Wall clock time and date at job start Tue Mar 31 2020 22:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47202 * 240.00379 * 3 2 1 5 5 H 1.48500 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47001 * 120.00169 * 3 2 1 7 7 C 1.38815 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00414 * 163.08095 * 7 2 1 9 9 N 1.36935 * 119.99987 * 343.07380 * 7 2 1 10 10 C 1.46935 * 120.62941 * 331.84897 * 9 7 2 11 11 C 1.53192 * 108.77383 * 233.58326 * 10 9 7 12 12 C 1.53036 * 109.31119 * 305.36566 * 11 10 9 13 13 N 1.46509 * 109.45830 * 181.38796 * 12 11 10 14 14 C 1.34769 * 120.00052 * 154.97327 * 13 12 11 15 15 O 1.21589 * 120.00309 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00792 * 180.02562 * 16 14 13 18 18 C 1.52993 * 109.47523 * 179.97438 * 17 16 14 19 19 H 1.08995 * 109.47380 * 304.99840 * 18 17 16 20 20 O 1.42903 * 109.47125 * 65.00284 * 18 17 16 21 21 C 1.50703 * 109.47193 * 184.99606 * 18 17 16 22 22 C 1.38430 * 122.53538 * 100.00259 * 21 18 17 23 23 C 1.33387 * 114.91718 * 179.97438 * 22 21 18 24 24 S 1.75878 * 109.59608 * 359.97438 * 23 22 21 25 25 C 1.33390 * 122.54360 * 279.71196 * 21 18 17 26 26 C 1.53041 * 109.53124 * 61.37432 * 12 11 10 27 27 C 1.46926 * 120.63176 * 151.82395 * 9 7 2 28 28 H 0.97004 * 120.00184 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58399 * 113.79893 * 10 9 7 30 30 H 1.08995 * 109.70404 * 353.44118 * 10 9 7 31 31 H 1.08995 * 109.49489 * 185.41701 * 11 10 9 32 32 H 1.08998 * 109.52338 * 65.33104 * 11 10 9 33 33 H 1.09006 * 109.46464 * 301.35695 * 12 11 10 34 34 H 0.97000 * 119.99448 * 334.96957 * 13 12 11 35 35 H 0.97007 * 119.99548 * 359.97438 * 16 14 13 36 36 H 1.09002 * 109.46944 * 59.99514 * 17 16 14 37 37 H 1.08998 * 109.47007 * 300.00370 * 17 16 14 38 38 H 0.96700 * 114.00276 * 59.99694 * 20 18 17 39 39 H 1.07997 * 122.53996 * 359.95909 * 22 21 18 40 40 H 1.08007 * 125.19876 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.20181 * 0.02709 * 25 21 18 42 42 H 1.09005 * 109.49601 * 58.57244 * 26 12 11 43 43 H 1.08992 * 109.50172 * 178.67147 * 26 12 11 44 44 H 1.09004 * 109.58542 * 246.20245 * 27 9 7 45 45 H 1.08994 * 109.58399 * 6.48710 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2727 9 7 1.3702 -2.3625 0.3442 10 6 0.2261 -2.3410 1.2659 11 6 0.4974 -3.3210 2.4116 12 6 0.8120 -4.7022 1.8323 13 7 1.0395 -5.6499 2.9262 14 6 0.8357 -6.9675 2.7296 15 8 0.4633 -7.3698 1.6442 16 7 1.0455 -7.8394 3.7356 17 6 0.8244 -9.2717 3.5218 18 6 1.1330 -10.0337 4.8121 19 1 2.1438 -9.7945 5.1424 20 8 0.1987 -9.6540 5.8246 21 6 1.0246 -11.5153 4.5588 22 6 2.1324 -12.3165 4.3416 23 6 1.8614 -13.6059 4.1339 24 16 0.1231 -13.8629 4.2095 25 6 -0.1456 -12.1550 4.5325 26 6 2.0676 -4.6178 0.9614 27 6 1.8140 -3.6527 -0.2009 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6412 0.7344 30 1 0.0967 -1.3360 1.6676 31 1 -0.3832 -3.3865 3.0505 32 1 1.3469 -2.9702 2.9976 33 1 -0.0281 -5.0419 1.2265 34 1 1.3370 -5.3290 3.7919 35 1 1.3436 -7.5186 4.6012 36 1 1.4795 -9.6256 2.7258 37 1 -0.2147 -9.4408 3.2393 38 1 -0.7232 -9.8381 5.5981 39 1 3.1397 -11.9270 4.3402 40 1 2.5969 -14.3746 3.9477 41 1 -1.1105 -11.6944 4.6847 42 1 2.9024 -4.2543 1.5608 43 1 2.3047 -5.6063 0.5682 44 1 1.0403 -4.0598 -0.8520 45 1 2.7333 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740049645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:55 Heat of formation + Delta-G solvation = -24.523698 kcal Electronic energy + Delta-G solvation = -26547.852204 eV Core-core repulsion = 22692.631862 eV Total energy + Delta-G solvation = -3855.220342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.18615 -39.36283 -37.48079 -36.61551 -34.48121 -34.21176 -32.08513 -30.66417 -30.05679 -29.43186 -28.39741 -25.33156 -24.50655 -22.53326 -22.20486 -21.84687 -20.64247 -19.55432 -19.25610 -18.53668 -18.18002 -17.19150 -16.73499 -16.20797 -15.67519 -15.25806 -14.84493 -14.80663 -14.38274 -14.23835 -13.82988 -13.62361 -13.51800 -13.39530 -13.32679 -13.01665 -12.84238 -12.71970 -12.35325 -12.29762 -11.89892 -11.42499 -11.26408 -11.08952 -10.82283 -10.69824 -10.68101 -10.46900 -10.24923 -10.02582 -9.99800 -9.72585 -9.51535 -9.29029 -9.18262 -8.87028 -8.56983 -8.40933 -6.65917 -5.77500 -3.19582 0.52394 1.18847 1.51351 2.13718 2.82138 3.39184 3.39646 3.45221 3.46404 3.93888 4.19402 4.37611 4.51247 4.52043 4.57600 4.70032 4.90252 5.09738 5.36219 5.37147 5.42185 5.49193 5.54416 5.59664 5.65294 5.85353 5.93597 5.95810 6.11966 6.32587 6.38705 6.40259 6.53529 6.61084 6.64884 6.83743 6.93594 7.02325 7.08207 7.14860 7.34833 7.64512 7.80942 8.17944 8.46822 8.78270 9.22901 9.86227 10.43590 11.31410 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037404 B = 0.001740 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.394447 B =16088.190965 C =16251.493128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.701 3.299 15 O -0.592 6.592 16 N -0.748 5.748 17 C 0.116 3.884 18 C 0.158 3.842 19 H 0.115 0.885 20 O -0.550 6.550 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.211 4.211 24 S 0.108 5.892 25 C -0.202 4.202 26 C -0.139 4.139 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.391 0.609 35 H 0.398 0.602 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.377 0.623 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -26.247 13.646 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.405 5.405 17 C -0.009 4.009 18 C 0.096 3.904 19 H 0.133 0.867 20 O -0.356 6.356 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.346 4.346 24 S 0.372 5.628 25 C -0.338 4.338 26 C -0.180 4.180 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.225 0.775 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.182 0.818 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.557 -27.564 12.728 30.366 hybrid contribution 1.157 2.039 0.642 2.431 sum 1.714 -25.525 13.370 28.866 Atomic orbital electron populations 1.70017 1.05235 1.25615 1.53930 1.25055 0.95296 0.98414 1.00939 0.86362 0.78891 0.83355 0.78107 1.20895 1.21658 1.21083 1.19148 0.92551 0.84777 1.41672 0.91716 1.44086 1.35810 1.01670 1.49968 1.20740 0.88917 0.97863 0.87684 1.22542 1.00491 0.94768 1.00815 1.20908 0.98308 0.87498 0.86772 1.45538 1.72628 1.04877 1.16118 1.16005 0.78567 0.81323 0.83976 1.90924 1.53630 1.78070 1.24415 1.44994 1.74839 1.06237 1.14476 1.21780 1.02319 0.79796 0.97048 1.20733 0.94766 0.87302 0.87585 0.86684 1.86628 1.19622 1.85740 1.43583 1.19416 0.92811 0.97465 1.04848 1.20040 0.99912 0.92685 1.02939 1.25651 0.98644 1.00553 1.09768 1.84370 1.02020 1.06910 1.69492 1.25395 1.01938 0.97285 1.09202 1.22389 0.97276 0.99455 0.98838 1.20878 0.97865 0.86515 0.92690 0.93564 0.96100 0.89052 0.92778 0.92233 0.90126 0.77579 0.76828 0.90601 0.91329 0.77536 0.83861 0.81611 0.81773 0.92470 0.92747 0.96186 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.19 55.49 0.62 -25.54 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.93 2.99 -172.32 -0.52 -15.45 16 10 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 11 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 12 C 0.17 3.01 2.42 -67.89 -0.16 2.85 16 13 N -0.74 -10.60 5.08 -58.63 -0.30 -10.90 16 14 C 0.70 10.57 8.53 -86.93 -0.74 9.83 16 15 O -0.59 -11.53 16.01 5.29 0.08 -11.45 16 16 N -0.75 -7.91 5.51 -65.23 -0.36 -8.27 16 17 C 0.12 1.07 5.29 -4.05 -0.02 1.05 16 18 C 0.16 1.09 3.33 -27.89 -0.09 1.00 16 19 H 0.12 0.73 8.08 -51.93 -0.42 0.31 16 20 O -0.55 -3.98 13.15 -35.23 -0.46 -4.44 16 21 C -0.13 -0.93 4.88 -106.24 -0.52 -1.44 16 22 C -0.13 -0.84 9.95 -41.21 -0.41 -1.25 16 23 C -0.21 -1.30 11.23 29.04 0.33 -0.98 16 24 S 0.11 0.68 23.34 -107.50 -2.51 -1.83 16 25 C -0.20 -1.32 10.45 29.04 0.30 -1.01 16 26 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 27 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 34 H 0.39 4.50 8.62 -40.82 -0.35 4.15 16 35 H 0.40 3.29 8.49 -40.82 -0.35 2.95 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.38 1.75 7.88 45.56 0.36 2.11 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 41 H 0.16 0.74 7.28 -52.49 -0.38 0.36 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -33.67 381.14 -10.65 -44.32 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.04 Total: 6.57 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.89 Total: 4.65 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.55 Total: -60.16 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.38 Total: -15.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.67 -10.65 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740049645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.801 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds