Wall clock time and date at job start Tue Mar 31 2020 22:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38079 * 119.96053 * 2 1 4 4 C 1.38543 * 120.41871 * 180.02562 * 3 2 1 5 5 C 1.37823 * 120.33921 * 0.23294 * 4 3 2 6 6 C 1.39705 * 119.91806 * 359.47325 * 5 4 3 7 7 C 1.47404 * 120.20489 * 180.27415 * 6 5 4 8 8 O 1.21625 * 120.00161 * 308.86855 * 7 6 5 9 9 N 1.34779 * 120.00055 * 128.87422 * 7 6 5 10 10 C 1.46504 * 120.00037 * 353.78374 * 9 7 6 11 11 C 1.36888 * 120.00088 * 173.79092 * 9 7 6 12 12 H 1.08000 * 120.00563 * 3.55092 * 11 9 7 13 13 C 1.39038 * 119.99824 * 183.55468 * 11 9 7 14 14 N 1.31368 * 120.00118 * 5.32477 * 13 11 9 15 15 Si 1.86804 * 119.99556 * 185.32648 * 13 11 9 16 16 H 1.48505 * 109.47338 * 60.00059 * 15 13 11 17 17 H 1.48497 * 109.46741 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47070 * 299.99650 * 15 13 11 19 19 C 1.38815 * 119.96967 * 179.97438 * 2 1 3 20 20 N 1.39200 * 120.16203 * 359.97438 * 19 2 1 21 21 C 1.34778 * 119.99772 * 127.03494 * 20 19 2 22 22 O 1.21517 * 120.00071 * 5.90080 * 21 20 19 23 23 C 1.48101 * 120.00046 * 185.90715 * 21 20 19 24 24 C 1.39840 * 120.92210 * 359.71203 * 23 21 20 25 25 C 1.38150 * 118.99637 * 179.77706 * 24 23 21 26 26 N 1.31814 * 120.89643 * 0.51240 * 25 24 23 27 27 C 1.31816 * 122.05490 * 359.74082 * 26 25 24 28 28 C 1.38134 * 120.89842 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46756 * 85.21125 * 1 2 3 30 30 H 1.09007 * 109.46729 * 205.20603 * 1 2 3 31 31 H 1.08989 * 109.47295 * 325.20449 * 1 2 3 32 32 H 1.08004 * 119.79071 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.82971 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.04060 * 179.74479 * 5 4 3 35 35 H 1.09004 * 109.46674 * 0.35422 * 10 9 7 36 36 H 1.09001 * 109.47128 * 120.34862 * 10 9 7 37 37 H 1.09000 * 109.47463 * 240.35450 * 10 9 7 38 38 H 0.97005 * 120.00244 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00516 * 307.02385 * 20 19 2 40 40 H 1.08000 * 120.50188 * 0.03017 * 24 23 21 41 41 H 1.07994 * 119.54825 * 180.23060 * 25 24 23 42 42 H 1.08001 * 119.54538 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.49861 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1963 0.0000 4 6 3.5820 1.2074 -0.0005 5 6 4.2876 0.0235 -0.0059 6 6 3.6043 -1.1950 0.0003 7 6 4.3527 -2.4649 0.0007 8 8 5.2275 -2.6556 -0.8225 9 7 4.0675 -3.4149 0.9132 10 6 3.1115 -3.1353 1.9875 11 6 4.6713 -4.6411 0.8363 12 1 5.4185 -4.8287 0.0794 13 6 4.3225 -5.6451 1.7327 14 7 3.3414 -5.4530 2.5850 15 14 5.2490 -7.2671 1.7250 16 1 6.6857 -7.0180 2.0066 17 1 4.6885 -8.1622 2.7689 18 1 5.1098 -7.9104 0.3939 19 6 2.2004 -1.2025 0.0005 20 7 1.5072 -2.4096 0.0016 21 6 1.7809 -3.3447 -0.9296 22 8 2.7039 -3.1803 -1.7028 23 6 0.9567 -4.5725 -1.0108 24 6 -0.1062 -4.7842 -0.1271 25 6 -0.8519 -5.9415 -0.2415 26 7 -0.5664 -6.8427 -1.1601 27 6 0.4296 -6.6849 -2.0090 28 6 1.2231 -5.5549 -1.9696 29 1 -0.3633 0.0858 -1.0241 30 1 -0.3633 -0.9299 0.4377 31 1 -0.3633 0.8438 0.5864 32 1 1.6525 2.1293 0.0004 33 1 4.1116 2.1485 -0.0009 34 1 5.3676 0.0378 -0.0105 35 1 2.7336 -2.1183 1.8819 36 1 2.2815 -3.8393 1.9276 37 1 3.6080 -3.2400 2.9522 38 1 3.0983 -6.1534 3.2106 39 1 0.8273 -2.5779 0.6726 40 1 -0.3433 -4.0520 0.6306 41 1 -1.6771 -6.1123 0.4339 42 1 0.6279 -7.4497 -2.7454 43 1 2.0372 -5.4322 -2.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725712984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:21 Heat of formation + Delta-G solvation = 11.104346 kcal Electronic energy + Delta-G solvation = -30782.890767 eV Core-core repulsion = 26793.771422 eV Total energy + Delta-G solvation = -3989.119345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36000 -41.03625 -39.63418 -39.24515 -36.86762 -35.93179 -33.88857 -33.79585 -33.15928 -32.26116 -30.83920 -28.33761 -27.81718 -26.72900 -25.94434 -24.54141 -24.12881 -22.72930 -21.79348 -20.57456 -19.69181 -18.98861 -18.52037 -18.05092 -17.22164 -17.03671 -16.73810 -16.66440 -16.47841 -16.01978 -15.59414 -15.46638 -15.28703 -14.99543 -14.70816 -14.64288 -14.44213 -14.41017 -14.21860 -13.77733 -13.66605 -13.16486 -12.93267 -12.87822 -12.71612 -12.64909 -12.54807 -12.32947 -12.22716 -12.14784 -11.47286 -11.14622 -10.96432 -10.91461 -10.59776 -10.41921 -10.19132 -9.87442 -9.61566 -9.25932 -8.26390 -5.88631 -0.37753 0.10029 0.14200 0.32358 1.30987 1.31806 1.41102 1.78337 1.96631 2.12773 2.20982 2.74652 2.86713 3.07815 3.13622 3.44309 3.49836 3.77761 3.90049 3.93552 3.94795 4.04796 4.13822 4.37627 4.41703 4.45463 4.51060 4.57665 4.75778 4.77089 4.79609 4.88211 4.94696 5.04425 5.11643 5.29495 5.32131 5.38198 5.39151 5.44633 5.52928 5.56106 5.60275 6.00084 6.05888 6.27735 6.49830 6.86842 7.07197 7.17682 7.46207 8.06484 8.63130 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009558 B = 0.006352 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.889960 B = 4407.094247 C = 6219.195550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.092 4.092 4 C -0.112 4.112 5 C -0.106 4.106 6 C -0.120 4.120 7 C 0.488 3.512 8 O -0.638 6.638 9 N -0.450 5.450 10 C 0.131 3.869 11 C -0.331 4.331 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.883 5.883 15 Si 0.977 3.023 16 H -0.277 1.277 17 H -0.260 1.260 18 H -0.280 1.280 19 C 0.143 3.857 20 N -0.654 5.654 21 C 0.556 3.444 22 O -0.540 6.540 23 C -0.091 4.091 24 C -0.128 4.128 25 C 0.100 3.900 26 N -0.484 5.484 27 C 0.096 3.904 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.272 0.728 39 H 0.421 0.579 40 H 0.167 0.833 41 H 0.201 0.799 42 H 0.185 0.815 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.744 9.031 0.992 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.130 4.130 5 C -0.125 4.125 6 C -0.125 4.125 7 C 0.279 3.721 8 O -0.527 6.527 9 N -0.168 5.168 10 C -0.012 4.012 11 C -0.459 4.459 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.523 5.523 15 Si 0.801 3.199 16 H -0.203 1.203 17 H -0.184 1.184 18 H -0.206 1.206 19 C 0.049 3.951 20 N -0.304 5.304 21 C 0.345 3.655 22 O -0.415 6.415 23 C -0.102 4.102 24 C -0.148 4.148 25 C -0.057 4.057 26 N -0.194 5.194 27 C -0.060 4.060 28 C -0.155 4.155 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.192 0.808 33 H 0.179 0.821 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.263 0.737 40 H 0.185 0.815 41 H 0.218 0.782 42 H 0.202 0.798 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.319 8.106 0.188 17.332 hybrid contribution 1.862 -0.569 0.159 1.953 sum -13.457 7.537 0.347 15.428 Atomic orbital electron populations 1.20800 0.87598 1.04385 1.03481 1.20224 0.98258 0.90426 1.00843 1.21449 0.93584 0.98122 0.97900 1.21397 0.95025 0.97316 0.99280 1.21179 0.99902 0.91640 0.99817 1.20177 0.93869 0.94121 1.04329 1.18252 0.85685 0.85147 0.83027 1.90520 1.37388 1.81768 1.42988 1.43586 1.38213 1.10617 1.24397 1.21816 0.93270 0.97696 0.88424 1.19443 1.21040 0.89125 1.16253 0.92290 1.25764 0.97175 1.01460 0.95052 1.70115 1.26844 1.34658 1.20664 0.85253 0.78539 0.77973 0.78140 1.20269 1.18380 1.20592 1.17529 0.88778 0.86292 1.02541 1.42947 1.40903 1.14605 1.31960 1.18627 0.83107 0.83318 0.80420 1.90901 1.29621 1.77637 1.43353 1.20272 0.96854 0.94705 0.98380 1.22585 0.93832 1.00521 0.97829 1.23348 0.98929 0.88325 0.95112 1.67620 1.16775 1.30814 1.04146 1.23021 0.90217 0.95598 0.97187 1.22318 1.00036 0.94644 0.98538 0.90507 0.91228 0.88013 0.80810 0.82060 0.87218 0.93264 0.90024 0.94941 0.91742 0.73726 0.81532 0.78227 0.79829 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.82 71.24 0.70 -0.92 16 2 C -0.10 -2.35 5.89 -19.76 -0.12 -2.47 16 3 C -0.09 -1.93 9.70 22.30 0.22 -1.71 16 4 C -0.11 -2.85 10.02 22.24 0.22 -2.62 16 5 C -0.11 -3.96 9.74 22.53 0.22 -3.74 16 6 C -0.12 -5.31 4.34 -19.99 -0.09 -5.39 16 7 C 0.49 27.58 4.13 86.66 0.36 27.94 16 8 O -0.64 -42.47 16.24 11.22 0.18 -42.28 16 9 N -0.45 -24.92 2.25 -662.65 -1.49 -26.41 16 10 C 0.13 6.02 6.81 127.77 0.87 6.89 16 11 C -0.33 -20.00 9.57 84.10 0.80 -19.20 16 12 H 0.06 3.98 7.17 -2.91 -0.02 3.96 16 13 C 0.01 0.38 5.44 84.95 0.46 0.84 16 14 N -0.88 -44.76 9.49 21.68 0.21 -44.56 16 15 Si 0.98 44.41 29.56 68.60 2.03 46.44 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 C 0.14 5.01 4.32 38.63 0.17 5.17 16 20 N -0.65 -22.00 2.18 -305.29 -0.67 -22.66 16 21 C 0.56 23.17 6.25 86.86 0.54 23.72 16 22 O -0.54 -28.72 13.26 11.57 0.15 -28.57 16 23 C -0.09 -3.24 5.91 -19.88 -0.12 -3.36 16 24 C -0.13 -3.34 9.61 22.64 0.22 -3.12 16 25 C 0.10 2.38 11.17 84.67 0.95 3.32 16 26 N -0.48 -13.66 10.33 -196.02 -2.03 -15.68 16 27 C 0.10 2.82 11.17 84.67 0.95 3.76 16 28 C -0.13 -4.81 9.68 22.63 0.22 -4.59 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 0.96 6.74 -2.38 -0.02 0.95 16 31 H 0.10 0.95 8.11 -2.39 -0.02 0.93 16 32 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.05 1.97 4.73 -2.39 -0.01 1.96 16 36 H 0.08 3.69 6.23 -2.39 -0.01 3.67 16 37 H 0.03 1.59 7.46 -2.39 -0.02 1.57 16 38 H 0.27 12.94 8.31 -92.70 -0.77 12.17 16 39 H 0.42 10.83 5.74 -92.71 -0.53 10.29 16 40 H 0.17 3.09 6.55 -2.91 -0.02 3.07 16 41 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.18 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.12 4.85 7.74 -2.91 -0.02 4.83 16 Total: -1.00 -88.30 355.42 5.50 -82.80 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.54 Total: 26.40 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 6.57 Total: 24.53 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -3.98 Total: -109.32 kcal Atomic # 8 Polarization: -71.19 SS G_CDS: 0.34 Total: -70.85 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -88.30 5.50 -82.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725712984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.906 kcal (2) G-P(sol) polarization free energy of solvation -88.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds