Wall clock time and date at job start Tue Mar 31 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38301 * 119.96141 * 2 1 4 4 C 1.38271 * 120.14732 * 179.72192 * 3 2 1 5 5 C 1.38132 * 120.07428 * 0.51199 * 4 3 2 6 6 S 1.76192 * 120.03740 * 179.76558 * 5 4 3 7 7 N 1.65602 * 107.21802 * 114.72399 * 6 5 4 8 8 O 1.42104 * 106.40354 * 1.18500 * 6 5 4 9 9 O 1.42098 * 106.40441 * 228.26274 * 6 5 4 10 10 C 1.38890 * 119.92203 * 359.48977 * 5 4 3 11 11 N 1.39671 * 120.07152 * 180.27616 * 10 5 4 12 12 C 1.46509 * 119.99781 * 179.97438 * 11 10 5 13 13 C 1.53036 * 109.45901 * 275.06589 * 12 11 10 14 14 C 1.53194 * 109.31013 * 178.61212 * 13 12 11 15 15 N 1.46924 * 108.77364 * 54.63836 * 14 13 12 16 16 C 1.36939 * 120.63160 * 126.36439 * 15 14 13 17 17 H 1.07997 * 119.99959 * 331.87071 * 16 15 14 18 18 C 1.38813 * 120.00006 * 151.86421 * 16 15 14 19 19 N 1.31616 * 120.00217 * 343.06578 * 18 16 15 20 20 Si 1.86799 * 120.00104 * 163.06666 * 18 16 15 21 21 H 1.48502 * 109.47003 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47611 * 119.99763 * 20 18 16 23 23 H 1.48502 * 109.47381 * 240.00149 * 20 18 16 24 24 C 1.46929 * 118.74030 * 306.39306 * 15 14 13 25 25 C 1.53041 * 109.45592 * 154.99799 * 12 11 10 26 26 C 1.38090 * 119.95912 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46942 * 270.02092 * 1 2 3 28 28 H 1.08998 * 109.46800 * 30.02139 * 1 2 3 29 29 H 1.09001 * 109.46754 * 150.02160 * 1 2 3 30 30 H 1.07996 * 119.92882 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.96400 * 180.27438 * 4 3 2 32 32 H 0.97005 * 119.99622 * 240.00257 * 7 6 5 33 33 H 0.96996 * 120.00392 * 59.71721 * 7 6 5 34 34 H 0.96999 * 120.00221 * 0.02562 * 11 10 5 35 35 H 1.08994 * 109.45828 * 35.03138 * 12 11 10 36 36 H 1.08995 * 109.50143 * 298.56895 * 13 12 11 37 37 H 1.09004 * 109.49331 * 58.66754 * 13 12 11 38 38 H 1.08994 * 109.58950 * 294.85110 * 14 13 12 39 39 H 1.09003 * 109.70372 * 174.49214 * 14 13 12 40 40 H 0.96995 * 120.00192 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58158 * 293.81542 * 24 15 14 42 42 H 1.09000 * 109.70256 * 173.46676 * 24 15 14 43 43 H 1.08997 * 109.50217 * 301.33606 * 25 12 11 44 44 H 1.09003 * 109.49453 * 61.40327 * 25 12 11 45 45 H 1.07997 * 120.03867 * 0.04114 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2027 0.0058 5 6 4.2766 0.0096 0.0009 6 16 6.0385 0.0165 0.0021 7 7 6.5303 -0.6496 1.4363 8 8 6.4344 1.3808 0.0366 9 8 6.4440 -0.8849 -1.0188 10 6 3.5860 -1.1954 0.0009 11 7 4.2867 -2.4037 0.0018 12 6 3.5566 -3.6739 0.0024 13 6 3.1917 -4.0515 1.4398 14 6 2.3985 -5.3621 1.4335 15 7 3.1783 -6.3833 0.7207 16 6 3.4535 -7.5883 1.3100 17 1 3.5235 -7.6601 2.3853 18 6 3.6424 -8.7177 0.5253 19 7 3.2396 -8.7233 -0.7277 20 14 4.4682 -10.2295 1.2475 21 1 4.8250 -9.9689 2.6653 22 1 3.5374 -11.3843 1.1752 23 1 5.6995 -10.5371 0.4763 24 6 3.6577 -6.0867 -0.6361 25 6 4.4366 -4.7679 -0.6066 26 6 2.1966 -1.1964 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6560 2.1324 -0.0004 31 1 4.1168 2.1400 0.0103 32 1 7.0726 -0.1310 2.0511 33 1 6.2727 -1.5567 1.6634 34 1 5.2567 -2.4018 0.0029 35 1 2.6463 -3.5697 -0.5878 36 1 4.1024 -4.1802 2.0246 37 1 2.5844 -3.2609 1.8806 38 1 1.4457 -5.2102 0.9266 39 1 2.2194 -5.6883 2.4580 40 1 3.3719 -9.5122 -1.2762 41 1 2.8074 -5.9939 -1.3118 42 1 4.3107 -6.8893 -0.9788 43 1 4.7154 -4.4873 -1.6223 44 1 5.3360 -4.8894 -0.0028 45 1 1.6566 -2.1317 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601113100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:00 Heat of formation + Delta-G solvation = -34.410367 kcal Electronic energy + Delta-G solvation = -28207.426938 eV Core-core repulsion = 24351.777878 eV Total energy + Delta-G solvation = -3855.649060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.95878 -37.98434 -37.30813 -35.95908 -35.36996 -33.41159 -33.15028 -32.18137 -30.63832 -29.77001 -28.56204 -27.37791 -25.02633 -22.94467 -22.48237 -21.81660 -21.18508 -19.84751 -19.28586 -18.19973 -17.79731 -17.08666 -16.88177 -16.27394 -16.12737 -15.06338 -14.83140 -14.60287 -14.37212 -14.32515 -14.14636 -13.80573 -13.65649 -13.33275 -13.05113 -12.50717 -12.42880 -12.39912 -12.35769 -12.31254 -12.17355 -12.09046 -11.65326 -11.47867 -11.18341 -11.08858 -10.87571 -10.80790 -10.72671 -10.45401 -10.43972 -10.18567 -9.96734 -9.68346 -9.61819 -9.17221 -8.55713 -7.66214 -6.78290 -5.87328 -3.30339 0.34187 0.86688 1.48825 2.99172 3.24910 3.32926 3.40928 3.42472 3.47134 3.68005 4.32394 4.42882 4.65110 4.72847 5.05645 5.17005 5.18063 5.27363 5.34831 5.39292 5.41278 5.42995 5.55289 5.60277 5.71219 5.75506 5.85822 5.91053 5.96805 6.10958 6.13865 6.31080 6.32498 6.39434 6.47888 6.53109 6.65737 6.73777 6.81924 6.83891 7.13303 7.23382 7.48886 7.56594 7.72683 8.36286 9.12344 9.75315 10.31253 11.21541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003296 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.422555 B = 8493.693134 C = 9737.576187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.013 3.987 3 C -0.205 4.205 4 C 0.024 3.976 5 C -0.765 4.765 6 S 2.703 3.297 7 N -1.248 6.248 8 O -0.968 6.968 9 O -0.960 6.960 10 C 0.319 3.681 11 N -0.734 5.734 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.148 3.852 15 N -0.592 5.592 16 C -0.256 4.256 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.175 3.825 25 C -0.150 4.150 26 C -0.213 4.213 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.421 0.579 33 H 0.417 0.583 34 H 0.394 0.606 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.254 0.746 41 H 0.022 0.978 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 19.349 3.549 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 C -0.226 4.226 4 C 0.005 3.995 5 C -0.860 4.860 6 S 2.791 3.209 7 N -0.920 5.920 8 O -0.958 6.958 9 O -0.949 6.949 10 C 0.208 3.792 11 N -0.360 5.360 12 C 0.047 3.953 13 C -0.187 4.187 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.048 3.952 25 C -0.189 4.189 26 C -0.236 4.236 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.250 0.750 33 H 0.245 0.755 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.121 19.352 2.591 19.525 hybrid contribution 0.171 -1.110 0.929 1.458 sum 0.050 18.242 3.521 18.578 Atomic orbital electron populations 1.20943 0.90881 1.03305 1.02894 1.19969 0.95967 0.92694 0.90217 1.20829 0.93895 0.97523 1.10326 1.20574 0.94425 0.95613 0.88935 1.29941 1.25480 0.98132 1.32409 1.01376 0.73646 0.73166 0.72664 1.53363 1.69505 1.27343 1.41832 1.93551 1.82019 1.33915 1.86322 1.93627 1.81135 1.65426 1.54758 1.17286 0.91992 0.84248 0.85704 1.45830 1.08626 1.03673 1.77906 1.21203 0.95668 0.81098 0.97290 1.22534 1.01326 0.99222 0.95632 1.20863 0.92417 0.87845 0.96832 1.44087 1.59504 1.13339 1.14502 1.19212 1.42909 0.84850 0.91564 0.91578 1.25054 1.00469 0.97371 0.96564 1.70020 1.47818 1.29114 1.07603 0.86232 0.79115 0.82891 0.78566 1.20248 1.21679 1.21497 1.20758 0.96077 0.92141 0.86219 1.22564 0.99427 0.97242 0.99707 1.20727 0.91928 0.98766 1.12146 0.90374 0.91093 0.90905 0.85755 0.84429 0.74952 0.75538 0.76848 0.90231 0.91858 0.92646 0.96334 0.92390 0.93556 0.96033 0.88875 0.92159 0.91979 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.01 36.01 0.36 -0.65 16 2 C 0.01 0.14 5.88 -104.65 -0.62 -0.47 16 3 C -0.20 -2.17 9.70 -39.55 -0.38 -2.56 16 4 C 0.02 0.28 9.54 -39.61 -0.38 -0.10 16 5 C -0.76 -9.60 5.92 -39.38 -0.23 -9.83 16 6 S 2.70 32.31 5.55 -107.50 -0.60 31.71 16 7 N -1.25 -10.50 9.47 60.35 0.57 -9.93 16 8 O -0.97 -13.28 16.97 -57.17 -0.97 -14.25 16 9 O -0.96 -14.60 16.29 -57.17 -0.93 -15.53 16 10 C 0.32 4.29 6.59 -83.79 -0.55 3.74 16 11 N -0.73 -10.22 5.06 -52.12 -0.26 -10.48 16 12 C 0.15 2.36 2.11 -67.89 -0.14 2.21 16 13 C -0.15 -2.30 5.59 -26.61 -0.15 -2.45 16 14 C 0.15 2.84 6.52 -3.71 -0.02 2.81 16 15 N -0.59 -13.91 2.99 -172.32 -0.52 -14.42 16 16 C -0.26 -6.71 9.58 -15.06 -0.14 -6.86 16 17 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 19 N -0.90 -25.30 11.19 55.49 0.62 -24.68 16 20 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 25 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 26 C -0.21 -2.71 8.49 -39.38 -0.33 -3.05 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.37 7.33 -52.49 -0.38 0.98 16 32 H 0.42 2.57 8.96 -34.47 -0.31 2.26 16 33 H 0.42 3.25 8.05 -34.47 -0.28 2.97 16 34 H 0.39 5.30 5.04 -40.82 -0.21 5.10 16 35 H 0.08 1.26 6.48 -51.93 -0.34 0.92 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.77 7.73 -51.93 -0.40 0.36 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.13 1.69 6.14 -52.49 -0.32 1.37 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -32.65 367.16 -10.74 -43.40 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.31 Total: 8.74 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.85 Total: -16.10 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.41 Total: -59.51 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.90 Total: -29.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: 32.31 SS G_CDS: -0.60 Total: 31.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.65 -10.74 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601113100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds