Wall clock time and date at job start Tue Mar 31 2020 22:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38060 * 119.96296 * 2 1 4 4 C 1.38524 * 120.40410 * 180.02562 * 3 2 1 5 5 C 1.37843 * 120.33783 * 359.70927 * 4 3 2 6 6 C 1.39648 * 119.91849 * 0.59076 * 5 4 3 7 7 C 1.47518 * 120.19702 * 179.69544 * 6 5 4 8 8 O 1.21586 * 119.99860 * 185.39945 * 7 6 5 9 9 N 1.34780 * 119.99878 * 5.67572 * 7 6 5 10 10 C 1.46505 * 119.99549 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46626 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00019 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99540 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00269 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99880 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47188 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47219 * 119.99846 * 15 13 11 18 18 H 1.48499 * 109.47036 * 240.00147 * 15 13 11 19 19 C 1.38829 * 119.96791 * 180.02562 * 2 1 3 20 20 N 1.39199 * 120.16843 * 359.97438 * 19 2 1 21 21 C 1.34774 * 119.99832 * 292.52011 * 20 19 2 22 22 O 1.21522 * 119.99823 * 5.30754 * 21 20 19 23 23 C 1.48100 * 119.99900 * 185.30240 * 21 20 19 24 24 C 1.39834 * 120.92516 * 359.71872 * 23 21 20 25 25 C 1.38148 * 118.99872 * 179.75285 * 24 23 21 26 26 N 1.31813 * 120.89664 * 0.53532 * 25 24 23 27 27 C 1.31824 * 122.05485 * 359.71566 * 26 25 24 28 28 C 1.38136 * 120.89619 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47016 * 276.46130 * 1 2 3 30 30 H 1.08999 * 109.47252 * 36.46090 * 1 2 3 31 31 H 1.09001 * 109.47297 * 156.46287 * 1 2 3 32 32 H 1.08000 * 119.79795 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.83057 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.04005 * 180.28093 * 5 4 3 35 35 H 0.96990 * 120.00183 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.46873 * 299.99875 * 10 9 7 37 37 H 1.08996 * 109.47023 * 60.00086 * 10 9 7 38 38 H 0.96999 * 120.00315 * 180.02562 * 14 13 11 39 39 H 0.96996 * 119.99778 * 112.51704 * 20 19 2 40 40 H 1.07995 * 120.50056 * 359.97438 * 24 23 21 41 41 H 1.08004 * 119.54960 * 180.25636 * 25 24 23 42 42 H 1.07997 * 119.54815 * 179.97438 * 27 26 25 43 43 H 1.08007 * 120.49999 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1961 0.0000 4 6 3.5817 1.2067 -0.0005 5 6 4.2871 0.0225 0.0050 6 6 3.6037 -1.1953 -0.0014 7 6 4.3524 -2.4664 -0.0023 8 8 3.7582 -3.5219 -0.1069 9 7 5.6948 -2.4578 0.1184 10 6 6.4384 -3.7201 0.1168 11 6 7.9111 -3.4356 0.2634 12 1 8.2583 -2.4166 0.3495 13 6 8.8150 -4.4764 0.2886 14 7 8.3921 -5.7174 0.1843 15 14 10.6403 -4.1240 0.4710 16 1 10.8541 -2.6577 0.5681 17 1 11.1510 -4.7816 1.7006 18 1 11.3670 -4.6524 -0.7113 19 6 2.2004 -1.2027 -0.0005 20 7 1.5073 -2.4098 -0.0005 21 6 0.7845 -2.7718 1.0779 22 8 0.6587 -2.0034 2.0108 23 6 0.1435 -4.1061 1.1258 24 6 0.2707 -5.0031 0.0606 25 6 -0.3396 -6.2393 0.1496 26 7 -1.0419 -6.5723 1.2142 27 6 -1.1911 -5.7551 2.2377 28 6 -0.6107 -4.5016 2.2350 29 1 -0.3633 0.1156 1.0212 30 1 -0.3634 0.8265 -0.6107 31 1 -0.3634 -0.9422 -0.4104 32 1 1.6526 2.1291 -0.0004 33 1 4.1117 2.1478 -0.0009 34 1 5.3670 0.0364 0.0091 35 1 6.1685 -1.6159 0.2054 36 1 6.1032 -4.3402 0.9482 37 1 6.2617 -4.2447 -0.8221 38 1 9.0280 -6.4497 0.2024 39 1 1.5445 -2.9904 -0.7767 40 1 0.8404 -4.7349 -0.8168 41 1 -0.2437 -6.9406 -0.6661 42 1 -1.7758 -6.0696 3.0895 43 1 -0.7375 -3.8370 3.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787622188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:30 Heat of formation + Delta-G solvation = -4.009606 kcal Electronic energy + Delta-G solvation = -28509.605272 eV Core-core repulsion = 24519.830537 eV Total energy + Delta-G solvation = -3989.774736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.10288 -40.09899 -38.79428 -37.92403 -35.07503 -34.15153 -33.09080 -32.69369 -32.18018 -31.41189 -29.98715 -27.57202 -26.79826 -25.13150 -23.91583 -23.53394 -22.15962 -22.00114 -20.60603 -19.69031 -18.65886 -17.80840 -17.21144 -16.27852 -16.18454 -15.86129 -15.85134 -15.52557 -15.09682 -14.80183 -14.56196 -14.44159 -14.29838 -13.97001 -13.80817 -13.69392 -13.60849 -13.49696 -12.82055 -12.50355 -12.19405 -12.03638 -11.86625 -11.80269 -11.69183 -11.48098 -11.00186 -10.95647 -10.40922 -10.37934 -10.03176 -9.88041 -9.66175 -9.44631 -9.35311 -9.13976 -8.86127 -8.78473 -8.54802 -7.96514 -6.22282 -4.29499 0.55797 0.88561 0.94303 1.20245 2.73099 2.99865 3.20139 3.21358 3.27477 3.30288 3.73452 3.88789 4.00439 4.26543 4.30998 4.41071 4.62557 4.69435 4.78576 4.82011 4.91595 4.99977 5.14365 5.16189 5.27268 5.34191 5.41711 5.55268 5.58057 5.58391 5.68282 5.70194 5.88926 6.02311 6.11654 6.30967 6.35638 6.41188 6.45221 6.85839 7.20826 7.29565 7.32816 7.43190 7.59173 7.73690 7.89669 8.06241 8.50186 8.68876 8.94879 9.37197 10.87908 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.003534 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.460995 B = 7920.707145 C =10496.220246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.120 4.120 5 C -0.086 4.086 6 C -0.123 4.123 7 C 0.541 3.459 8 O -0.551 6.551 9 N -0.701 5.701 10 C 0.250 3.750 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.184 3.816 20 N -0.652 5.652 21 C 0.568 3.432 22 O -0.521 6.521 23 C -0.082 4.082 24 C -0.129 4.129 25 C 0.096 3.904 26 N -0.471 5.471 27 C 0.092 3.908 28 C -0.116 4.116 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.391 0.609 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.415 0.585 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 10.174 -1.824 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.115 4.115 4 C -0.138 4.138 5 C -0.106 4.106 6 C -0.128 4.128 7 C 0.326 3.674 8 O -0.432 6.432 9 N -0.349 5.349 10 C 0.130 3.870 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.090 3.910 20 N -0.301 5.301 21 C 0.356 3.644 22 O -0.397 6.397 23 C -0.093 4.093 24 C -0.150 4.150 25 C -0.060 4.060 26 N -0.180 5.180 27 C -0.065 4.065 28 C -0.137 4.137 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.224 0.776 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.255 0.745 40 H 0.160 0.840 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.720 8.883 -1.200 20.755 hybrid contribution 2.017 0.995 -0.239 2.261 sum -16.703 9.878 -1.439 19.458 Atomic orbital electron populations 1.20730 0.90633 1.02275 1.02862 1.19931 0.96511 0.91812 0.99993 1.21023 0.94213 0.97089 0.99213 1.21098 0.94067 0.98119 1.00544 1.21301 1.00275 0.91208 0.97795 1.20493 0.92949 0.94788 1.04595 1.18054 0.83104 0.87871 0.78370 1.90670 1.68876 1.32194 1.51413 1.46434 1.05554 1.12392 1.70542 1.19154 0.90003 0.79983 0.97852 1.21241 0.90775 0.93567 1.52718 0.91827 1.24943 0.99590 0.94773 0.94610 1.69978 1.34994 0.98601 1.48619 0.86354 0.84163 0.78501 0.77875 1.19594 1.20744 1.20743 1.17174 0.88796 0.85285 0.99771 1.42850 1.48233 1.20266 1.18744 1.18147 0.78162 0.86080 0.82031 1.90775 1.60495 1.52536 1.35897 1.20249 0.98628 0.94524 0.95880 1.22433 0.98662 0.94850 0.99006 1.22779 0.92791 0.94490 0.95967 1.67557 1.14681 1.35032 1.00733 1.22779 0.97306 0.89726 0.96678 1.22301 0.95473 0.97799 0.98123 0.90348 0.91503 0.92105 0.85378 0.85201 0.84873 0.77555 0.95389 0.95284 0.92442 0.74523 0.83985 0.81957 0.82055 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.61 36.00 0.31 -0.84 16 2 C -0.08 -1.02 5.56 -104.47 -0.58 -1.60 16 3 C -0.10 -1.03 9.70 -39.54 -0.38 -1.41 16 4 C -0.12 -1.28 10.02 -39.62 -0.40 -1.68 16 5 C -0.09 -1.13 9.52 -39.20 -0.37 -1.51 16 6 C -0.12 -2.00 5.89 -104.80 -0.62 -2.61 16 7 C 0.54 10.83 7.75 -12.48 -0.10 10.73 16 8 O -0.55 -12.26 14.67 5.29 0.08 -12.18 16 9 N -0.70 -14.69 5.50 -62.53 -0.34 -15.03 16 10 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 11 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.18 2.76 5.56 -83.51 -0.46 2.30 16 20 N -0.65 -9.48 2.77 -10.47 -0.03 -9.50 16 21 C 0.57 8.65 6.65 -12.21 -0.08 8.57 16 22 O -0.52 -9.07 14.92 5.35 0.08 -8.99 16 23 C -0.08 -1.09 5.91 -104.65 -0.62 -1.71 16 24 C -0.13 -1.52 9.61 -39.02 -0.38 -1.90 16 25 C 0.10 1.08 11.17 -17.59 -0.20 0.89 16 26 N -0.47 -5.75 10.34 -13.31 -0.14 -5.89 16 27 C 0.09 1.00 11.17 -17.59 -0.20 0.80 16 28 C -0.12 -1.39 9.68 -39.02 -0.38 -1.76 16 29 H 0.08 0.90 7.74 -51.93 -0.40 0.50 16 30 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.06 0.65 6.82 -51.93 -0.35 0.30 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.55 6.44 -52.49 -0.34 1.21 16 35 H 0.39 7.06 6.38 -40.82 -0.26 6.80 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.42 5.49 6.34 -40.82 -0.26 5.23 16 40 H 0.14 1.47 6.55 -52.49 -0.34 1.13 16 41 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.15 1.61 7.74 -52.48 -0.41 1.20 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -34.30 369.91 -8.81 -43.12 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.86 Total: 10.74 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -4.89 Total: 1.54 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.23 Total: -55.41 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.16 Total: -21.17 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.30 -8.81 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787622188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.107 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds