Wall clock time and date at job start Tue Mar 31 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86803 * 119.99405 * 2 1 4 4 H 1.48507 * 109.46674 * 239.99905 * 3 2 1 5 5 H 1.48505 * 109.47610 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47261 * 120.00420 * 3 2 1 7 7 C 1.38630 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00080 * 174.51703 * 9 7 2 11 11 C 1.38735 * 120.08743 * 354.19171 * 10 9 7 12 12 C 1.38343 * 119.97575 * 180.29716 * 11 10 9 13 13 F 1.35096 * 119.92237 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.15584 * 359.97438 * 12 11 10 15 15 C 1.38188 * 120.17548 * 0.02562 * 14 12 11 16 16 C 1.38712 * 120.02011 * 0.02562 * 15 14 12 17 17 N 1.40093 * 120.07411 * 179.97438 * 16 15 14 18 18 C 1.34777 * 120.00112 * 34.07260 * 17 16 15 19 19 O 1.21296 * 120.00098 * 5.60609 * 18 17 16 20 20 C 1.50699 * 120.00087 * 185.61151 * 18 17 16 21 21 C 1.52993 * 109.47251 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47215 * 179.97438 * 21 20 18 23 23 C 1.53003 * 109.47281 * 179.97438 * 22 21 20 24 24 N 1.46498 * 109.47339 * 179.97438 * 23 22 21 25 25 C 1.34777 * 120.00166 * 179.97438 * 24 23 22 26 26 N 1.34773 * 119.99989 * 179.97438 * 25 24 23 27 27 O 1.21587 * 119.99700 * 0.02562 * 25 24 23 28 28 H 0.97003 * 120.00251 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.01341 * 0.25311 * 11 10 9 30 30 H 1.07996 * 119.91659 * 179.97438 * 14 12 11 31 31 H 1.07997 * 119.99298 * 180.02562 * 15 14 12 32 32 H 0.97001 * 119.99643 * 214.07169 * 17 16 15 33 33 H 1.09007 * 109.46849 * 299.99844 * 20 18 17 34 34 H 1.08997 * 109.47367 * 59.99255 * 20 18 17 35 35 H 1.09007 * 109.47069 * 299.99713 * 21 20 18 36 36 H 1.09006 * 109.47430 * 59.99583 * 21 20 18 37 37 H 1.09004 * 109.47205 * 299.99443 * 22 21 20 38 38 H 1.08995 * 109.47687 * 59.99713 * 22 21 20 39 39 H 1.09001 * 109.47086 * 299.99321 * 23 22 21 40 40 H 1.09006 * 109.47372 * 59.99585 * 23 22 21 41 41 H 0.97002 * 119.99641 * 0.02562 * 24 23 22 42 42 H 0.96997 * 120.00326 * 0.02562 * 26 25 24 43 43 H 0.97000 * 119.99962 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2845 2.7466 -0.0006 6 1 3.1034 1.6966 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0698 -3.5039 -0.1145 11 6 3.4356 -3.4283 -0.3460 12 6 4.1811 -4.5872 -0.4689 13 9 5.5109 -4.5123 -0.6948 14 6 3.5670 -5.8245 -0.3610 15 6 2.2070 -5.9072 -0.1305 16 6 1.4524 -4.7499 -0.0071 17 7 0.0735 -4.8325 0.2261 18 6 -0.4243 -5.8351 0.9767 19 8 0.3278 -6.6065 1.5340 20 6 -1.9152 -5.9979 1.1236 21 6 -2.2109 -7.2024 2.0193 22 6 -3.7246 -7.3673 2.1689 23 6 -4.0204 -8.5723 3.0642 24 7 -5.4697 -8.7299 3.2080 25 6 -5.9675 -9.7333 3.9575 26 7 -7.3009 -9.8779 4.0902 27 8 -5.2136 -10.5075 4.5148 28 1 -0.4851 0.8401 0.0004 29 1 3.9166 -2.4650 -0.4308 30 1 4.1526 -6.7267 -0.4580 31 1 1.7315 -6.8732 -0.0465 32 1 -0.5231 -4.1680 -0.1528 33 1 -2.3364 -5.0984 1.5729 34 1 -2.3618 -6.1570 0.1421 35 1 -1.7898 -8.1017 1.5696 36 1 -1.7643 -7.0438 3.0009 37 1 -4.1453 -6.4681 2.6189 38 1 -4.1717 -7.5258 1.1876 39 1 -3.5998 -9.4715 2.6138 40 1 -3.5733 -8.4143 4.0457 41 1 -6.0712 -8.1124 2.7630 42 1 -7.9023 -9.2600 3.6460 43 1 -7.6591 -10.5998 4.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760970276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:09 Heat of formation + Delta-G solvation = -157.268065 kcal Electronic energy + Delta-G solvation = -27830.650922 eV Core-core repulsion = 23403.461177 eV Total energy + Delta-G solvation = -4427.189746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.84795 -41.61083 -40.80350 -40.22597 -38.09445 -37.00362 -35.53095 -34.95424 -34.31407 -34.09442 -31.23129 -30.70161 -29.32223 -27.40113 -25.52965 -24.02327 -23.20562 -22.32263 -21.99866 -21.12970 -20.15269 -19.50160 -19.15427 -18.34693 -18.09198 -17.97960 -17.23642 -17.02169 -16.84484 -16.54709 -16.30995 -15.97871 -15.76171 -15.55114 -15.49628 -15.34110 -15.22707 -15.08861 -14.72820 -14.12866 -13.95259 -13.72395 -13.44549 -13.28168 -13.04639 -12.69832 -12.56384 -12.44471 -12.33329 -12.16651 -12.06595 -11.68935 -11.52128 -11.49216 -11.17194 -10.85155 -10.76343 -10.72833 -9.94551 -9.57807 -8.76559 -8.51730 -6.17296 0.16495 0.44699 1.37323 1.45234 1.50556 1.65570 1.96241 2.13125 2.18308 2.23865 2.65763 3.04802 3.15989 3.43945 3.65143 3.76721 3.83619 3.94093 4.06379 4.15822 4.34241 4.36777 4.41921 4.52081 4.67000 4.79802 4.85384 4.89926 4.91167 5.01284 5.07882 5.21460 5.29237 5.33673 5.35378 5.43070 5.52481 5.57850 5.92489 5.93113 6.02253 6.05859 6.54149 6.92939 7.14111 7.20845 7.61103 7.67734 8.68566 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002106 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.707989 B =13290.390812 C =15389.805051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.096 0.904 9 O -0.200 6.200 10 C 0.130 3.870 11 C -0.266 4.266 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.205 4.205 15 C -0.051 4.051 16 C 0.062 3.938 17 N -0.655 5.655 18 C 0.504 3.496 19 O -0.568 6.568 20 C -0.128 4.128 21 C -0.097 4.097 22 C -0.115 4.115 23 C 0.137 3.863 24 N -0.731 5.731 25 C 0.694 3.306 26 N -0.848 5.848 27 O -0.653 6.653 28 H 0.276 0.724 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.415 0.585 42 H 0.415 0.585 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 -11.272 0.354 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.114 0.886 9 O -0.105 6.105 10 C 0.076 3.924 11 C -0.287 4.287 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.225 4.225 15 C -0.072 4.072 16 C -0.033 4.033 17 N -0.300 5.300 18 C 0.295 3.705 19 O -0.447 6.447 20 C -0.167 4.167 21 C -0.136 4.136 22 C -0.152 4.152 23 C 0.012 3.988 24 N -0.388 5.388 25 C 0.391 3.609 26 N -0.417 5.417 27 O -0.536 6.536 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.256 0.744 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.252 0.748 42 H 0.246 0.754 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.998 -12.167 1.145 17.841 hybrid contribution 0.069 1.515 -0.276 1.542 sum -12.929 -10.652 0.869 16.774 Atomic orbital electron populations 1.70092 1.07405 1.29105 1.47271 1.26340 0.96867 1.01995 0.95494 0.84770 0.77621 0.74999 0.79695 1.18475 1.19281 1.18802 1.21661 0.92431 0.81204 1.53969 0.88630 1.83896 1.34548 1.11779 1.80275 1.19212 0.90154 0.87345 0.95644 1.20961 0.94218 0.98963 1.14533 1.17459 0.76950 0.94208 1.01213 1.91426 1.31396 1.97338 1.92215 1.20864 0.95206 0.96276 1.10126 1.20695 0.92924 0.96986 0.96551 1.17156 0.85422 0.90566 1.10139 1.43423 1.05288 1.30023 1.51301 1.21707 0.93194 0.79324 0.76293 1.90666 1.61886 1.44931 1.47217 1.21704 0.88487 1.01945 1.04558 1.21164 0.95818 0.97117 0.99487 1.21672 0.95295 0.97383 1.00873 1.21154 0.79223 0.98777 0.99675 1.44937 1.08420 1.32005 1.53487 1.16308 0.83552 0.81439 0.79558 1.42786 1.04197 1.37436 1.57267 1.90951 1.59514 1.48402 1.54718 0.91504 0.84730 0.82518 0.83288 0.74444 0.86980 0.85498 0.91634 0.92702 0.89508 0.88766 0.92803 0.93330 0.74784 0.75383 0.74816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.50 13.67 21.61 0.30 -49.21 16 2 C -0.01 -0.36 5.49 84.83 0.47 0.11 16 3 Si 1.01 40.10 29.55 68.60 2.03 42.13 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.42 -22.39 9.44 67.91 0.64 -21.75 16 8 H 0.10 4.86 5.30 -2.91 -0.02 4.84 16 9 O -0.20 -10.62 9.30 -22.74 -0.21 -10.83 16 10 C 0.13 6.03 6.66 22.69 0.15 6.18 16 11 C -0.27 -11.65 9.11 22.41 0.20 -11.45 16 12 C 0.12 4.69 7.29 22.37 0.16 4.85 16 13 F -0.15 -5.31 17.26 44.97 0.78 -4.53 16 14 C -0.20 -7.07 10.02 22.33 0.22 -6.84 16 15 C -0.05 -1.85 8.65 22.37 0.19 -1.66 16 16 C 0.06 2.50 6.28 38.23 0.24 2.74 16 17 N -0.66 -22.53 5.20 -303.03 -1.57 -24.10 16 18 C 0.50 15.26 7.56 87.66 0.66 15.93 16 19 O -0.57 -20.80 13.74 -3.08 -0.04 -20.85 16 20 C -0.13 -2.37 5.70 29.85 0.17 -2.20 16 21 C -0.10 -1.73 4.50 30.59 0.14 -1.59 16 22 C -0.11 -1.28 5.33 30.59 0.16 -1.12 16 23 C 0.14 2.21 5.67 86.38 0.49 2.70 16 24 N -0.73 -9.37 5.56 -478.53 -2.66 -12.03 16 25 C 0.69 12.80 8.84 179.06 1.58 14.38 16 26 N -0.85 -7.08 8.88 -184.75 -1.64 -8.72 16 27 O -0.65 -19.75 17.18 -3.99 -0.07 -19.82 16 28 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.14 6.00 5.71 -2.91 -0.02 5.98 16 30 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16 31 H 0.15 5.01 6.48 -2.91 -0.02 4.99 16 32 H 0.42 13.70 8.55 -92.71 -0.79 12.91 16 33 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.29 8.10 -2.38 -0.02 1.27 16 36 H 0.05 1.21 8.10 -2.38 -0.02 1.19 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.42 2.14 8.49 -92.71 -0.79 1.35 16 42 H 0.42 0.37 8.84 -92.71 -0.82 -0.45 16 43 H 0.42 3.02 8.93 -92.71 -0.83 2.19 16 Total: -1.00 -77.42 375.94 0.28 -77.13 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -2.11 Total: 30.53 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.49 Total: 0.29 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -5.58 Total: -94.06 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.32 Total: -51.50 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -77.42 0.28 -77.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760970276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.135 kcal (2) G-P(sol) polarization free energy of solvation -77.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds