Wall clock time and date at job start Tue Mar 31 2020 22:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00093 * 2 1 4 4 H 1.48503 * 109.47122 * 270.00259 * 3 2 1 5 5 H 1.48506 * 109.47265 * 30.00349 * 3 2 1 6 6 H 1.48503 * 109.47143 * 150.00149 * 3 2 1 7 7 C 1.38813 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99967 * 163.07252 * 7 2 1 9 9 N 1.36937 * 120.00028 * 343.07388 * 7 2 1 10 10 C 1.46923 * 120.63080 * 331.84856 * 9 7 2 11 11 C 1.53197 * 108.77179 * 233.58582 * 10 9 7 12 12 C 1.53038 * 109.31602 * 305.36586 * 11 10 9 13 13 N 1.46493 * 109.46064 * 181.38794 * 12 11 10 14 14 C 1.34782 * 119.99765 * 154.97139 * 13 12 11 15 15 O 1.21587 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99678 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99843 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47090 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.46732 * 60.00110 * 18 17 16 20 20 O 1.42902 * 109.47023 * 300.00175 * 18 17 16 21 21 C 1.50693 * 109.46890 * 180.02562 * 18 17 16 22 22 C 1.38428 * 122.53916 * 265.00221 * 21 18 17 23 23 C 1.33392 * 114.92065 * 180.02562 * 22 21 18 24 24 S 1.75881 * 109.59483 * 0.02562 * 23 22 21 25 25 C 1.33388 * 122.54189 * 85.02842 * 21 18 17 26 26 C 1.53036 * 109.52695 * 61.36987 * 12 11 10 27 27 C 1.46926 * 120.62881 * 151.82652 * 9 7 2 28 28 H 0.97003 * 119.99796 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.59069 * 113.80139 * 10 9 7 30 30 H 1.09000 * 109.70154 * 353.44007 * 10 9 7 31 31 H 1.09003 * 109.49507 * 185.40943 * 11 10 9 32 32 H 1.09001 * 109.52342 * 65.33425 * 11 10 9 33 33 H 1.09006 * 109.45522 * 301.35928 * 12 11 10 34 34 H 0.96994 * 120.00188 * 334.97287 * 13 12 11 35 35 H 0.97001 * 119.99949 * 359.97438 * 16 14 13 36 36 H 1.09003 * 109.47015 * 59.99637 * 17 16 14 37 37 H 1.08997 * 109.47253 * 300.00137 * 17 16 14 38 38 H 0.96698 * 113.99730 * 299.99395 * 20 18 17 39 39 H 1.07997 * 122.53906 * 0.04037 * 22 21 18 40 40 H 1.08002 * 125.20212 * 180.02562 * 23 22 21 41 41 H 1.08000 * 125.20034 * 359.94054 * 25 21 18 42 42 H 1.08993 * 109.49873 * 58.58363 * 26 12 11 43 43 H 1.09000 * 109.50144 * 178.68018 * 26 12 11 44 44 H 1.09007 * 109.58780 * 246.19834 * 27 9 7 45 45 H 1.08998 * 109.59020 * 6.48010 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3700 -2.3625 0.3442 10 6 0.2260 -2.3409 1.2658 11 6 0.4974 -3.3210 2.4116 12 6 0.8119 -4.7022 1.8324 13 7 1.0395 -5.6498 2.9262 14 6 0.8355 -6.9675 2.7295 15 8 0.4622 -7.3697 1.6445 16 7 1.0443 -7.8393 3.7360 17 6 0.8221 -9.2715 3.5225 18 6 1.1298 -10.0334 4.8131 19 1 0.4750 -9.6788 5.6091 20 8 2.4923 -9.8127 5.1833 21 6 0.9018 -11.5067 4.5933 22 6 -0.2903 -12.1319 4.9161 23 6 -0.3266 -13.4402 4.6583 24 16 1.2101 -13.9486 3.9700 25 6 1.8334 -12.3071 4.0732 26 6 2.0674 -4.6178 0.9614 27 6 1.8138 -3.6527 -0.2009 28 1 -0.4850 0.8401 0.0004 29 1 -0.6771 -2.6411 0.7345 30 1 0.0967 -1.3359 1.6676 31 1 -0.3832 -3.3864 3.0507 32 1 1.3469 -2.9702 2.9976 33 1 -0.0282 -5.0418 1.2266 34 1 1.3368 -5.3290 3.7918 35 1 1.3418 -7.5184 4.6017 36 1 1.4771 -9.6262 2.7267 37 1 -0.2170 -9.4398 3.2397 38 1 3.1323 -10.1050 4.5200 39 1 -1.1276 -11.6008 5.3441 40 1 -1.1705 -14.0882 4.8438 41 1 2.8197 -11.9950 3.7629 42 1 2.9022 -4.2545 1.5606 43 1 2.3045 -5.6064 0.5680 44 1 1.0401 -4.0599 -0.8520 45 1 2.7331 -3.5125 -0.7694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740049646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:58 Heat of formation + Delta-G solvation = -49.450762 kcal Electronic energy + Delta-G solvation = -26564.959796 eV Core-core repulsion = 22708.658535 eV Total energy + Delta-G solvation = -3856.301261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26245 -40.10636 -39.03069 -37.23234 -35.98882 -35.28535 -33.85138 -31.86513 -31.39603 -30.79630 -29.24242 -26.91017 -25.46566 -23.95178 -23.62056 -22.92207 -21.84597 -21.04933 -19.97981 -19.35381 -19.03468 -18.64750 -17.80584 -17.24884 -16.77082 -16.69573 -15.99505 -15.86163 -15.56494 -15.38550 -15.29377 -15.03609 -14.76127 -14.44924 -14.36745 -14.04659 -13.85718 -13.78775 -13.45033 -13.19042 -13.11898 -12.99659 -12.60013 -12.50209 -12.41587 -12.22130 -12.00908 -11.85862 -11.77272 -11.55030 -11.41995 -11.30487 -11.11909 -10.54853 -10.31620 -9.76417 -9.71756 -9.35717 -8.69591 -7.86833 -5.32373 0.05352 0.72781 1.04772 1.48987 1.50205 1.56147 1.60419 1.84075 2.19324 2.53014 3.24558 3.32239 3.43928 3.67816 3.74998 3.91128 3.95194 4.06327 4.08739 4.16196 4.36385 4.45507 4.47954 4.61997 4.66632 4.68673 4.81656 4.83582 4.88064 5.04045 5.08146 5.10654 5.17724 5.31140 5.39172 5.46020 5.47639 5.49614 5.62544 5.65823 5.71662 6.06100 6.40117 6.65316 7.15461 7.15755 7.63496 7.85010 8.38223 9.20368 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.001736 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.472327 B =16124.981983 C =16144.596798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.726 5.726 14 C 0.699 3.301 15 O -0.638 6.638 16 N -0.727 5.727 17 C 0.118 3.882 18 C 0.175 3.825 19 H 0.126 0.874 20 O -0.558 6.558 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.216 4.216 24 S 0.101 5.899 25 C -0.210 4.210 26 C -0.123 4.123 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.006 1.006 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.413 0.587 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.387 0.613 39 H 0.157 0.843 40 H 0.184 0.816 41 H 0.180 0.820 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 -27.072 15.617 31.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.076 3.924 13 N -0.380 5.380 14 C 0.399 3.601 15 O -0.520 6.520 16 N -0.384 5.384 17 C -0.008 4.008 18 C 0.112 3.888 19 H 0.143 0.857 20 O -0.365 6.365 21 C -0.156 4.156 22 C -0.169 4.169 23 C -0.351 4.351 24 S 0.366 5.634 25 C -0.345 4.345 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.237 0.763 39 H 0.174 0.826 40 H 0.201 0.799 41 H 0.197 0.803 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.503 -28.495 14.657 32.141 hybrid contribution -0.082 2.269 0.137 2.275 sum 2.421 -26.226 14.793 30.208 Atomic orbital electron populations 1.70188 1.06691 1.25943 1.55338 1.25830 0.96064 1.01560 1.01159 0.85255 0.78123 0.79415 0.77486 1.21389 1.21760 1.19360 1.19510 0.92870 0.85821 1.41107 0.91498 1.44346 1.35950 1.02180 1.50741 1.20570 0.87704 0.97764 0.88773 1.22257 1.01971 0.93589 0.98895 1.20475 0.96878 0.87722 0.87325 1.45117 1.72590 1.04322 1.16018 1.16151 0.78240 0.81625 0.84084 1.90903 1.55639 1.78820 1.26631 1.44792 1.73262 1.06214 1.14142 1.21846 1.01924 0.78970 0.98031 1.20559 0.84614 0.88008 0.95572 0.85656 1.86604 1.15241 1.85844 1.48805 1.19507 0.95007 0.97421 1.03709 1.20273 0.98835 0.94394 1.03421 1.25939 1.02081 0.99643 1.07428 1.84395 1.08098 1.09235 1.61715 1.25667 1.04833 0.96556 1.07489 1.22174 0.97947 0.98443 0.97756 1.20968 0.97317 0.85994 0.93903 0.94021 0.98792 0.91778 0.90503 0.91067 0.92735 0.75407 0.75000 0.92164 0.91588 0.76304 0.82580 0.79911 0.80256 0.91547 0.92449 0.97605 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 11.19 21.65 0.24 -55.10 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 3 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 9 N -0.61 -30.99 2.99 -699.09 -2.09 -33.09 16 10 C 0.18 8.57 5.30 86.36 0.46 9.02 16 11 C -0.13 -4.54 5.55 30.67 0.17 -4.37 16 12 C 0.18 6.27 2.42 45.02 0.11 6.38 16 13 N -0.73 -19.21 5.08 -457.69 -2.33 -21.54 16 14 C 0.70 19.91 8.53 179.05 1.53 21.44 16 15 O -0.64 -24.54 16.01 -3.99 -0.06 -24.60 16 16 N -0.73 -13.72 5.45 -478.52 -2.61 -16.33 16 17 C 0.12 1.98 5.32 86.38 0.46 2.44 16 18 C 0.17 2.03 3.39 29.85 0.10 2.13 16 19 H 0.13 1.23 8.11 -2.39 -0.02 1.21 16 20 O -0.56 -6.60 12.91 -148.98 -1.92 -8.53 16 21 C -0.14 -1.77 4.91 -20.92 -0.10 -1.87 16 22 C -0.14 -1.64 9.96 21.22 0.21 -1.42 16 23 C -0.22 -2.36 11.23 66.72 0.75 -1.61 16 24 S 0.10 1.17 23.34 -56.49 -1.32 -0.15 16 25 C -0.21 -2.43 10.43 66.72 0.70 -1.74 16 26 C -0.12 -4.48 5.65 30.67 0.17 -4.30 16 27 C 0.14 6.36 6.52 86.36 0.56 6.93 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 30 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.05 2.21 7.58 -2.38 -0.02 2.20 16 34 H 0.41 8.03 8.62 -92.71 -0.80 7.24 16 35 H 0.41 5.57 8.36 -92.71 -0.78 4.80 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.39 2.74 7.78 -74.06 -0.58 2.17 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.18 1.34 7.14 -2.91 -0.02 1.32 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -73.28 380.61 -2.84 -76.12 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -1.12 Total: 19.70 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.34 Total: 16.90 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -6.78 Total: -126.05 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.99 Total: -33.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.32 Total: -0.15 kcal Total: -73.28 -2.84 -76.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740049646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.672 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds