Wall clock time and date at job start Tue Mar 31 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.42093 * 110.54547 * 291.62539 * 11 10 9 13 13 O 1.42105 * 110.53941 * 68.37879 * 11 10 9 14 14 N 1.65595 * 104.44822 * 179.97438 * 11 10 9 15 15 C 1.50241 * 120.55156 * 90.00307 * 14 11 10 16 16 C 1.46645 * 106.98450 * 111.48416 * 15 14 11 17 17 C 1.52468 * 114.11678 * 58.14115 * 16 15 14 18 18 N 1.43917 * 105.41247 * 269.64618 * 17 16 15 19 19 C 1.39174 * 110.99603 * 223.42262 * 18 17 16 20 20 C 1.39474 * 120.86216 * 123.67535 * 19 18 17 21 21 C 1.37900 * 119.06514 * 179.73040 * 20 19 18 22 22 N 1.31988 * 120.84293 * 0.55327 * 21 20 19 23 23 C 1.31997 * 121.91127 * 359.72323 * 22 21 20 24 24 C 1.37900 * 120.84034 * 359.97438 * 23 22 21 25 25 C 1.48822 * 112.04928 * 98.70414 * 18 17 16 26 26 C 1.43666 * 120.55415 * 269.72656 * 14 11 10 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.09000 * 109.95034 * 230.85405 * 15 14 11 33 33 H 1.09000 * 109.94650 * 352.02605 * 15 14 11 34 34 H 1.09000 * 108.55240 * 179.34137 * 16 15 14 35 35 H 1.09009 * 108.55103 * 297.08808 * 16 15 14 36 36 H 1.09008 * 110.24701 * 28.61299 * 17 16 15 37 37 H 1.08995 * 110.25356 * 150.52822 * 17 16 15 38 38 H 1.08004 * 120.46942 * 359.97438 * 20 19 18 39 39 H 1.08005 * 119.57389 * 180.25208 * 21 20 19 40 40 H 1.07994 * 119.58246 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.46578 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.23504 * 81.30501 * 25 18 17 43 43 H 1.09001 * 109.23370 * 200.68204 * 25 18 17 44 44 H 1.08999 * 108.14324 * 30.87867 * 26 14 11 45 45 H 1.09002 * 108.14020 * 147.40441 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5201 -6.3927 0.0005 15 6 3.0662 -6.9275 1.2940 16 6 2.6235 -8.3214 1.4021 17 6 3.0675 -9.2077 0.2437 18 7 2.0120 -9.1207 -0.7308 19 6 1.7149 -10.3743 -1.2573 20 6 0.4199 -10.8882 -1.1944 21 6 0.1658 -12.1320 -1.7329 22 7 1.1311 -12.8373 -2.2921 23 6 2.3702 -12.3884 -2.3662 24 6 2.7056 -11.1516 -1.8569 25 6 2.3291 -8.1493 -1.8127 26 6 3.0364 -6.9085 -1.2370 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1552 -6.8828 1.2847 33 1 2.6774 -6.3464 2.1302 34 1 3.0166 -8.7392 2.3290 35 1 1.5346 -8.3367 1.4504 36 1 4.0019 -8.8372 -0.1782 37 1 3.1886 -10.2370 0.5810 38 1 -0.3737 -10.3184 -0.7338 39 1 -0.8350 -12.5361 -1.6923 40 1 3.1309 -12.9974 -2.8317 41 1 3.7213 -10.7901 -1.9212 42 1 2.9791 -8.6275 -2.5455 43 1 1.4045 -7.8410 -2.3008 44 1 2.9824 -6.1163 -1.9837 45 1 4.0875 -7.1567 -1.0890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601518911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:00 Heat of formation + Delta-G solvation = -40.623309 kcal Electronic energy + Delta-G solvation = -27808.800408 eV Core-core repulsion = 23952.881934 eV Total energy + Delta-G solvation = -3855.918473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63020 -39.79764 -38.17261 -36.96679 -36.63433 -35.89312 -33.72460 -33.11988 -32.29149 -31.99409 -28.46484 -27.56160 -27.11130 -24.47792 -23.87679 -23.55149 -22.64985 -21.39728 -19.72593 -19.10830 -18.60219 -18.10468 -17.49432 -17.30575 -17.03349 -16.63460 -16.56976 -16.47121 -15.95488 -15.61085 -15.11123 -14.87143 -14.67838 -14.55083 -14.46501 -14.40683 -14.19524 -13.72826 -13.68086 -13.35853 -13.12617 -13.06838 -12.95118 -12.79259 -12.77129 -12.30742 -12.26773 -12.12447 -12.06810 -11.82170 -11.76852 -11.59897 -11.09983 -10.66650 -10.53526 -10.48681 -10.12553 -9.92469 -9.43790 -8.26797 -6.41177 -0.67248 0.16049 0.22463 1.40613 1.41389 1.54705 1.79195 2.37585 2.69350 2.85255 2.94414 3.06562 3.22289 3.58009 3.61941 3.85025 3.95794 4.01661 4.05558 4.08973 4.09694 4.15158 4.22916 4.36371 4.45084 4.52455 4.55006 4.59762 4.74666 4.76852 4.82783 4.88688 4.91792 4.97278 5.08760 5.20074 5.26047 5.27066 5.30406 5.45294 5.65303 5.67797 5.77486 6.02925 6.05362 6.37571 6.73140 7.01991 7.29286 8.85780 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.002495 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.308870 B =11219.472376 C =11397.975797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.589 4.589 11 S 2.611 3.389 12 O -0.996 6.996 13 O -0.994 6.994 14 N -0.984 5.984 15 C 0.122 3.878 16 C -0.136 4.136 17 C 0.066 3.934 18 N -0.523 5.523 19 C 0.130 3.870 20 C -0.169 4.169 21 C 0.100 3.900 22 N -0.517 5.517 23 C 0.101 3.899 24 C -0.199 4.199 25 C 0.040 3.960 26 C 0.118 3.882 27 H 0.267 0.733 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.132 0.868 39 H 0.174 0.826 40 H 0.179 0.821 41 H 0.156 0.844 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -23.402 -1.411 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.720 4.720 11 S 2.708 3.292 12 O -0.987 6.987 13 O -0.984 6.984 14 N -0.823 5.823 15 C -0.001 4.001 16 C -0.175 4.175 17 C -0.060 4.060 18 N -0.245 5.245 19 C 0.028 3.972 20 C -0.190 4.190 21 C -0.057 4.057 22 N -0.227 5.227 23 C -0.056 4.056 24 C -0.221 4.221 25 C -0.087 4.087 26 C -0.010 4.010 27 H 0.076 0.924 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.191 0.809 40 H 0.196 0.804 41 H 0.173 0.827 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.480 -24.109 -1.494 26.745 hybrid contribution 0.674 1.970 -0.047 2.083 sum 12.154 -22.139 -1.541 25.303 Atomic orbital electron populations 1.70121 1.08157 1.28278 1.51003 1.26161 0.95869 1.04024 0.94410 0.85243 0.79221 0.77878 0.77784 1.17721 1.20399 1.20389 1.21551 0.94009 0.90697 1.51298 0.90464 1.18811 0.93654 0.93339 0.96067 1.30404 1.12707 1.16693 1.12210 1.04823 0.75184 0.76408 0.72740 1.93475 1.72738 1.85687 1.46754 1.93483 1.72706 1.85608 1.46627 1.57567 1.58971 1.53123 1.12625 1.21252 1.00967 0.94658 0.83187 1.20837 1.01943 0.95398 0.99359 1.21744 0.92577 1.00160 0.91560 1.59250 1.44326 1.05372 1.15505 1.19439 0.93740 0.90560 0.93464 1.22281 0.97412 0.97486 1.01815 1.22988 0.99288 0.90699 0.92692 1.67754 1.01944 1.36510 1.16458 1.23083 0.93477 0.93773 0.95253 1.22892 1.01540 0.96929 1.00752 1.23350 1.00915 0.92335 0.92143 1.20897 0.99308 0.95638 0.85108 0.92402 0.97851 0.97858 0.84020 0.84069 0.86633 0.89668 0.88687 0.93307 0.89927 0.90281 0.84985 0.80931 0.80379 0.82656 0.90111 0.92440 0.89999 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.98 43.04 29.54 68.60 2.03 45.07 16 4 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.06 4.98 29.85 0.15 1.21 16 10 C -0.59 -21.90 6.12 71.98 0.44 -21.46 16 11 S 2.61 93.74 5.36 -56.49 -0.30 93.43 16 12 O -1.00 -42.18 16.80 -127.65 -2.14 -44.32 16 13 O -0.99 -41.80 17.08 -127.65 -2.18 -43.98 16 14 N -0.98 -23.16 2.97 -521.64 -1.55 -24.71 16 15 C 0.12 2.14 5.98 83.68 0.50 2.64 16 16 C -0.14 -2.34 5.33 28.45 0.15 -2.19 16 17 C 0.07 0.94 4.89 86.68 0.42 1.36 16 18 N -0.52 -10.44 3.99 -696.10 -2.78 -13.22 16 19 C 0.13 2.51 4.48 38.57 0.17 2.68 16 20 C -0.17 -3.50 10.06 22.49 0.23 -3.28 16 21 C 0.10 1.89 11.17 84.59 0.95 2.83 16 22 N -0.52 -10.34 10.36 -196.16 -2.03 -12.37 16 23 C 0.10 1.55 11.17 84.59 0.95 2.50 16 24 C -0.20 -2.87 8.45 22.49 0.19 -2.68 16 25 C 0.04 0.79 5.97 86.27 0.51 1.30 16 26 C 0.12 2.15 4.65 87.24 0.41 2.55 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 31 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.73 7.23 -2.39 -0.02 1.71 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.22 7.86 -2.38 -0.02 1.20 16 36 H 0.08 0.77 6.13 -2.38 -0.01 0.75 16 37 H 0.08 1.02 7.39 -2.39 -0.02 1.00 16 38 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.16 1.39 7.92 -2.91 -0.02 1.37 16 42 H 0.08 1.15 7.41 -2.38 -0.02 1.13 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.54 7.71 -2.39 -0.02 1.52 16 45 H 0.12 1.13 6.89 -2.39 -0.02 1.11 16 Total: -1.00 -81.18 374.27 -1.94 -83.12 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.98 Total: 15.80 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 5.76 Total: -41.84 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -6.08 Total: -107.28 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -4.32 Total: -88.31 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 93.74 SS G_CDS: -0.30 Total: 93.43 kcal Total: -81.18 -1.94 -83.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601518911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.501 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds