1.09004 * 109.50255 * 302.32677 * 18 13 12 41 41 H 1.09004 * 109.50951 * 62.40519 * 18 13 12 42 42 H 1.09000 * 109.47318 * 299.99141 * 21 19 10 43 43 H 1.09000 * 109.47161 * 59.99772 * 21 19 10 44 44 H 1.08002 * 126.03735 * 0.03496 * 23 22 21 45 45 H 1.08004 * 124.91199 * 179.84189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1693 -1.2692 12 6 1.7485 -5.3005 -1.7110 13 7 2.2262 -5.8591 -2.9828 14 6 2.1084 -4.8743 -4.0681 15 6 2.6708 -5.4755 -5.3588 16 8 1.9783 -6.6915 -5.6537 17 6 2.0727 -7.6735 -4.6183 18 6 1.5041 -7.0946 -3.3200 19 6 2.6409 -4.1249 1.1667 20 8 3.4294 -5.0464 1.1667 21 6 2.1508 -3.5524 2.4718 22 6 2.7867 -4.2971 3.6172 23 6 3.4775 -3.6843 4.5833 24 16 4.0410 -4.9150 5.7113 25 6 3.2986 -6.1321 4.7674 26 7 2.7127 -5.6067 3.7450 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.6870 -3.3877 -2.0289 31 1 3.6886 -4.5593 -1.1388 32 1 1.7407 -6.0823 -0.9514 33 1 0.7391 -4.9106 -1.8414 34 1 1.0592 -4.6167 -4.2135 35 1 2.6714 -3.9777 -3.8087 36 1 3.7332 -5.6836 -5.2307 37 1 2.5343 -4.7708 -6.1791 38 1 3.1176 -7.9454 -4.4686 39 1 1.5033 -8.5586 -4.9021 40 1 1.6260 -7.8187 -2.5145 41 1 0.4452 -6.8727 -3.4528 42 1 2.4197 -2.4977 2.5298 43 1 1.0671 -3.6548 2.5293 44 1 3.6575 -2.6221 4.6597 45 1 3.3174 -7.1879 4.9942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597023539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:49 Heat of formation + Delta-G solvation = -23.235849 kcal Electronic energy + Delta-G solvation = -27464.582434 eV Core-core repulsion = 23609.417937 eV Total energy + Delta-G solvation = -3855.164497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96514 -39.52294 -38.53793 -36.06389 -34.74426 -32.66839 -31.91243 -31.20993 -29.87324 -27.91382 -27.26595 -25.73158 -24.55693 -24.00740 -22.99875 -21.99898 -20.31273 -19.51192 -18.67432 -17.48828 -16.74082 -16.49810 -16.32954 -16.12953 -15.64055 -15.28814 -15.08884 -14.97519 -14.65261 -14.47398 -14.16828 -14.00725 -13.57504 -13.14838 -13.03423 -12.91123 -12.53626 -12.37512 -12.21030 -12.01218 -11.68784 -11.51644 -11.40015 -11.29531 -11.12230 -10.94937 -10.84022 -10.66847 -10.38656 -10.15057 -9.82382 -9.66491 -9.42455 -9.29913 -9.06037 -8.67764 -8.53455 -8.32293 -7.73290 -6.24676 -4.32754 0.92270 1.57052 1.88016 3.03839 3.16661 3.26140 3.29657 3.43183 3.64546 3.84420 4.20296 4.30627 4.43161 4.87029 5.01421 5.04113 5.08380 5.13724 5.20450 5.27232 5.35101 5.43599 5.51605 5.55172 5.57617 5.66619 5.68641 5.78113 5.84811 5.97178 5.98036 5.98978 6.08115 6.29517 6.40723 6.47218 6.69181 7.00993 7.06479 7.11759 7.12486 7.51750 7.70694 7.98512 7.99465 8.31127 8.74451 9.03844 9.36263 10.81789 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.003970 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3950.114378 B = 7052.033851 C =10489.739326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.598 5.598 11 C 0.129 3.871 12 C 0.045 3.955 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.524 3.476 20 O -0.554 6.554 21 C -0.065 4.065 22 C 0.094 3.906 23 C -0.249 4.249 24 S 0.084 5.916 25 C 0.022 3.978 26 N -0.440 5.440 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.178 0.822 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -10.448 1.689 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.329 5.329 11 C 0.005 3.995 12 C -0.084 4.084 13 N -0.259 5.259 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.311 3.689 20 O -0.433 6.433 21 C -0.107 4.107 22 C -0.038 4.038 23 C -0.388 4.388 24 S 0.335 5.665 25 C -0.278 4.278 26 N -0.152 5.152 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.196 0.804 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.736 -11.315 2.112 12.447 hybrid contribution -0.833 1.823 -0.480 2.061 sum 3.903 -9.493 1.632 10.393 Atomic orbital electron populations 1.69931 1.06021 1.27270 1.49614 1.24941 0.94820 0.99283 0.94683 0.86487 0.80181 0.83287 0.77830 1.19616 1.20832 1.20784 1.21540 0.93684 0.90410 1.52122 0.91948 1.19446 0.87525 0.82723 0.98626 1.48130 1.45886 1.34826 1.04108 1.21119 0.97812 0.94560 0.86015 1.22509 0.97305 0.98278 0.90286 1.62144 1.56111 1.04898 1.02741 1.22879 1.00785 0.96218 0.91726 1.22681 0.96048 0.86099 0.96397 1.87953 1.75022 1.25558 1.42256 1.22641 1.00985 0.91030 0.86517 1.22759 0.96401 0.93294 0.98546 1.20086 0.81128 0.82421 0.85240 1.90633 1.35494 1.29593 1.87628 1.20286 1.01524 1.00352 0.88527 1.19938 0.98767 0.88268 0.96801 1.26812 1.07624 1.04462 0.99899 1.83795 1.53534 1.00093 1.29076 1.28337 1.00606 1.04441 0.94377 1.66050 1.19425 1.11246 1.18516 0.92520 0.94807 0.94372 0.90637 0.90270 0.90523 0.94459 0.93776 0.88898 0.92284 0.88517 0.92312 0.88716 0.89706 0.94073 0.86198 0.87547 0.80438 0.78840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.29 55.43 0.74 -22.98 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.38 9.28 -34.44 -0.32 -13.70 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.24 5.38 4.97 -5.19 -0.03 5.35 16 10 N -0.60 -12.31 2.46 -175.06 -0.43 -12.74 16 11 C 0.13 2.40 5.34 -4.04 -0.02 2.38 16 12 C 0.04 0.75 5.28 -3.83 -0.02 0.73 16 13 N -0.53 -7.84 4.73 -234.31 -1.11 -8.94 16 14 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 15 C 0.06 0.77 7.01 37.21 0.26 1.03 16 16 O -0.39 -5.11 10.83 -35.23 -0.38 -5.49 16 17 C 0.07 0.74 7.01 37.21 0.26 1.00 16 18 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 19 C 0.52 10.91 7.64 -10.98 -0.08 10.83 16 20 O -0.55 -12.73 15.02 5.56 0.08 -12.65 16 21 C -0.06 -1.18 4.75 -29.03 -0.14 -1.32 16 22 C 0.09 1.62 5.64 -84.22 -0.47 1.15 16 23 C -0.25 -3.61 11.07 29.12 0.32 -3.29 16 24 S 0.08 0.99 23.22 -107.50 -2.50 -1.51 16 25 C 0.02 0.29 12.23 51.58 0.63 0.92 16 26 N -0.44 -7.67 9.68 -11.90 -0.12 -7.78 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 0.89 6.44 -51.93 -0.33 0.55 16 30 H 0.08 1.39 6.45 -51.93 -0.33 1.06 16 31 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 32 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.09 1.27 6.38 -51.93 -0.33 0.93 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.12 2.17 7.89 -51.93 -0.41 1.77 16 43 H 0.11 1.88 7.40 -51.93 -0.38 1.49 16 44 H 0.18 2.21 8.06 -52.49 -0.42 1.78 16 45 H 0.19 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -30.56 382.21 -9.50 -40.07 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.79 Total: 4.43 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 0.25 Total: 7.01 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.92 Total: -52.44 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.30 Total: -18.14 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.56 -9.50 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597023539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.830 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds