Wall clock time and date at job start Tue Mar 31 2020 22:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38301 * 119.96141 * 2 1 4 4 C 1.38271 * 120.14732 * 179.72192 * 3 2 1 5 5 C 1.38132 * 120.07428 * 0.51199 * 4 3 2 6 6 S 1.76192 * 120.03740 * 179.76558 * 5 4 3 7 7 N 1.65602 * 107.21802 * 114.72399 * 6 5 4 8 8 O 1.42104 * 106.40354 * 1.18500 * 6 5 4 9 9 O 1.42098 * 106.40441 * 228.26274 * 6 5 4 10 10 C 1.38890 * 119.92203 * 359.48977 * 5 4 3 11 11 N 1.39671 * 120.07152 * 180.27616 * 10 5 4 12 12 C 1.46509 * 119.99781 * 179.97438 * 11 10 5 13 13 C 1.53036 * 109.45901 * 275.06589 * 12 11 10 14 14 C 1.53194 * 109.31013 * 178.61212 * 13 12 11 15 15 N 1.46924 * 108.77364 * 54.63836 * 14 13 12 16 16 C 1.36939 * 120.63160 * 126.36439 * 15 14 13 17 17 H 1.07997 * 119.99959 * 331.87071 * 16 15 14 18 18 C 1.38813 * 120.00006 * 151.86421 * 16 15 14 19 19 N 1.31616 * 120.00217 * 343.06578 * 18 16 15 20 20 Si 1.86799 * 120.00104 * 163.06666 * 18 16 15 21 21 H 1.48502 * 109.47003 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47611 * 119.99763 * 20 18 16 23 23 H 1.48502 * 109.47381 * 240.00149 * 20 18 16 24 24 C 1.46929 * 118.74030 * 306.39306 * 15 14 13 25 25 C 1.53041 * 109.45592 * 154.99799 * 12 11 10 26 26 C 1.38090 * 119.95912 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46942 * 270.02092 * 1 2 3 28 28 H 1.08998 * 109.46800 * 30.02139 * 1 2 3 29 29 H 1.09001 * 109.46754 * 150.02160 * 1 2 3 30 30 H 1.07996 * 119.92882 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.96400 * 180.27438 * 4 3 2 32 32 H 0.97005 * 119.99622 * 240.00257 * 7 6 5 33 33 H 0.96996 * 120.00392 * 59.71721 * 7 6 5 34 34 H 0.96999 * 120.00221 * 0.02562 * 11 10 5 35 35 H 1.08994 * 109.45828 * 35.03138 * 12 11 10 36 36 H 1.08995 * 109.50143 * 298.56895 * 13 12 11 37 37 H 1.09004 * 109.49331 * 58.66754 * 13 12 11 38 38 H 1.08994 * 109.58950 * 294.85110 * 14 13 12 39 39 H 1.09003 * 109.70372 * 174.49214 * 14 13 12 40 40 H 0.96995 * 120.00192 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58158 * 293.81542 * 24 15 14 42 42 H 1.09000 * 109.70256 * 173.46676 * 24 15 14 43 43 H 1.08997 * 109.50217 * 301.33606 * 25 12 11 44 44 H 1.09003 * 109.49453 * 61.40327 * 25 12 11 45 45 H 1.07997 * 120.03867 * 0.04114 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2027 0.0058 5 6 4.2766 0.0096 0.0009 6 16 6.0385 0.0165 0.0021 7 7 6.5303 -0.6496 1.4363 8 8 6.4344 1.3808 0.0366 9 8 6.4440 -0.8849 -1.0188 10 6 3.5860 -1.1954 0.0009 11 7 4.2867 -2.4037 0.0018 12 6 3.5566 -3.6739 0.0024 13 6 3.1917 -4.0515 1.4398 14 6 2.3985 -5.3621 1.4335 15 7 3.1783 -6.3833 0.7207 16 6 3.4535 -7.5883 1.3100 17 1 3.5235 -7.6601 2.3853 18 6 3.6424 -8.7177 0.5253 19 7 3.2396 -8.7233 -0.7277 20 14 4.4682 -10.2295 1.2475 21 1 4.8250 -9.9689 2.6653 22 1 3.5374 -11.3843 1.1752 23 1 5.6995 -10.5371 0.4763 24 6 3.6577 -6.0867 -0.6361 25 6 4.4366 -4.7679 -0.6066 26 6 2.1966 -1.1964 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6560 2.1324 -0.0004 31 1 4.1168 2.1400 0.0103 32 1 7.0726 -0.1310 2.0511 33 1 6.2727 -1.5567 1.6634 34 1 5.2567 -2.4018 0.0029 35 1 2.6463 -3.5697 -0.5878 36 1 4.1024 -4.1802 2.0246 37 1 2.5844 -3.2609 1.8806 38 1 1.4457 -5.2102 0.9266 39 1 2.2194 -5.6883 2.4580 40 1 3.3719 -9.5122 -1.2762 41 1 2.8074 -5.9939 -1.3118 42 1 4.3107 -6.8893 -0.9788 43 1 4.7154 -4.4873 -1.6223 44 1 5.3360 -4.8894 -0.0028 45 1 1.6566 -2.1317 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601113100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:59 Heat of formation + Delta-G solvation = -57.858674 kcal Electronic energy + Delta-G solvation = -28208.443733 eV Core-core repulsion = 24351.777878 eV Total energy + Delta-G solvation = -3856.665855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96494 -39.30137 -38.40044 -37.00564 -36.69288 -34.54305 -34.11062 -33.45669 -32.12018 -31.34155 -29.71067 -28.22702 -26.73092 -24.22408 -23.95425 -22.92170 -22.36476 -21.06118 -20.48765 -19.20008 -18.82833 -18.50256 -17.98403 -17.26536 -17.21274 -16.77409 -16.04836 -15.68113 -15.56848 -15.38760 -15.27132 -15.10459 -15.01949 -14.72751 -14.45929 -13.92109 -13.52091 -13.36001 -13.31331 -13.24670 -13.16888 -13.11170 -13.06714 -12.99371 -12.65099 -12.55472 -12.34090 -12.11079 -12.02189 -11.91939 -11.84458 -11.63483 -11.33010 -11.27125 -10.90119 -10.55009 -10.04243 -8.70983 -8.66955 -7.88568 -5.33411 -0.58235 -0.03897 0.57130 1.46374 1.49438 1.58779 2.05493 2.23638 2.51249 2.55247 2.77486 3.28287 3.37429 3.66051 3.75869 3.87375 3.93142 4.00428 4.26099 4.29952 4.37818 4.44990 4.54640 4.65118 4.71003 4.76505 4.81991 4.84679 4.94794 4.96798 5.05613 5.10418 5.12296 5.15522 5.20456 5.28845 5.32400 5.47492 5.61993 5.64980 5.69159 5.81878 6.08656 6.23711 6.38954 6.46745 7.14331 7.85019 8.36199 9.18422 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003296 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.422555 B = 8493.693134 C = 9737.576187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.012 3.988 3 C -0.201 4.201 4 C 0.014 3.986 5 C -0.769 4.769 6 S 2.722 3.278 7 N -1.234 6.234 8 O -0.986 6.986 9 O -0.995 6.995 10 C 0.302 3.698 11 N -0.736 5.736 12 C 0.163 3.837 13 C -0.131 4.131 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.182 3.818 25 C -0.138 4.138 26 C -0.229 4.229 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.433 0.567 33 H 0.423 0.577 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.019 0.981 39 H 0.059 0.941 40 H 0.250 0.750 41 H 0.002 0.998 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 21.473 4.987 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.222 4.222 4 C -0.006 4.006 5 C -0.864 4.864 6 S 2.811 3.189 7 N -0.910 5.910 8 O -0.976 6.976 9 O -0.984 6.984 10 C 0.193 3.807 11 N -0.363 5.363 12 C 0.059 3.941 13 C -0.171 4.171 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.086 0.914 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.056 3.944 25 C -0.178 4.178 26 C -0.252 4.252 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.266 0.734 33 H 0.252 0.748 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.561 21.530 4.061 21.917 hybrid contribution 0.222 -1.651 0.505 1.740 sum -0.339 19.879 4.567 20.400 Atomic orbital electron populations 1.21013 0.88825 1.04159 1.03934 1.20333 0.97534 0.92210 0.88867 1.21216 0.93704 0.98612 1.08634 1.20886 0.95168 0.95771 0.88750 1.29969 1.25513 0.98307 1.32628 1.00597 0.73339 0.72303 0.72710 1.53005 1.69365 1.27630 1.41011 1.93520 1.82381 1.34935 1.86801 1.93587 1.81800 1.66230 1.56824 1.17411 0.92405 0.84066 0.86820 1.45520 1.08523 1.03195 1.79093 1.20871 0.95049 0.81197 0.96974 1.22335 1.01151 0.97752 0.95836 1.21019 0.92542 0.88400 0.96267 1.44319 1.60522 1.13569 1.14803 1.19541 1.41850 0.85933 0.91843 0.91362 1.25758 1.01563 1.00054 0.96990 1.70166 1.49461 1.29563 1.08820 0.85267 0.77684 0.79541 0.78300 1.19001 1.22065 1.21899 1.20496 0.95050 0.93247 0.85632 1.22321 0.99124 0.95868 1.00455 1.20880 0.91789 0.99544 1.13010 0.89081 0.89320 0.91041 0.82910 0.83063 0.73440 0.74812 0.76650 0.90389 0.91756 0.90073 0.96297 0.92232 0.94134 0.98039 0.92409 0.91631 0.91935 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 10.01 71.24 0.71 -0.92 16 2 C 0.01 0.23 5.88 -19.88 -0.12 0.11 16 3 C -0.20 -3.63 9.70 22.29 0.22 -3.41 16 4 C 0.01 0.29 9.54 22.25 0.21 0.50 16 5 C -0.77 -18.01 5.92 22.40 0.13 -17.88 16 6 S 2.72 61.86 5.55 -56.49 -0.31 61.54 16 7 N -1.23 -18.69 9.47 37.02 0.35 -18.34 16 8 O -0.99 -25.74 16.97 -128.00 -2.17 -27.91 16 9 O -1.00 -29.74 16.29 -128.00 -2.09 -31.83 16 10 C 0.30 7.66 6.59 38.21 0.25 7.91 16 11 N -0.74 -19.59 5.06 -318.82 -1.61 -21.20 16 12 C 0.16 4.96 2.11 45.02 0.09 5.05 16 13 C -0.13 -3.88 5.59 30.67 0.17 -3.70 16 14 C 0.14 5.43 6.52 86.36 0.56 5.99 16 15 N -0.61 -28.92 2.99 -699.09 -2.09 -31.02 16 16 C -0.26 -13.83 9.58 84.03 0.81 -13.03 16 17 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 18 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 19 N -0.93 -54.08 11.19 21.65 0.24 -53.84 16 20 Si 0.96 43.86 29.59 68.60 2.03 45.89 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.18 8.45 5.30 86.36 0.46 8.91 16 25 C -0.14 -5.00 5.55 30.67 0.17 -4.83 16 26 C -0.23 -5.42 8.49 22.40 0.19 -5.23 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 29 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.15 2.64 7.33 -2.91 -0.02 2.62 16 32 H 0.43 4.45 8.96 -96.74 -0.87 3.58 16 33 H 0.42 5.84 8.05 -96.75 -0.78 5.06 16 34 H 0.40 10.24 5.04 -92.71 -0.47 9.77 16 35 H 0.08 2.41 6.48 -2.39 -0.02 2.40 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.03 7.73 -2.38 -0.02 2.01 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 40 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.06 3.08 6.06 -2.39 -0.01 3.07 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.13 3.11 6.14 -2.91 -0.02 3.10 16 Total: -1.00 -70.76 367.16 -2.45 -73.20 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -1.07 Total: 26.21 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.28 Total: -22.72 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -3.11 Total: -124.40 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -4.26 Total: -59.74 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 61.86 SS G_CDS: -0.31 Total: 61.54 kcal Total: -70.76 -2.45 -73.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601113100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.346 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds