Wall clock time and date at job start Tue Mar 31 2020 22:55:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38301 * 119.96141 * 2 1
4 4 C 1.38271 * 120.14732 * 179.72192 * 3 2 1
5 5 C 1.38132 * 120.07428 * 0.51199 * 4 3 2
6 6 S 1.76192 * 120.03740 * 179.76558 * 5 4 3
7 7 N 1.65602 * 107.21802 * 114.72399 * 6 5 4
8 8 O 1.42104 * 106.40354 * 1.18500 * 6 5 4
9 9 O 1.42098 * 106.40441 * 228.26274 * 6 5 4
10 10 C 1.38890 * 119.92203 * 359.48977 * 5 4 3
11 11 N 1.39671 * 120.07152 * 180.27616 * 10 5 4
12 12 C 1.46509 * 119.99781 * 179.97438 * 11 10 5
13 13 C 1.53036 * 109.45901 * 275.06589 * 12 11 10
14 14 C 1.53194 * 109.31013 * 178.61212 * 13 12 11
15 15 N 1.46924 * 108.77364 * 54.63836 * 14 13 12
16 16 C 1.36939 * 120.63160 * 126.36439 * 15 14 13
17 17 H 1.07997 * 119.99959 * 331.87071 * 16 15 14
18 18 C 1.38813 * 120.00006 * 151.86421 * 16 15 14
19 19 N 1.31616 * 120.00217 * 343.06578 * 18 16 15
20 20 Si 1.86799 * 120.00104 * 163.06666 * 18 16 15
21 21 H 1.48502 * 109.47003 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47611 * 119.99763 * 20 18 16
23 23 H 1.48502 * 109.47381 * 240.00149 * 20 18 16
24 24 C 1.46929 * 118.74030 * 306.39306 * 15 14 13
25 25 C 1.53041 * 109.45592 * 154.99799 * 12 11 10
26 26 C 1.38090 * 119.95912 * 179.97438 * 2 1 3
27 27 H 1.09002 * 109.46942 * 270.02092 * 1 2 3
28 28 H 1.08998 * 109.46800 * 30.02139 * 1 2 3
29 29 H 1.09001 * 109.46754 * 150.02160 * 1 2 3
30 30 H 1.07996 * 119.92882 * 359.97438 * 3 2 1
31 31 H 1.07993 * 119.96400 * 180.27438 * 4 3 2
32 32 H 0.97005 * 119.99622 * 240.00257 * 7 6 5
33 33 H 0.96996 * 120.00392 * 59.71721 * 7 6 5
34 34 H 0.96999 * 120.00221 * 0.02562 * 11 10 5
35 35 H 1.08994 * 109.45828 * 35.03138 * 12 11 10
36 36 H 1.08995 * 109.50143 * 298.56895 * 13 12 11
37 37 H 1.09004 * 109.49331 * 58.66754 * 13 12 11
38 38 H 1.08994 * 109.58950 * 294.85110 * 14 13 12
39 39 H 1.09003 * 109.70372 * 174.49214 * 14 13 12
40 40 H 0.96995 * 120.00192 * 179.97438 * 19 18 16
41 41 H 1.09002 * 109.58158 * 293.81542 * 24 15 14
42 42 H 1.09000 * 109.70256 * 173.46676 * 24 15 14
43 43 H 1.08997 * 109.50217 * 301.33606 * 25 12 11
44 44 H 1.09003 * 109.49453 * 61.40327 * 25 12 11
45 45 H 1.07997 * 120.03867 * 0.04114 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1977 1.1982 0.0000
4 6 3.5804 1.2027 0.0058
5 6 4.2766 0.0096 0.0009
6 16 6.0385 0.0165 0.0021
7 7 6.5303 -0.6496 1.4363
8 8 6.4344 1.3808 0.0366
9 8 6.4440 -0.8849 -1.0188
10 6 3.5860 -1.1954 0.0009
11 7 4.2867 -2.4037 0.0018
12 6 3.5566 -3.6739 0.0024
13 6 3.1917 -4.0515 1.4398
14 6 2.3985 -5.3621 1.4335
15 7 3.1783 -6.3833 0.7207
16 6 3.4535 -7.5883 1.3100
17 1 3.5235 -7.6601 2.3853
18 6 3.6424 -8.7177 0.5253
19 7 3.2396 -8.7233 -0.7277
20 14 4.4682 -10.2295 1.2475
21 1 4.8250 -9.9689 2.6653
22 1 3.5374 -11.3843 1.1752
23 1 5.6995 -10.5371 0.4763
24 6 3.6577 -6.0867 -0.6361
25 6 4.4366 -4.7679 -0.6066
26 6 2.1966 -1.1964 0.0005
27 1 -0.3633 0.0004 1.0277
28 1 -0.3633 0.8898 -0.5142
29 1 -0.3633 -0.8902 -0.5135
30 1 1.6560 2.1324 -0.0004
31 1 4.1168 2.1400 0.0103
32 1 7.0726 -0.1310 2.0511
33 1 6.2727 -1.5567 1.6634
34 1 5.2567 -2.4018 0.0029
35 1 2.6463 -3.5697 -0.5878
36 1 4.1024 -4.1802 2.0246
37 1 2.5844 -3.2609 1.8806
38 1 1.4457 -5.2102 0.9266
39 1 2.2194 -5.6883 2.4580
40 1 3.3719 -9.5122 -1.2762
41 1 2.8074 -5.9939 -1.3118
42 1 4.3107 -6.8893 -0.9788
43 1 4.7154 -4.4873 -1.6223
44 1 5.3360 -4.8894 -0.0028
45 1 1.6566 -2.1317 0.0003
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601113100.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:55:00
Heat of formation + Delta-G solvation = -34.410367 kcal
Electronic energy + Delta-G solvation = -28207.426938 eV
Core-core repulsion = 24351.777878 eV
Total energy + Delta-G solvation = -3855.649060 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.95878 -37.98434 -37.30813 -35.95908 -35.36996 -33.41159 -33.15028 -32.18137
-30.63832 -29.77001 -28.56204 -27.37791 -25.02633 -22.94467 -22.48237 -21.81660
-21.18508 -19.84751 -19.28586 -18.19973 -17.79731 -17.08666 -16.88177 -16.27394
-16.12737 -15.06338 -14.83140 -14.60287 -14.37212 -14.32515 -14.14636 -13.80573
-13.65649 -13.33275 -13.05113 -12.50717 -12.42880 -12.39912 -12.35769 -12.31254
-12.17355 -12.09046 -11.65326 -11.47867 -11.18341 -11.08858 -10.87571 -10.80790
-10.72671 -10.45401 -10.43972 -10.18567 -9.96734 -9.68346 -9.61819 -9.17221
-8.55713 -7.66214 -6.78290 -5.87328 -3.30339 0.34187 0.86688 1.48825
2.99172 3.24910 3.32926 3.40928 3.42472 3.47134 3.68005 4.32394
4.42882 4.65110 4.72847 5.05645 5.17005 5.18063 5.27363 5.34831
5.39292 5.41278 5.42995 5.55289 5.60277 5.71219 5.75506 5.85822
5.91053 5.96805 6.10958 6.13865 6.31080 6.32498 6.39434 6.47888
6.53109 6.65737 6.73777 6.81924 6.83891 7.13303 7.23382 7.48886
7.56594 7.72683 8.36286 9.12344 9.75315 10.31253 11.21541
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015177 B = 0.003296 C = 0.002875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1844.422555 B = 8493.693134 C = 9737.576187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.013 3.987
3 C -0.205 4.205
4 C 0.024 3.976
5 C -0.765 4.765
6 S 2.703 3.297
7 N -1.248 6.248
8 O -0.968 6.968
9 O -0.960 6.960
10 C 0.319 3.681
11 N -0.734 5.734
12 C 0.151 3.849
13 C -0.147 4.147
14 C 0.148 3.852
15 N -0.592 5.592
16 C -0.256 4.256
17 H 0.067 0.933
18 C 0.004 3.996
19 N -0.901 5.901
20 Si 0.902 3.098
21 H -0.277 1.277
22 H -0.290 1.290
23 H -0.288 1.288
24 C 0.175 3.825
25 C -0.150 4.150
26 C -0.213 4.213
27 H 0.078 0.922
28 H 0.070 0.930
29 H 0.072 0.928
30 H 0.124 0.876
31 H 0.138 0.862
32 H 0.421 0.579
33 H 0.417 0.583
34 H 0.394 0.606
35 H 0.080 0.920
36 H 0.063 0.937
37 H 0.055 0.945
38 H 0.019 0.981
39 H 0.058 0.942
40 H 0.254 0.746
41 H 0.022 0.978
42 H 0.093 0.907
43 H 0.060 0.940
44 H 0.061 0.939
45 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.544 19.349 3.549 19.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.012 3.988
3 C -0.226 4.226
4 C 0.005 3.995
5 C -0.860 4.860
6 S 2.791 3.209
7 N -0.920 5.920
8 O -0.958 6.958
9 O -0.949 6.949
10 C 0.208 3.792
11 N -0.360 5.360
12 C 0.047 3.953
13 C -0.187 4.187
14 C 0.020 3.980
15 N -0.314 5.314
16 C -0.385 4.385
17 H 0.084 0.916
18 C -0.195 4.195
19 N -0.546 5.546
20 Si 0.732 3.268
21 H -0.202 1.202
22 H -0.217 1.217
23 H -0.215 1.215
24 C 0.048 3.952
25 C -0.189 4.189
26 C -0.236 4.236
27 H 0.096 0.904
28 H 0.089 0.911
29 H 0.091 0.909
30 H 0.142 0.858
31 H 0.156 0.844
32 H 0.250 0.750
33 H 0.245 0.755
34 H 0.232 0.768
35 H 0.098 0.902
36 H 0.081 0.919
37 H 0.074 0.926
38 H 0.037 0.963
39 H 0.076 0.924
40 H 0.064 0.936
41 H 0.040 0.960
42 H 0.111 0.889
43 H 0.078 0.922
44 H 0.080 0.920
45 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -0.121 19.352 2.591 19.525
hybrid contribution 0.171 -1.110 0.929 1.458
sum 0.050 18.242 3.521 18.578
Atomic orbital electron populations
1.20943 0.90881 1.03305 1.02894 1.19969 0.95967 0.92694 0.90217
1.20829 0.93895 0.97523 1.10326 1.20574 0.94425 0.95613 0.88935
1.29941 1.25480 0.98132 1.32409 1.01376 0.73646 0.73166 0.72664
1.53363 1.69505 1.27343 1.41832 1.93551 1.82019 1.33915 1.86322
1.93627 1.81135 1.65426 1.54758 1.17286 0.91992 0.84248 0.85704
1.45830 1.08626 1.03673 1.77906 1.21203 0.95668 0.81098 0.97290
1.22534 1.01326 0.99222 0.95632 1.20863 0.92417 0.87845 0.96832
1.44087 1.59504 1.13339 1.14502 1.19212 1.42909 0.84850 0.91564
0.91578 1.25054 1.00469 0.97371 0.96564 1.70020 1.47818 1.29114
1.07603 0.86232 0.79115 0.82891 0.78566 1.20248 1.21679 1.21497
1.20758 0.96077 0.92141 0.86219 1.22564 0.99427 0.97242 0.99707
1.20727 0.91928 0.98766 1.12146 0.90374 0.91093 0.90905 0.85755
0.84429 0.74952 0.75538 0.76848 0.90231 0.91858 0.92646 0.96334
0.92390 0.93556 0.96033 0.88875 0.92159 0.91979 0.84760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.01 10.01 36.01 0.36 -0.65 16
2 C 0.01 0.14 5.88 -104.65 -0.62 -0.47 16
3 C -0.20 -2.17 9.70 -39.55 -0.38 -2.56 16
4 C 0.02 0.28 9.54 -39.61 -0.38 -0.10 16
5 C -0.76 -9.60 5.92 -39.38 -0.23 -9.83 16
6 S 2.70 32.31 5.55 -107.50 -0.60 31.71 16
7 N -1.25 -10.50 9.47 60.35 0.57 -9.93 16
8 O -0.97 -13.28 16.97 -57.17 -0.97 -14.25 16
9 O -0.96 -14.60 16.29 -57.17 -0.93 -15.53 16
10 C 0.32 4.29 6.59 -83.79 -0.55 3.74 16
11 N -0.73 -10.22 5.06 -52.12 -0.26 -10.48 16
12 C 0.15 2.36 2.11 -67.89 -0.14 2.21 16
13 C -0.15 -2.30 5.59 -26.61 -0.15 -2.45 16
14 C 0.15 2.84 6.52 -3.71 -0.02 2.81 16
15 N -0.59 -13.91 2.99 -172.32 -0.52 -14.42 16
16 C -0.26 -6.71 9.58 -15.06 -0.14 -6.86 16
17 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16
18 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16
19 N -0.90 -25.30 11.19 55.49 0.62 -24.68 16
20 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16
21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
24 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16
25 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16
26 C -0.21 -2.71 8.49 -39.38 -0.33 -3.05 16
27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16
30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
31 H 0.14 1.37 7.33 -52.49 -0.38 0.98 16
32 H 0.42 2.57 8.96 -34.47 -0.31 2.26 16
33 H 0.42 3.25 8.05 -34.47 -0.28 2.97 16
34 H 0.39 5.30 5.04 -40.82 -0.21 5.10 16
35 H 0.08 1.26 6.48 -51.93 -0.34 0.92 16
36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
37 H 0.05 0.77 7.73 -51.93 -0.40 0.36 16
38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16
40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16
41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16
43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
45 H 0.13 1.69 6.14 -52.49 -0.32 1.37 16
LS Contribution 367.16 15.07 5.53 5.53
Total: -1.00 -32.65 367.16 -10.74 -43.40
By element:
Atomic # 1 Polarization: 15.05 SS G_CDS: -6.31 Total: 8.74 kcal
Atomic # 6 Polarization: -13.25 SS G_CDS: -2.85 Total: -16.10 kcal
Atomic # 7 Polarization: -59.93 SS G_CDS: 0.41 Total: -59.51 kcal
Atomic # 8 Polarization: -27.87 SS G_CDS: -1.90 Total: -29.78 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal
Atomic # 16 Polarization: 32.31 SS G_CDS: -0.60 Total: 31.71 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -32.65 -10.74 -43.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601113100.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal
(2) G-P(sol) polarization free energy of solvation -32.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.667 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds