Wall clock time and date at job start Tue Mar 31 2020 22:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38079 * 119.96053 * 2 1 4 4 C 1.38543 * 120.41871 * 180.02562 * 3 2 1 5 5 C 1.37823 * 120.33921 * 0.23294 * 4 3 2 6 6 C 1.39705 * 119.91806 * 359.47325 * 5 4 3 7 7 C 1.47404 * 120.20489 * 180.27415 * 6 5 4 8 8 O 1.21625 * 120.00161 * 308.86855 * 7 6 5 9 9 N 1.34779 * 120.00055 * 128.87422 * 7 6 5 10 10 C 1.46504 * 120.00037 * 353.78374 * 9 7 6 11 11 C 1.36888 * 120.00088 * 173.79092 * 9 7 6 12 12 H 1.08000 * 120.00563 * 3.55092 * 11 9 7 13 13 C 1.39038 * 119.99824 * 183.55468 * 11 9 7 14 14 N 1.31368 * 120.00118 * 5.32477 * 13 11 9 15 15 Si 1.86804 * 119.99556 * 185.32648 * 13 11 9 16 16 H 1.48505 * 109.47338 * 60.00059 * 15 13 11 17 17 H 1.48497 * 109.46741 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47070 * 299.99650 * 15 13 11 19 19 C 1.38815 * 119.96967 * 179.97438 * 2 1 3 20 20 N 1.39200 * 120.16203 * 359.97438 * 19 2 1 21 21 C 1.34778 * 119.99772 * 127.03494 * 20 19 2 22 22 O 1.21517 * 120.00071 * 5.90080 * 21 20 19 23 23 C 1.48101 * 120.00046 * 185.90715 * 21 20 19 24 24 C 1.39840 * 120.92210 * 359.71203 * 23 21 20 25 25 C 1.38150 * 118.99637 * 179.77706 * 24 23 21 26 26 N 1.31814 * 120.89643 * 0.51240 * 25 24 23 27 27 C 1.31816 * 122.05490 * 359.74082 * 26 25 24 28 28 C 1.38134 * 120.89842 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46756 * 85.21125 * 1 2 3 30 30 H 1.09007 * 109.46729 * 205.20603 * 1 2 3 31 31 H 1.08989 * 109.47295 * 325.20449 * 1 2 3 32 32 H 1.08004 * 119.79071 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.82971 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.04060 * 179.74479 * 5 4 3 35 35 H 1.09004 * 109.46674 * 0.35422 * 10 9 7 36 36 H 1.09001 * 109.47128 * 120.34862 * 10 9 7 37 37 H 1.09000 * 109.47463 * 240.35450 * 10 9 7 38 38 H 0.97005 * 120.00244 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00516 * 307.02385 * 20 19 2 40 40 H 1.08000 * 120.50188 * 0.03017 * 24 23 21 41 41 H 1.07994 * 119.54825 * 180.23060 * 25 24 23 42 42 H 1.08001 * 119.54538 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.49861 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1963 0.0000 4 6 3.5820 1.2074 -0.0005 5 6 4.2876 0.0235 -0.0059 6 6 3.6043 -1.1950 0.0003 7 6 4.3527 -2.4649 0.0007 8 8 5.2275 -2.6556 -0.8225 9 7 4.0675 -3.4149 0.9132 10 6 3.1115 -3.1353 1.9875 11 6 4.6713 -4.6411 0.8363 12 1 5.4185 -4.8287 0.0794 13 6 4.3225 -5.6451 1.7327 14 7 3.3414 -5.4530 2.5850 15 14 5.2490 -7.2671 1.7250 16 1 6.6857 -7.0180 2.0066 17 1 4.6885 -8.1622 2.7689 18 1 5.1098 -7.9104 0.3939 19 6 2.2004 -1.2025 0.0005 20 7 1.5072 -2.4096 0.0016 21 6 1.7809 -3.3447 -0.9296 22 8 2.7039 -3.1803 -1.7028 23 6 0.9567 -4.5725 -1.0108 24 6 -0.1062 -4.7842 -0.1271 25 6 -0.8519 -5.9415 -0.2415 26 7 -0.5664 -6.8427 -1.1601 27 6 0.4296 -6.6849 -2.0090 28 6 1.2231 -5.5549 -1.9696 29 1 -0.3633 0.0858 -1.0241 30 1 -0.3633 -0.9299 0.4377 31 1 -0.3633 0.8438 0.5864 32 1 1.6525 2.1293 0.0004 33 1 4.1116 2.1485 -0.0009 34 1 5.3676 0.0378 -0.0105 35 1 2.7336 -2.1183 1.8819 36 1 2.2815 -3.8393 1.9276 37 1 3.6080 -3.2400 2.9522 38 1 3.0983 -6.1534 3.2106 39 1 0.8273 -2.5779 0.6726 40 1 -0.3433 -4.0520 0.6306 41 1 -1.6771 -6.1123 0.4339 42 1 0.6279 -7.4497 -2.7454 43 1 2.0372 -5.4322 -2.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725712984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:22 Heat of formation + Delta-G solvation = 33.679664 kcal Electronic energy + Delta-G solvation = -30781.911828 eV Core-core repulsion = 26793.771422 eV Total energy + Delta-G solvation = -3988.140406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.92573 -39.77699 -38.04477 -37.63410 -35.01446 -34.28932 -32.57216 -32.43498 -31.37702 -31.07826 -29.49577 -26.77239 -26.38900 -25.06326 -24.44045 -23.33102 -22.66713 -21.43153 -20.40434 -18.93769 -18.36742 -17.18043 -16.90302 -16.37330 -15.97125 -15.62767 -15.47186 -15.18264 -14.86429 -14.29375 -14.20961 -13.98256 -13.71495 -13.64709 -13.54685 -13.41220 -13.14540 -13.09302 -12.56716 -12.33661 -11.98495 -11.80083 -11.57265 -11.47476 -11.21055 -11.10949 -10.96803 -10.81519 -10.41838 -10.17900 -9.95073 -9.66731 -9.53881 -9.32221 -9.05147 -9.03382 -8.55521 -8.25737 -7.91369 -7.81990 -6.23600 -3.76206 0.91149 1.25088 1.46370 1.55927 3.15239 3.20308 3.22407 3.27224 3.30165 3.76991 4.09077 4.11973 4.25347 4.52620 4.72921 4.84634 4.88928 4.95961 5.06331 5.10517 5.23265 5.26489 5.34378 5.47467 5.60214 5.62209 5.69862 5.76938 5.83771 5.85949 5.96349 6.01250 6.23568 6.27032 6.35699 6.55996 6.59538 6.72404 6.75589 6.86250 7.03340 7.26679 7.33129 7.56377 7.60264 8.01590 8.08636 8.47847 8.53677 9.22772 9.46668 10.05388 10.69142 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009558 B = 0.006352 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.889960 B = 4407.094247 C = 6219.195550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C -0.111 4.111 4 C -0.127 4.127 5 C -0.082 4.082 6 C -0.075 4.075 7 C 0.493 3.507 8 O -0.576 6.576 9 N -0.443 5.443 10 C 0.114 3.886 11 C -0.286 4.286 12 H 0.102 0.898 13 C 0.026 3.974 14 N -0.888 5.888 15 Si 0.926 3.074 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.162 3.838 20 N -0.670 5.670 21 C 0.561 3.439 22 O -0.478 6.478 23 C -0.065 4.065 24 C -0.135 4.135 25 C 0.094 3.906 26 N -0.475 5.475 27 C 0.093 3.907 28 C -0.109 4.109 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.022 0.978 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.264 0.736 39 H 0.406 0.594 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.681 7.359 -1.054 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.130 4.130 4 C -0.145 4.145 5 C -0.101 4.101 6 C -0.081 4.081 7 C 0.282 3.718 8 O -0.461 6.461 9 N -0.162 5.162 10 C -0.029 4.029 11 C -0.414 4.414 12 H 0.119 0.881 13 C -0.175 4.175 14 N -0.530 5.530 15 Si 0.753 3.247 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 C 0.067 3.933 20 N -0.320 5.320 21 C 0.348 3.652 22 O -0.350 6.350 23 C -0.076 4.076 24 C -0.156 4.156 25 C -0.063 4.063 26 N -0.184 5.184 27 C -0.064 4.064 28 C -0.129 4.129 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.040 0.960 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.245 0.755 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.186 6.415 -1.931 13.039 hybrid contribution 0.670 -0.173 0.794 1.053 sum -10.516 6.243 -1.137 12.282 Atomic orbital electron populations 1.20655 0.91034 1.02325 1.02249 1.19719 0.95916 0.91807 1.03426 1.20807 0.94091 0.96607 1.01465 1.20993 0.94061 0.97752 1.01714 1.21096 1.00236 0.90712 0.98068 1.20373 0.92228 0.95860 0.99595 1.17416 0.86407 0.83627 0.84383 1.90603 1.34569 1.80072 1.40824 1.43490 1.37823 1.11181 1.23675 1.21941 0.94372 0.96100 0.90513 1.19713 1.19645 0.86779 1.15242 0.88065 1.25224 0.96715 0.99579 0.95960 1.70078 1.27506 1.33953 1.21432 0.85985 0.79663 0.81066 0.78010 1.19928 1.20917 1.19917 1.17284 0.89902 0.84683 1.01398 1.43092 1.41269 1.15123 1.32487 1.18125 0.83730 0.82466 0.80839 1.90927 1.26915 1.76295 1.40814 1.20204 0.95428 0.95318 0.96638 1.22239 0.95431 0.99499 0.98392 1.22621 0.98668 0.89435 0.95604 1.67503 1.16960 1.30232 1.03730 1.22704 0.90858 0.96040 0.96786 1.22300 0.99477 0.93146 0.97996 0.91293 0.92079 0.91374 0.85947 0.85900 0.85470 0.96003 0.90103 0.92974 0.92516 0.75518 0.84800 0.82447 0.82288 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.82 36.01 0.35 -0.73 16 2 C -0.11 -1.50 5.89 -104.47 -0.62 -2.12 16 3 C -0.11 -1.43 9.70 -39.53 -0.38 -1.82 16 4 C -0.13 -1.79 10.02 -39.62 -0.40 -2.19 16 5 C -0.08 -1.49 9.74 -39.19 -0.38 -1.87 16 6 C -0.08 -1.60 4.34 -104.81 -0.46 -2.05 16 7 C 0.49 12.90 4.13 -12.53 -0.05 12.84 16 8 O -0.58 -17.36 16.24 -10.78 -0.18 -17.54 16 9 N -0.44 -11.53 2.25 -123.43 -0.28 -11.81 16 10 C 0.11 2.58 6.81 59.85 0.41 2.99 16 11 C -0.29 -8.07 9.57 -15.00 -0.14 -8.22 16 12 H 0.10 3.08 7.17 -52.49 -0.38 2.71 16 13 C 0.03 0.69 5.44 -17.45 -0.09 0.60 16 14 N -0.89 -22.58 9.49 55.50 0.53 -22.05 16 15 Si 0.93 21.24 29.56 -169.99 -5.02 16.21 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 C 0.16 2.88 4.32 -83.49 -0.36 2.52 16 20 N -0.67 -11.37 2.18 -10.46 -0.02 -11.40 16 21 C 0.56 11.19 6.25 -12.21 -0.08 11.11 16 22 O -0.48 -11.72 13.26 -10.69 -0.14 -11.86 16 23 C -0.06 -1.13 5.91 -104.65 -0.62 -1.74 16 24 C -0.14 -1.91 9.61 -39.01 -0.38 -2.28 16 25 C 0.09 1.26 11.17 -17.59 -0.20 1.06 16 26 N -0.47 -7.15 10.33 -13.31 -0.14 -7.29 16 27 C 0.09 1.37 11.17 -17.60 -0.20 1.17 16 28 C -0.11 -1.83 9.68 -39.02 -0.38 -2.21 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.57 6.74 -51.93 -0.35 0.22 16 31 H 0.07 0.56 8.11 -51.94 -0.42 0.14 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 35 H 0.02 0.43 4.73 -51.93 -0.25 0.19 16 36 H 0.08 1.83 6.23 -51.93 -0.32 1.51 16 37 H 0.05 1.26 7.46 -51.93 -0.39 0.87 16 38 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 39 H 0.41 5.62 5.74 -40.82 -0.23 5.38 16 40 H 0.13 1.48 6.55 -52.49 -0.34 1.14 16 41 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.15 2.52 7.74 -52.48 -0.41 2.12 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -35.62 355.42 -8.62 -44.24 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.76 Total: 9.06 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -3.96 Total: 7.06 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.09 Total: -52.54 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.32 Total: -29.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.62 -8.62 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725712984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.925 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds