Wall clock time and date at job start Tue Mar 31 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38840 * 125.85854 * 2 1 4 4 C 1.46211 * 126.54673 * 0.02562 * 3 2 1 5 5 C 1.38077 * 119.99954 * 164.13221 * 4 3 2 6 6 C 1.43203 * 120.00361 * 174.28228 * 5 4 3 7 7 N 6.00958 * 95.23778 * 1.11618 * 2 1 3 8 8 C 1.46827 * 120.00078 * 354.28187 * 5 4 3 9 9 O 1.21582 * 120.00307 * 98.93324 * 8 5 4 10 10 O 1.34850 * 119.99583 * 278.93515 * 8 5 4 11 11 C 1.45199 * 117.00057 * 176.38199 * 10 8 5 12 12 C 1.53000 * 109.47470 * 183.34843 * 11 10 8 13 13 C 1.50702 * 115.54827 * 304.78088 * 12 11 10 14 14 H 1.07998 * 119.99768 * 144.33020 * 13 12 11 15 15 C 1.37880 * 119.99960 * 324.33633 * 13 12 11 16 16 N 1.31510 * 119.99758 * 0.47613 * 15 13 12 17 17 Si 1.86799 * 119.99859 * 180.48019 * 15 13 12 18 18 H 1.48503 * 109.47313 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47105 * 119.99671 * 17 15 13 20 20 H 1.48491 * 109.46952 * 239.99816 * 17 15 13 21 21 C 1.52992 * 117.49987 * 159.10819 * 12 11 10 22 22 C 1.53002 * 117.49550 * 90.44749 * 12 11 10 23 23 C 1.41815 * 106.90384 * 180.02562 * 3 2 1 24 24 C 1.36213 * 106.99575 * 0.02562 * 23 3 2 25 25 C 1.43199 * 125.76111 * 179.97438 * 24 23 3 26 26 N 4.71981 * 151.28199 * 180.02562 * 2 1 3 27 27 N 1.34314 * 125.85789 * 180.29883 * 2 1 3 28 28 C 1.46495 * 125.33161 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47076 * 89.97819 * 1 2 3 30 30 H 1.09002 * 109.46976 * 209.97470 * 1 2 3 31 31 H 1.09002 * 109.47358 * 329.97435 * 1 2 3 32 32 H 1.07996 * 120.00258 * 344.12677 * 4 3 2 33 33 H 1.09003 * 109.46594 * 303.35048 * 11 10 8 34 34 H 1.09000 * 109.47451 * 63.34379 * 11 10 8 35 35 H 0.97009 * 119.99839 * 185.01272 * 16 15 13 36 36 H 1.09001 * 117.49915 * 0.02562 * 21 12 11 37 37 H 1.09000 * 117.49945 * 145.02013 * 21 12 11 38 38 H 1.09004 * 117.49339 * 214.97725 * 22 12 11 39 39 H 1.08991 * 117.50151 * 359.97438 * 22 12 11 40 40 H 1.07998 * 126.49946 * 180.02562 * 23 3 2 41 41 H 1.08997 * 109.47450 * 270.16807 * 28 27 2 42 42 H 1.09003 * 109.46759 * 30.16925 * 28 27 2 43 43 H 1.09000 * 109.47013 * 150.16590 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3203 1.1252 0.0000 4 6 1.8783 2.5190 0.0005 5 6 2.7661 3.5246 0.3274 6 6 2.3700 4.8958 0.2099 7 7 2.0556 5.9834 0.1166 8 6 4.1165 3.1883 0.7955 9 8 5.0543 3.2235 0.0225 10 8 4.3166 2.8403 2.0829 11 6 5.6621 2.4427 2.4568 12 6 5.6763 2.0069 3.9233 13 6 5.1465 3.0182 4.9070 14 1 4.5909 2.6896 5.7729 15 6 5.3710 4.3630 4.7015 16 7 6.0394 4.7637 3.6422 17 14 4.7259 5.6157 5.9279 18 1 4.0120 4.9129 7.0242 19 1 5.8625 6.3873 6.4916 20 1 3.7898 6.5425 5.2426 21 6 6.8277 1.1104 4.3828 22 6 5.4209 0.5285 4.2234 23 6 3.6615 0.6646 -0.0006 24 6 3.6150 -0.6967 -0.0015 25 6 4.7477 -1.5728 -0.0029 26 7 5.6462 -2.2679 -0.0010 27 7 2.2938 -1.0886 -0.0057 28 6 1.8214 -2.4753 -0.0134 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 0.8575 2.7619 -0.2548 33 1 5.9836 1.6125 1.8278 34 1 6.3408 3.2849 2.3215 35 1 6.2604 5.7021 3.5345 36 1 7.5755 0.8314 3.6404 37 1 7.2019 1.2518 5.3968 38 1 4.8702 0.2873 5.1326 39 1 5.2425 -0.1335 3.3761 40 1 4.5511 1.2770 -0.0004 41 1 1.7010 -2.8239 1.0122 42 1 0.8634 -2.5298 -0.5306 43 1 2.5483 -3.1038 -0.5279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:12 Heat of formation + Delta-G solvation = 78.722413 kcal Electronic energy + Delta-G solvation = -29306.122615 eV Core-core repulsion = 25319.935409 eV Total energy + Delta-G solvation = -3986.187206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86641 -39.63732 -36.99458 -36.56754 -36.36207 -34.96997 -34.59017 -32.58365 -32.15269 -31.73581 -27.49653 -27.15914 -26.50488 -25.39238 -24.33717 -21.64297 -21.42766 -21.18337 -19.92431 -19.16376 -18.18187 -17.72891 -16.72283 -16.19363 -16.06692 -15.70872 -15.61731 -14.82851 -14.55334 -14.12324 -13.95376 -13.78516 -13.67374 -13.63289 -13.36393 -13.25538 -13.18552 -12.96369 -12.81693 -12.78187 -12.59693 -12.26350 -12.20967 -12.07978 -11.78565 -11.71979 -11.38151 -11.01609 -10.78293 -10.49844 -10.32987 -10.32173 -9.99031 -9.53944 -9.39412 -8.96389 -8.78890 -8.73568 -8.20280 -7.93216 -5.98339 -4.09811 0.59226 1.24474 1.96709 2.49198 2.61937 2.81897 2.95768 3.29414 3.35594 3.38991 3.40991 3.45006 3.69090 3.78784 4.14579 4.31362 4.36377 4.38784 4.66242 4.69022 4.87015 4.96290 4.98319 5.11028 5.17484 5.27554 5.46372 5.48972 5.58004 5.76378 5.93952 6.04288 6.08219 6.21107 6.42521 6.46633 6.58774 6.62234 6.63862 6.71655 6.80142 6.96405 7.24129 7.35572 7.44166 7.49824 7.68757 7.93735 8.33172 8.55212 8.88055 9.53031 10.98533 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.004740 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.438960 B = 5905.831420 C = 7404.140637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.112 3.888 3 C -0.181 4.181 4 C 0.069 3.931 5 C -0.094 4.094 6 C 0.271 3.729 7 N -0.414 5.414 8 C 0.519 3.481 9 O -0.513 6.513 10 O -0.302 6.302 11 C 0.115 3.885 12 C 0.049 3.951 13 C -0.477 4.477 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.884 5.884 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.195 4.195 22 C -0.206 4.206 23 C -0.079 4.079 24 C 0.048 3.952 25 C 0.281 3.719 26 N -0.404 5.404 27 N -0.411 5.411 28 C 0.061 3.939 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.022 0.978 34 H 0.122 0.878 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.168 0.832 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 -13.191 -9.398 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.010 4.010 3 C -0.188 4.188 4 C 0.046 3.954 5 C -0.099 4.099 6 C -0.043 4.043 7 N -0.091 5.091 8 C 0.362 3.638 9 O -0.405 6.405 10 O -0.215 6.215 11 C 0.042 3.958 12 C 0.048 3.952 13 C -0.515 4.515 14 H 0.081 0.919 15 C -0.129 4.129 16 N -0.522 5.522 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.233 4.233 22 C -0.243 4.243 23 C -0.106 4.106 24 C -0.062 4.062 25 C -0.035 4.035 26 N -0.081 5.081 27 N -0.085 5.085 28 C -0.080 4.080 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.167 0.833 33 H 0.040 0.960 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.185 0.815 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.833 -12.808 -9.807 20.614 hybrid contribution -0.145 0.415 0.762 0.880 sum -12.978 -12.393 -9.045 20.095 Atomic orbital electron populations 1.20575 0.86313 1.04765 1.03735 1.20962 0.93613 0.84764 1.01706 1.18181 0.92168 0.91335 1.17091 1.21910 0.96862 0.88391 0.88237 1.17072 0.94892 0.86336 1.11596 1.24896 0.93911 0.91983 0.93528 1.81199 1.07964 1.10410 1.09497 1.20311 0.87521 0.73696 0.82269 1.90841 1.42986 1.50109 1.56576 1.86690 1.36348 1.74325 1.24150 1.23033 0.80037 0.99316 0.93387 1.18896 0.96765 0.87724 0.91794 1.20482 1.34299 0.89669 1.07004 0.91946 1.24930 0.94608 0.98311 0.95011 1.69722 1.39672 1.16237 1.26592 0.86477 0.78811 0.81331 0.81102 1.19652 1.20946 1.20821 1.22988 0.90929 1.08099 1.01273 1.22909 0.99947 1.00070 1.01415 1.22016 0.98473 0.91780 0.98302 1.15075 0.79626 0.90429 1.21022 1.24244 0.92861 0.92953 0.93428 1.81294 1.08895 1.07582 1.10316 1.43484 1.04313 1.06844 1.53841 1.22268 1.02105 0.79088 1.04519 0.89599 0.90654 0.88692 0.83287 0.95953 0.86047 0.92720 0.91493 0.89781 0.90411 0.91547 0.81477 0.89603 0.88611 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.37 9.64 36.00 0.35 -0.02 16 2 C 0.11 0.93 6.95 -81.28 -0.57 0.36 16 3 C -0.18 -2.10 5.94 -105.11 -0.62 -2.73 16 4 C 0.07 0.78 9.53 -36.44 -0.35 0.44 16 5 C -0.09 -1.51 5.77 -104.56 -0.60 -2.11 16 6 C 0.27 4.69 15.36 -22.47 -0.35 4.35 16 7 N -0.41 -7.76 18.54 41.84 0.78 -6.98 16 8 C 0.52 10.56 4.26 34.20 0.15 10.70 16 9 O -0.51 -11.31 15.34 -19.33 -0.30 -11.61 16 10 O -0.30 -6.91 9.88 -40.90 -0.40 -7.32 16 11 C 0.12 2.76 4.41 37.16 0.16 2.92 16 12 C 0.05 1.19 2.17 -155.66 -0.34 0.85 16 13 C -0.48 -12.72 8.81 -34.44 -0.30 -13.02 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.99 5.36 -17.82 -0.10 1.89 16 16 N -0.88 -24.53 10.36 55.43 0.57 -23.95 16 17 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.19 -4.31 9.96 -26.70 -0.27 -4.57 16 22 C -0.21 -4.39 9.93 -26.69 -0.27 -4.65 16 23 C -0.08 -1.13 9.25 -38.94 -0.36 -1.49 16 24 C 0.05 0.59 6.68 -83.98 -0.56 0.03 16 25 C 0.28 3.89 15.10 -22.47 -0.34 3.55 16 26 N -0.40 -6.26 18.54 41.84 0.78 -5.48 16 27 N -0.41 -3.62 3.12 -116.58 -0.36 -3.99 16 28 C 0.06 0.29 10.45 59.84 0.63 0.92 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.19 7.63 -51.93 -0.40 -0.21 16 31 H 0.09 0.32 7.83 -51.93 -0.41 -0.09 16 32 H 0.15 1.00 7.93 -52.49 -0.42 0.58 16 33 H 0.02 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.12 3.27 5.85 -51.93 -0.30 2.97 16 35 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.17 2.88 4.46 -52.49 -0.23 2.65 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.17 7.55 -51.93 -0.39 -0.22 16 43 H 0.09 0.42 7.74 -51.93 -0.40 0.02 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -33.61 388.05 -6.89 -40.50 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.04 Total: -0.60 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.73 Total: -2.60 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 1.76 Total: -40.41 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.70 Total: -18.92 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.61 -6.89 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.221 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds