Wall clock time and date at job start Tue Mar 31 2020 22:54:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38301 * 119.96141 * 2 1
4 4 C 1.38271 * 120.14732 * 179.72192 * 3 2 1
5 5 C 1.38132 * 120.07428 * 0.51199 * 4 3 2
6 6 S 1.76192 * 120.03740 * 179.76558 * 5 4 3
7 7 N 1.65602 * 107.21802 * 114.72399 * 6 5 4
8 8 O 1.42104 * 106.40354 * 1.18500 * 6 5 4
9 9 O 1.42098 * 106.40441 * 228.26274 * 6 5 4
10 10 C 1.38890 * 119.92203 * 359.48977 * 5 4 3
11 11 N 1.39671 * 120.07152 * 180.27616 * 10 5 4
12 12 C 1.46509 * 119.99781 * 179.97438 * 11 10 5
13 13 C 1.53036 * 109.45901 * 275.06589 * 12 11 10
14 14 C 1.53194 * 109.31013 * 178.61212 * 13 12 11
15 15 N 1.46924 * 108.77364 * 54.63836 * 14 13 12
16 16 C 1.36939 * 120.63160 * 126.36439 * 15 14 13
17 17 H 1.07997 * 119.99959 * 331.87071 * 16 15 14
18 18 C 1.38813 * 120.00006 * 151.86421 * 16 15 14
19 19 N 1.31616 * 120.00217 * 343.06578 * 18 16 15
20 20 Si 1.86799 * 120.00104 * 163.06666 * 18 16 15
21 21 H 1.48502 * 109.47003 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47611 * 119.99763 * 20 18 16
23 23 H 1.48502 * 109.47381 * 240.00149 * 20 18 16
24 24 C 1.46929 * 118.74030 * 306.39306 * 15 14 13
25 25 C 1.53041 * 109.45592 * 154.99799 * 12 11 10
26 26 C 1.38090 * 119.95912 * 179.97438 * 2 1 3
27 27 H 1.09002 * 109.46942 * 270.02092 * 1 2 3
28 28 H 1.08998 * 109.46800 * 30.02139 * 1 2 3
29 29 H 1.09001 * 109.46754 * 150.02160 * 1 2 3
30 30 H 1.07996 * 119.92882 * 359.97438 * 3 2 1
31 31 H 1.07993 * 119.96400 * 180.27438 * 4 3 2
32 32 H 0.97005 * 119.99622 * 240.00257 * 7 6 5
33 33 H 0.96996 * 120.00392 * 59.71721 * 7 6 5
34 34 H 0.96999 * 120.00221 * 0.02562 * 11 10 5
35 35 H 1.08994 * 109.45828 * 35.03138 * 12 11 10
36 36 H 1.08995 * 109.50143 * 298.56895 * 13 12 11
37 37 H 1.09004 * 109.49331 * 58.66754 * 13 12 11
38 38 H 1.08994 * 109.58950 * 294.85110 * 14 13 12
39 39 H 1.09003 * 109.70372 * 174.49214 * 14 13 12
40 40 H 0.96995 * 120.00192 * 179.97438 * 19 18 16
41 41 H 1.09002 * 109.58158 * 293.81542 * 24 15 14
42 42 H 1.09000 * 109.70256 * 173.46676 * 24 15 14
43 43 H 1.08997 * 109.50217 * 301.33606 * 25 12 11
44 44 H 1.09003 * 109.49453 * 61.40327 * 25 12 11
45 45 H 1.07997 * 120.03867 * 0.04114 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1977 1.1982 0.0000
4 6 3.5804 1.2027 0.0058
5 6 4.2766 0.0096 0.0009
6 16 6.0385 0.0165 0.0021
7 7 6.5303 -0.6496 1.4363
8 8 6.4344 1.3808 0.0366
9 8 6.4440 -0.8849 -1.0188
10 6 3.5860 -1.1954 0.0009
11 7 4.2867 -2.4037 0.0018
12 6 3.5566 -3.6739 0.0024
13 6 3.1917 -4.0515 1.4398
14 6 2.3985 -5.3621 1.4335
15 7 3.1783 -6.3833 0.7207
16 6 3.4535 -7.5883 1.3100
17 1 3.5235 -7.6601 2.3853
18 6 3.6424 -8.7177 0.5253
19 7 3.2396 -8.7233 -0.7277
20 14 4.4682 -10.2295 1.2475
21 1 4.8250 -9.9689 2.6653
22 1 3.5374 -11.3843 1.1752
23 1 5.6995 -10.5371 0.4763
24 6 3.6577 -6.0867 -0.6361
25 6 4.4366 -4.7679 -0.6066
26 6 2.1966 -1.1964 0.0005
27 1 -0.3633 0.0004 1.0277
28 1 -0.3633 0.8898 -0.5142
29 1 -0.3633 -0.8902 -0.5135
30 1 1.6560 2.1324 -0.0004
31 1 4.1168 2.1400 0.0103
32 1 7.0726 -0.1310 2.0511
33 1 6.2727 -1.5567 1.6634
34 1 5.2567 -2.4018 0.0029
35 1 2.6463 -3.5697 -0.5878
36 1 4.1024 -4.1802 2.0246
37 1 2.5844 -3.2609 1.8806
38 1 1.4457 -5.2102 0.9266
39 1 2.2194 -5.6883 2.4580
40 1 3.3719 -9.5122 -1.2762
41 1 2.8074 -5.9939 -1.3118
42 1 4.3107 -6.8893 -0.9788
43 1 4.7154 -4.4873 -1.6223
44 1 5.3360 -4.8894 -0.0028
45 1 1.6566 -2.1317 0.0003
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601113100.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:54:59
Heat of formation + Delta-G solvation = -57.858674 kcal
Electronic energy + Delta-G solvation = -28208.443733 eV
Core-core repulsion = 24351.777878 eV
Total energy + Delta-G solvation = -3856.665855 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.96494 -39.30137 -38.40044 -37.00564 -36.69288 -34.54305 -34.11062 -33.45669
-32.12018 -31.34155 -29.71067 -28.22702 -26.73092 -24.22408 -23.95425 -22.92170
-22.36476 -21.06118 -20.48765 -19.20008 -18.82833 -18.50256 -17.98403 -17.26536
-17.21274 -16.77409 -16.04836 -15.68113 -15.56848 -15.38760 -15.27132 -15.10459
-15.01949 -14.72751 -14.45929 -13.92109 -13.52091 -13.36001 -13.31331 -13.24670
-13.16888 -13.11170 -13.06714 -12.99371 -12.65099 -12.55472 -12.34090 -12.11079
-12.02189 -11.91939 -11.84458 -11.63483 -11.33010 -11.27125 -10.90119 -10.55009
-10.04243 -8.70983 -8.66955 -7.88568 -5.33411 -0.58235 -0.03897 0.57130
1.46374 1.49438 1.58779 2.05493 2.23638 2.51249 2.55247 2.77486
3.28287 3.37429 3.66051 3.75869 3.87375 3.93142 4.00428 4.26099
4.29952 4.37818 4.44990 4.54640 4.65118 4.71003 4.76505 4.81991
4.84679 4.94794 4.96798 5.05613 5.10418 5.12296 5.15522 5.20456
5.28845 5.32400 5.47492 5.61993 5.64980 5.69159 5.81878 6.08656
6.23711 6.38954 6.46745 7.14331 7.85019 8.36199 9.18422
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015177 B = 0.003296 C = 0.002875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1844.422555 B = 8493.693134 C = 9737.576187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.012 3.988
3 C -0.201 4.201
4 C 0.014 3.986
5 C -0.769 4.769
6 S 2.722 3.278
7 N -1.234 6.234
8 O -0.986 6.986
9 O -0.995 6.995
10 C 0.302 3.698
11 N -0.736 5.736
12 C 0.163 3.837
13 C -0.131 4.131
14 C 0.144 3.856
15 N -0.609 5.609
16 C -0.261 4.261
17 H 0.069 0.931
18 C -0.048 4.048
19 N -0.934 5.934
20 Si 0.964 3.036
21 H -0.266 1.266
22 H -0.293 1.293
23 H -0.292 1.292
24 C 0.182 3.818
25 C -0.138 4.138
26 C -0.229 4.229
27 H 0.091 0.909
28 H 0.088 0.912
29 H 0.071 0.929
30 H 0.153 0.847
31 H 0.152 0.848
32 H 0.433 0.567
33 H 0.423 0.577
34 H 0.396 0.604
35 H 0.078 0.922
36 H 0.064 0.936
37 H 0.081 0.919
38 H 0.019 0.981
39 H 0.059 0.941
40 H 0.250 0.750
41 H 0.002 0.998
42 H 0.058 0.942
43 H 0.065 0.935
44 H 0.062 0.938
45 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.988 21.473 4.987 22.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.011 3.989
3 C -0.222 4.222
4 C -0.006 4.006
5 C -0.864 4.864
6 S 2.811 3.189
7 N -0.910 5.910
8 O -0.976 6.976
9 O -0.984 6.984
10 C 0.193 3.807
11 N -0.363 5.363
12 C 0.059 3.941
13 C -0.171 4.171
14 C 0.018 3.982
15 N -0.332 5.332
16 C -0.392 4.392
17 H 0.086 0.914
18 C -0.244 4.244
19 N -0.580 5.580
20 Si 0.792 3.208
21 H -0.190 1.190
22 H -0.221 1.221
23 H -0.219 1.219
24 C 0.056 3.944
25 C -0.178 4.178
26 C -0.252 4.252
27 H 0.109 0.891
28 H 0.107 0.893
29 H 0.090 0.910
30 H 0.171 0.829
31 H 0.169 0.831
32 H 0.266 0.734
33 H 0.252 0.748
34 H 0.234 0.766
35 H 0.096 0.904
36 H 0.082 0.918
37 H 0.099 0.901
38 H 0.037 0.963
39 H 0.078 0.922
40 H 0.059 0.941
41 H 0.020 0.980
42 H 0.076 0.924
43 H 0.084 0.916
44 H 0.081 0.919
45 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -0.561 21.530 4.061 21.917
hybrid contribution 0.222 -1.651 0.505 1.740
sum -0.339 19.879 4.567 20.400
Atomic orbital electron populations
1.21013 0.88825 1.04159 1.03934 1.20333 0.97534 0.92210 0.88867
1.21216 0.93704 0.98612 1.08634 1.20886 0.95168 0.95771 0.88750
1.29969 1.25513 0.98307 1.32628 1.00597 0.73339 0.72303 0.72710
1.53005 1.69365 1.27630 1.41011 1.93520 1.82381 1.34935 1.86801
1.93587 1.81800 1.66230 1.56824 1.17411 0.92405 0.84066 0.86820
1.45520 1.08523 1.03195 1.79093 1.20871 0.95049 0.81197 0.96974
1.22335 1.01151 0.97752 0.95836 1.21019 0.92542 0.88400 0.96267
1.44319 1.60522 1.13569 1.14803 1.19541 1.41850 0.85933 0.91843
0.91362 1.25758 1.01563 1.00054 0.96990 1.70166 1.49461 1.29563
1.08820 0.85267 0.77684 0.79541 0.78300 1.19001 1.22065 1.21899
1.20496 0.95050 0.93247 0.85632 1.22321 0.99124 0.95868 1.00455
1.20880 0.91789 0.99544 1.13010 0.89081 0.89320 0.91041 0.82910
0.83063 0.73440 0.74812 0.76650 0.90389 0.91756 0.90073 0.96297
0.92232 0.94134 0.98039 0.92409 0.91631 0.91935 0.85003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.63 10.01 71.24 0.71 -0.92 16
2 C 0.01 0.23 5.88 -19.88 -0.12 0.11 16
3 C -0.20 -3.63 9.70 22.29 0.22 -3.41 16
4 C 0.01 0.29 9.54 22.25 0.21 0.50 16
5 C -0.77 -18.01 5.92 22.40 0.13 -17.88 16
6 S 2.72 61.86 5.55 -56.49 -0.31 61.54 16
7 N -1.23 -18.69 9.47 37.02 0.35 -18.34 16
8 O -0.99 -25.74 16.97 -128.00 -2.17 -27.91 16
9 O -1.00 -29.74 16.29 -128.00 -2.09 -31.83 16
10 C 0.30 7.66 6.59 38.21 0.25 7.91 16
11 N -0.74 -19.59 5.06 -318.82 -1.61 -21.20 16
12 C 0.16 4.96 2.11 45.02 0.09 5.05 16
13 C -0.13 -3.88 5.59 30.67 0.17 -3.70 16
14 C 0.14 5.43 6.52 86.36 0.56 5.99 16
15 N -0.61 -28.92 2.99 -699.09 -2.09 -31.02 16
16 C -0.26 -13.83 9.58 84.03 0.81 -13.03 16
17 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16
18 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16
19 N -0.93 -54.08 11.19 21.65 0.24 -53.84 16
20 Si 0.96 43.86 29.59 68.60 2.03 45.89 16
21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16
23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16
24 C 0.18 8.45 5.30 86.36 0.46 8.91 16
25 C -0.14 -5.00 5.55 30.67 0.17 -4.83 16
26 C -0.23 -5.42 8.49 22.40 0.19 -5.23 16
27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16
28 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16
29 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16
30 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16
31 H 0.15 2.64 7.33 -2.91 -0.02 2.62 16
32 H 0.43 4.45 8.96 -96.74 -0.87 3.58 16
33 H 0.42 5.84 8.05 -96.75 -0.78 5.06 16
34 H 0.40 10.24 5.04 -92.71 -0.47 9.77 16
35 H 0.08 2.41 6.48 -2.39 -0.02 2.40 16
36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
37 H 0.08 2.03 7.73 -2.38 -0.02 2.01 16
38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
39 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16
40 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16
41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16
42 H 0.06 3.08 6.06 -2.39 -0.01 3.07 16
43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
45 H 0.13 3.11 6.14 -2.91 -0.02 3.10 16
Total: -1.00 -70.76 367.16 -2.45 -73.20
By element:
Atomic # 1 Polarization: 27.28 SS G_CDS: -1.07 Total: 26.21 kcal
Atomic # 6 Polarization: -27.00 SS G_CDS: 4.28 Total: -22.72 kcal
Atomic # 7 Polarization: -121.29 SS G_CDS: -3.11 Total: -124.40 kcal
Atomic # 8 Polarization: -55.48 SS G_CDS: -4.26 Total: -59.74 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Atomic # 16 Polarization: 61.86 SS G_CDS: -0.31 Total: 61.54 kcal
Total: -70.76 -2.45 -73.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601113100.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.346 kcal
(2) G-P(sol) polarization free energy of solvation -70.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.412 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.447 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.859 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds