Wall clock time and date at job start Tue Mar 31 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86803 * 119.99405 * 2 1 4 4 H 1.48507 * 109.46674 * 239.99905 * 3 2 1 5 5 H 1.48505 * 109.47610 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47261 * 120.00420 * 3 2 1 7 7 C 1.38630 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00080 * 174.51703 * 9 7 2 11 11 C 1.38735 * 120.08743 * 354.19171 * 10 9 7 12 12 C 1.38343 * 119.97575 * 180.29716 * 11 10 9 13 13 F 1.35096 * 119.92237 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.15584 * 359.97438 * 12 11 10 15 15 C 1.38188 * 120.17548 * 0.02562 * 14 12 11 16 16 C 1.38712 * 120.02011 * 0.02562 * 15 14 12 17 17 N 1.40093 * 120.07411 * 179.97438 * 16 15 14 18 18 C 1.34777 * 120.00112 * 34.07260 * 17 16 15 19 19 O 1.21296 * 120.00098 * 5.60609 * 18 17 16 20 20 C 1.50699 * 120.00087 * 185.61151 * 18 17 16 21 21 C 1.52993 * 109.47251 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47215 * 179.97438 * 21 20 18 23 23 C 1.53003 * 109.47281 * 179.97438 * 22 21 20 24 24 N 1.46498 * 109.47339 * 179.97438 * 23 22 21 25 25 C 1.34777 * 120.00166 * 179.97438 * 24 23 22 26 26 N 1.34773 * 119.99989 * 179.97438 * 25 24 23 27 27 O 1.21587 * 119.99700 * 0.02562 * 25 24 23 28 28 H 0.97003 * 120.00251 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.01341 * 0.25311 * 11 10 9 30 30 H 1.07996 * 119.91659 * 179.97438 * 14 12 11 31 31 H 1.07997 * 119.99298 * 180.02562 * 15 14 12 32 32 H 0.97001 * 119.99643 * 214.07169 * 17 16 15 33 33 H 1.09007 * 109.46849 * 299.99844 * 20 18 17 34 34 H 1.08997 * 109.47367 * 59.99255 * 20 18 17 35 35 H 1.09007 * 109.47069 * 299.99713 * 21 20 18 36 36 H 1.09006 * 109.47430 * 59.99583 * 21 20 18 37 37 H 1.09004 * 109.47205 * 299.99443 * 22 21 20 38 38 H 1.08995 * 109.47687 * 59.99713 * 22 21 20 39 39 H 1.09001 * 109.47086 * 299.99321 * 23 22 21 40 40 H 1.09006 * 109.47372 * 59.99585 * 23 22 21 41 41 H 0.97002 * 119.99641 * 0.02562 * 24 23 22 42 42 H 0.96997 * 120.00326 * 0.02562 * 26 25 24 43 43 H 0.97000 * 119.99962 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2845 2.7466 -0.0006 6 1 3.1034 1.6966 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0698 -3.5039 -0.1145 11 6 3.4356 -3.4283 -0.3460 12 6 4.1811 -4.5872 -0.4689 13 9 5.5109 -4.5123 -0.6948 14 6 3.5670 -5.8245 -0.3610 15 6 2.2070 -5.9072 -0.1305 16 6 1.4524 -4.7499 -0.0071 17 7 0.0735 -4.8325 0.2261 18 6 -0.4243 -5.8351 0.9767 19 8 0.3278 -6.6065 1.5340 20 6 -1.9152 -5.9979 1.1236 21 6 -2.2109 -7.2024 2.0193 22 6 -3.7246 -7.3673 2.1689 23 6 -4.0204 -8.5723 3.0642 24 7 -5.4697 -8.7299 3.2080 25 6 -5.9675 -9.7333 3.9575 26 7 -7.3009 -9.8779 4.0902 27 8 -5.2136 -10.5075 4.5148 28 1 -0.4851 0.8401 0.0004 29 1 3.9166 -2.4650 -0.4308 30 1 4.1526 -6.7267 -0.4580 31 1 1.7315 -6.8732 -0.0465 32 1 -0.5231 -4.1680 -0.1528 33 1 -2.3364 -5.0984 1.5729 34 1 -2.3618 -6.1570 0.1421 35 1 -1.7898 -8.1017 1.5696 36 1 -1.7643 -7.0438 3.0009 37 1 -4.1453 -6.4681 2.6189 38 1 -4.1717 -7.5258 1.1876 39 1 -3.5998 -9.4715 2.6138 40 1 -3.5733 -8.4143 4.0457 41 1 -6.0712 -8.1124 2.7630 42 1 -7.9023 -9.2600 3.6460 43 1 -7.6591 -10.5998 4.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760970276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:09 Heat of formation + Delta-G solvation = -130.772828 kcal Electronic energy + Delta-G solvation = -27829.502003 eV Core-core repulsion = 23403.461177 eV Total energy + Delta-G solvation = -4426.040826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.28200 -40.17480 -40.03366 -38.68342 -36.56861 -36.11437 -34.19699 -34.06157 -33.39878 -32.44937 -29.89556 -29.34128 -28.02906 -25.55939 -24.57728 -22.52928 -21.81083 -21.55106 -21.08928 -19.86993 -18.51250 -18.37959 -17.90049 -17.57271 -16.74779 -16.62021 -16.35034 -15.62202 -15.28943 -15.20783 -15.10857 -14.96405 -14.54203 -14.45016 -14.29912 -14.00113 -13.71286 -13.54496 -13.30001 -13.00134 -12.57717 -12.36455 -12.19217 -11.87368 -11.74471 -11.65691 -11.39080 -11.33185 -10.98929 -10.80683 -10.75161 -10.60083 -10.58806 -10.05092 -9.86164 -9.73212 -9.37994 -9.31241 -8.99326 -7.92981 -7.15034 -6.64380 -4.21920 1.76160 2.08171 2.59048 2.92463 2.94586 3.05315 3.05697 3.08096 3.48453 3.82155 4.15438 4.29736 4.53980 4.72671 4.78075 4.82973 4.91782 5.07630 5.09870 5.17833 5.31067 5.48352 5.53623 5.60808 5.63817 5.71259 5.73548 5.98797 6.06613 6.14715 6.19288 6.22476 6.37067 6.47981 6.56401 6.72285 6.87834 6.89021 7.02100 7.15182 7.59688 7.62202 7.78936 7.89245 8.31290 8.52722 8.81727 9.42346 10.52638 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002106 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.707989 B =13290.390812 C =15389.805051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.158 3.842 11 C -0.258 4.258 12 C 0.130 3.870 13 F -0.151 7.151 14 C -0.228 4.228 15 C -0.049 4.049 16 C 0.060 3.940 17 N -0.652 5.652 18 C 0.507 3.493 19 O -0.536 6.536 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.131 4.131 23 C 0.135 3.865 24 N -0.745 5.745 25 C 0.703 3.297 26 N -0.870 5.870 27 O -0.595 6.595 28 H 0.273 0.727 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.415 0.585 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.396 0.604 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -10.881 1.005 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.070 6.070 10 C 0.102 3.898 11 C -0.279 4.279 12 C 0.110 3.890 13 F -0.130 7.130 14 C -0.249 4.249 15 C -0.070 4.070 16 C -0.034 4.034 17 N -0.296 5.296 18 C 0.295 3.705 19 O -0.414 6.414 20 C -0.178 4.178 21 C -0.138 4.138 22 C -0.169 4.169 23 C 0.011 3.989 24 N -0.401 5.401 25 C 0.400 3.600 26 N -0.438 5.438 27 O -0.473 6.473 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.251 0.749 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.224 0.776 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.967 -11.774 1.828 16.887 hybrid contribution -0.275 1.656 -0.480 1.746 sum -12.242 -10.118 1.348 15.939 Atomic orbital electron populations 1.69993 1.05938 1.28145 1.45301 1.25279 0.95921 0.98859 0.96104 0.85751 0.78771 0.79404 0.79437 1.19333 1.20162 1.19338 1.21294 0.91961 0.80412 1.53113 0.88902 1.83925 1.33872 1.11303 1.77934 1.18835 0.89549 0.87056 0.94374 1.20876 0.94189 0.98383 1.14476 1.17448 0.76679 0.94250 1.00587 1.91412 1.31966 1.97354 1.92242 1.20456 0.95217 0.95679 1.13508 1.20456 0.92665 0.96935 0.96897 1.16852 0.83752 0.91032 1.11758 1.43236 1.06347 1.29268 1.50773 1.20725 0.91101 0.80820 0.77841 1.90688 1.60500 1.43978 1.46197 1.21633 0.92619 1.01063 1.02494 1.21212 0.93874 0.97869 1.00888 1.21819 0.97420 0.97731 0.99950 1.21273 0.78584 0.98563 1.00459 1.45145 1.08632 1.32305 1.54066 1.16005 0.82647 0.81595 0.79704 1.43001 1.05576 1.37241 1.57968 1.90990 1.57758 1.46193 1.52309 0.91747 0.83952 0.85901 0.84730 0.74886 0.88518 0.88736 0.90711 0.90616 0.91015 0.91133 0.91327 0.91287 0.76994 0.77620 0.75429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.01 13.67 55.48 0.76 -22.26 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.42 29.55 -169.99 -5.02 14.39 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.20 9.44 30.88 0.29 -9.91 16 8 H 0.09 2.28 5.30 -52.48 -0.28 2.00 16 9 O -0.17 -4.30 9.30 0.05 0.00 -4.29 16 10 C 0.16 3.59 6.66 -38.94 -0.26 3.33 16 11 C -0.26 -5.59 9.11 -39.36 -0.36 -5.95 16 12 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 14 C -0.23 -4.20 10.02 -39.49 -0.40 -4.59 16 15 C -0.05 -0.92 8.65 -39.42 -0.34 -1.27 16 16 C 0.06 1.22 6.28 -83.45 -0.52 0.69 16 17 N -0.65 -11.33 5.20 -9.71 -0.05 -11.38 16 18 C 0.51 7.94 7.56 -10.99 -0.08 7.86 16 19 O -0.54 -10.00 13.74 5.54 0.08 -9.93 16 20 C -0.14 -1.44 5.70 -27.89 -0.16 -1.60 16 21 C -0.10 -0.96 4.50 -26.74 -0.12 -1.08 16 22 C -0.13 -0.90 5.33 -26.73 -0.14 -1.04 16 23 C 0.14 1.15 5.67 -4.04 -0.02 1.13 16 24 N -0.75 -5.40 5.56 -65.22 -0.36 -5.76 16 25 C 0.70 6.79 8.84 -86.92 -0.77 6.02 16 26 N -0.87 -4.39 8.88 27.63 0.25 -4.15 16 27 O -0.59 -8.83 17.18 5.29 0.09 -8.74 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.14 3.08 5.71 -52.49 -0.30 2.78 16 30 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.13 2.40 6.48 -52.49 -0.34 2.06 16 32 H 0.41 6.80 8.55 -40.82 -0.35 6.45 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.40 1.61 8.49 -40.82 -0.35 1.26 16 42 H 0.40 0.70 8.84 -40.82 -0.36 0.34 16 43 H 0.41 1.79 8.93 -40.82 -0.36 1.43 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -34.10 375.94 -7.10 -41.21 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.27 Total: 11.18 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.27 Total: -3.11 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.59 Total: -43.54 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.10 -7.10 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760970276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.566 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds