Wall clock time and date at job start Tue Mar 31 2020 23:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38840 * 125.85854 * 2 1 4 4 C 1.46211 * 126.54673 * 0.02562 * 3 2 1 5 5 C 1.38077 * 119.99954 * 164.13221 * 4 3 2 6 6 C 1.43203 * 120.00361 * 174.28228 * 5 4 3 7 7 N 6.00958 * 95.23778 * 1.11618 * 2 1 3 8 8 C 1.46827 * 120.00078 * 354.28187 * 5 4 3 9 9 O 1.21582 * 120.00307 * 98.93324 * 8 5 4 10 10 O 1.34850 * 119.99583 * 278.93515 * 8 5 4 11 11 C 1.45199 * 117.00057 * 176.38199 * 10 8 5 12 12 C 1.53000 * 109.47470 * 183.34843 * 11 10 8 13 13 C 1.50702 * 115.54827 * 304.78088 * 12 11 10 14 14 H 1.07998 * 119.99768 * 144.33020 * 13 12 11 15 15 C 1.37880 * 119.99960 * 324.33633 * 13 12 11 16 16 N 1.31510 * 119.99758 * 0.47613 * 15 13 12 17 17 Si 1.86799 * 119.99859 * 180.48019 * 15 13 12 18 18 H 1.48503 * 109.47313 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47105 * 119.99671 * 17 15 13 20 20 H 1.48491 * 109.46952 * 239.99816 * 17 15 13 21 21 C 1.52992 * 117.49987 * 159.10819 * 12 11 10 22 22 C 1.53002 * 117.49550 * 90.44749 * 12 11 10 23 23 C 1.41815 * 106.90384 * 180.02562 * 3 2 1 24 24 C 1.36213 * 106.99575 * 0.02562 * 23 3 2 25 25 C 1.43199 * 125.76111 * 179.97438 * 24 23 3 26 26 N 4.71981 * 151.28199 * 180.02562 * 2 1 3 27 27 N 1.34314 * 125.85789 * 180.29883 * 2 1 3 28 28 C 1.46495 * 125.33161 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47076 * 89.97819 * 1 2 3 30 30 H 1.09002 * 109.46976 * 209.97470 * 1 2 3 31 31 H 1.09002 * 109.47358 * 329.97435 * 1 2 3 32 32 H 1.07996 * 120.00258 * 344.12677 * 4 3 2 33 33 H 1.09003 * 109.46594 * 303.35048 * 11 10 8 34 34 H 1.09000 * 109.47451 * 63.34379 * 11 10 8 35 35 H 0.97009 * 119.99839 * 185.01272 * 16 15 13 36 36 H 1.09001 * 117.49915 * 0.02562 * 21 12 11 37 37 H 1.09000 * 117.49945 * 145.02013 * 21 12 11 38 38 H 1.09004 * 117.49339 * 214.97725 * 22 12 11 39 39 H 1.08991 * 117.50151 * 359.97438 * 22 12 11 40 40 H 1.07998 * 126.49946 * 180.02562 * 23 3 2 41 41 H 1.08997 * 109.47450 * 270.16807 * 28 27 2 42 42 H 1.09003 * 109.46759 * 30.16925 * 28 27 2 43 43 H 1.09000 * 109.47013 * 150.16590 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3203 1.1252 0.0000 4 6 1.8783 2.5190 0.0005 5 6 2.7661 3.5246 0.3274 6 6 2.3700 4.8958 0.2099 7 7 2.0556 5.9834 0.1166 8 6 4.1165 3.1883 0.7955 9 8 5.0543 3.2235 0.0225 10 8 4.3166 2.8403 2.0829 11 6 5.6621 2.4427 2.4568 12 6 5.6763 2.0069 3.9233 13 6 5.1465 3.0182 4.9070 14 1 4.5909 2.6896 5.7729 15 6 5.3710 4.3630 4.7015 16 7 6.0394 4.7637 3.6422 17 14 4.7259 5.6157 5.9279 18 1 4.0120 4.9129 7.0242 19 1 5.8625 6.3873 6.4916 20 1 3.7898 6.5425 5.2426 21 6 6.8277 1.1104 4.3828 22 6 5.4209 0.5285 4.2234 23 6 3.6615 0.6646 -0.0006 24 6 3.6150 -0.6967 -0.0015 25 6 4.7477 -1.5728 -0.0029 26 7 5.6462 -2.2679 -0.0010 27 7 2.2938 -1.0886 -0.0057 28 6 1.8214 -2.4753 -0.0134 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 0.8575 2.7619 -0.2548 33 1 5.9836 1.6125 1.8278 34 1 6.3408 3.2849 2.3215 35 1 6.2604 5.7021 3.5345 36 1 7.5755 0.8314 3.6404 37 1 7.2019 1.2518 5.3968 38 1 4.8702 0.2873 5.1326 39 1 5.2425 -0.1335 3.3761 40 1 4.5511 1.2770 -0.0004 41 1 1.7010 -2.8239 1.0122 42 1 0.8634 -2.5298 -0.5306 43 1 2.5483 -3.1038 -0.5279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:11 Heat of formation + Delta-G solvation = 60.638768 kcal Electronic energy + Delta-G solvation = -29306.906781 eV Core-core repulsion = 25319.935409 eV Total energy + Delta-G solvation = -3986.971372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.72609 -41.18729 -38.66647 -37.82121 -37.66763 -36.67342 -35.58100 -34.18125 -33.37733 -32.49565 -28.65588 -27.98689 -27.72293 -27.33900 -25.46632 -23.16241 -22.85585 -22.30659 -21.09749 -20.73766 -19.45691 -18.81795 -18.52844 -17.67369 -17.22752 -16.81418 -16.73760 -16.50651 -15.93578 -15.51680 -15.16220 -14.93004 -14.79589 -14.73292 -14.64210 -14.29144 -14.23613 -13.99115 -13.86899 -13.74474 -13.59549 -13.53548 -13.41353 -13.06895 -13.03567 -12.93832 -12.82777 -12.70454 -12.55345 -12.31227 -12.13526 -11.79852 -11.33936 -11.21725 -11.15835 -10.90186 -10.69166 -10.14063 -9.69330 -8.85428 -8.00822 -6.18550 -0.39915 0.29812 1.03834 1.09871 1.39680 1.44088 1.53510 1.53539 1.66769 1.87312 2.10278 2.29842 2.41808 2.51568 2.77387 3.00041 3.07592 3.57249 3.75171 3.77222 3.90933 3.96443 4.13399 4.22134 4.37488 4.40123 4.50809 4.58682 4.65445 4.69955 4.75585 4.82057 4.89363 4.96681 4.99211 5.02090 5.16331 5.20952 5.31700 5.45264 5.45815 5.51690 5.72773 5.80692 5.87516 6.04536 6.29866 6.33687 6.42408 6.78661 6.96361 7.45980 8.93038 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.004740 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.438960 B = 5905.831420 C = 7404.140637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.167 3.833 3 C -0.226 4.226 4 C 0.142 3.858 5 C -0.164 4.164 6 C 0.291 3.709 7 N -0.458 5.458 8 C 0.524 3.476 9 O -0.545 6.545 10 O -0.317 6.317 11 C 0.130 3.870 12 C 0.012 3.988 13 C -0.486 4.486 14 H 0.060 0.940 15 C 0.030 3.970 16 N -0.908 5.908 17 Si 0.949 3.051 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.290 1.290 21 C -0.192 4.192 22 C -0.179 4.179 23 C -0.102 4.102 24 C 0.030 3.970 25 C 0.295 3.705 26 N -0.443 5.443 27 N -0.402 5.402 28 C 0.050 3.950 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.208 0.792 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.364 -15.766 -9.438 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.041 3.959 3 C -0.231 4.231 4 C 0.119 3.881 5 C -0.169 4.169 6 C -0.022 4.022 7 N -0.136 5.136 8 C 0.368 3.632 9 O -0.438 6.438 10 O -0.230 6.230 11 C 0.056 3.944 12 C 0.012 3.988 13 C -0.524 4.524 14 H 0.078 0.922 15 C -0.170 4.170 16 N -0.547 5.547 17 Si 0.775 3.225 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.216 1.216 21 C -0.229 4.229 22 C -0.216 4.216 23 C -0.129 4.129 24 C -0.079 4.079 25 C -0.020 4.020 26 N -0.120 5.120 27 N -0.074 5.074 28 C -0.089 4.089 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.225 0.775 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.156 0.844 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.185 -15.422 -9.839 25.100 hybrid contribution 1.122 0.910 0.696 1.604 sum -16.063 -14.512 -9.143 23.500 Atomic orbital electron populations 1.20982 0.81792 1.06873 1.06355 1.21746 0.95559 0.83037 0.95508 1.18377 0.91589 0.92653 1.20501 1.22570 0.97800 0.86952 0.80746 1.16746 0.94388 0.86910 1.18897 1.24998 0.93043 0.91960 0.92169 1.81195 1.09326 1.10990 1.12050 1.20987 0.89098 0.72174 0.80912 1.90793 1.44881 1.51239 1.56920 1.86672 1.35266 1.75008 1.26091 1.22599 0.80456 0.97795 0.93541 1.19023 0.99070 0.89153 0.91567 1.20716 1.34048 0.90399 1.07197 0.92189 1.25588 0.95017 0.99956 0.96415 1.69928 1.40980 1.15897 1.27940 0.85638 0.78156 0.79219 0.79507 1.18330 1.20701 1.21631 1.22993 0.91385 1.07136 1.01435 1.22871 0.98922 0.97761 1.02023 1.21855 0.98908 0.92602 0.99544 1.14900 0.81050 0.89526 1.22467 1.24493 0.92742 0.92306 0.92421 1.81290 1.09770 1.09040 1.11926 1.43828 1.02723 1.08856 1.52007 1.22705 1.03824 0.76365 1.05992 0.86362 0.88056 0.87221 0.77519 0.95754 0.89689 0.93412 0.90736 0.89632 0.89366 0.90313 0.85290 0.88357 0.84402 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 9.64 71.23 0.69 0.68 16 2 C 0.17 1.91 6.95 42.32 0.29 2.21 16 3 C -0.23 -4.63 5.94 -20.18 -0.12 -4.75 16 4 C 0.14 2.79 9.53 24.30 0.23 3.02 16 5 C -0.16 -5.29 5.77 -19.82 -0.11 -5.41 16 6 C 0.29 10.24 15.36 88.33 1.36 11.60 16 7 N -0.46 -17.55 18.54 19.00 0.35 -17.20 16 8 C 0.52 22.44 4.26 70.07 0.30 22.74 16 9 O -0.55 -25.99 15.34 19.57 0.30 -25.69 16 10 O -0.32 -15.17 9.88 -57.63 -0.57 -15.74 16 11 C 0.13 6.55 4.41 71.98 0.32 6.86 16 12 C 0.01 0.61 2.17 -52.93 -0.12 0.49 16 13 C -0.49 -26.26 8.81 25.60 0.23 -26.03 16 14 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 15 C 0.03 1.63 5.36 84.66 0.45 2.08 16 16 N -0.91 -52.70 10.36 21.45 0.22 -52.48 16 17 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 C -0.19 -8.50 9.96 30.62 0.30 -8.19 16 22 C -0.18 -7.47 9.93 30.62 0.30 -7.17 16 23 C -0.10 -2.91 9.25 22.68 0.21 -2.70 16 24 C 0.03 0.71 6.68 38.98 0.26 0.97 16 25 C 0.29 8.21 15.10 88.33 1.33 9.55 16 26 N -0.44 -13.97 18.54 19.00 0.35 -13.62 16 27 N -0.40 -5.52 3.12 -522.74 -1.63 -7.16 16 28 C 0.05 0.23 10.45 127.77 1.34 1.57 16 29 H 0.12 -0.51 8.14 -2.39 -0.02 -0.52 16 30 H 0.10 -0.35 7.63 -2.39 -0.02 -0.37 16 31 H 0.11 -0.13 7.83 -2.39 -0.02 -0.15 16 32 H 0.21 1.54 7.93 -2.91 -0.02 1.52 16 33 H 0.02 1.17 7.87 -2.39 -0.02 1.15 16 34 H 0.09 4.92 5.85 -2.39 -0.01 4.90 16 35 H 0.26 14.56 8.32 -92.70 -0.77 13.79 16 36 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 39 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.13 4.79 4.46 -2.91 -0.01 4.77 16 41 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.14 -0.46 7.55 -2.39 -0.02 -0.48 16 43 H 0.08 0.53 7.74 -2.39 -0.02 0.51 16 Total: -1.00 -81.55 388.05 9.38 -72.17 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.07 Total: 5.94 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 7.26 Total: 7.52 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -0.71 Total: -90.46 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.27 Total: -41.43 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -81.55 9.38 -72.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.809 kcal (2) G-P(sol) polarization free energy of solvation -81.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds