Wall clock time and date at job start Tue Mar 31 2020 23:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38601 * 119.54861 * 2 1 4 4 C 1.38587 * 119.35056 * 180.02562 * 3 2 1 5 5 C 1.38630 * 118.48850 * 0.27422 * 4 3 2 6 6 C 1.39271 * 119.06220 * 359.44011 * 5 4 3 7 7 C 1.48164 * 119.72602 * 180.26950 * 6 5 4 8 8 O 1.21514 * 120.00048 * 0.30171 * 7 6 5 9 9 N 1.34773 * 119.99775 * 180.30204 * 7 6 5 10 10 N 1.40104 * 119.99764 * 180.02562 * 9 7 6 11 11 C 1.34781 * 119.99952 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99845 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99704 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46788 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.12473 * 264.99769 * 14 13 11 16 16 C 1.38613 * 120.24781 * 179.97438 * 15 14 13 17 17 C 1.38657 * 120.49974 * 0.02562 * 16 15 14 18 18 C 1.37603 * 120.25138 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.12794 * 84.72567 * 14 13 11 20 20 C 1.41399 * 120.24453 * 359.97438 * 19 14 13 21 21 H 1.08004 * 119.99841 * 333.89140 * 20 19 14 22 22 C 1.39944 * 120.00240 * 153.89940 * 20 19 14 23 23 N 1.30824 * 119.99753 * 343.70721 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 163.70559 * 22 20 19 25 25 H 1.48499 * 109.46837 * 90.00221 * 24 22 20 26 26 H 1.48500 * 109.47297 * 209.99823 * 24 22 20 27 27 H 1.48501 * 109.46997 * 330.00383 * 24 22 20 28 28 N 1.31490 * 119.55069 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47061 * 89.99732 * 1 2 3 30 30 H 1.08997 * 109.47331 * 209.99877 * 1 2 3 31 31 H 1.09001 * 109.47467 * 330.00020 * 1 2 3 32 32 H 1.08002 * 120.32807 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.75559 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.46906 * 179.72183 * 5 4 3 35 35 H 0.96997 * 120.00398 * 359.97438 * 9 7 6 36 36 H 0.97000 * 119.99849 * 0.02562 * 10 9 7 37 37 H 1.09004 * 109.47239 * 300.00084 * 13 11 10 38 38 H 1.08997 * 109.47305 * 60.00578 * 13 11 10 39 39 H 1.08002 * 119.87703 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.75015 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.87871 * 179.97438 * 17 16 15 42 42 H 1.07994 * 120.12897 * 179.97438 * 18 17 16 43 43 H 0.97001 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.2057 0.0000 4 6 3.5763 1.2010 -0.0005 5 6 4.2333 -0.0197 -0.0069 6 6 3.4821 -1.1924 -0.0006 7 6 4.1692 -2.5051 -0.0012 8 8 5.3833 -2.5554 -0.0016 9 7 3.4475 -3.6434 -0.0013 10 7 4.0972 -4.8847 -0.0013 11 6 3.3756 -6.0230 -0.0009 12 8 2.1639 -5.9728 -0.0009 13 6 4.0745 -7.3581 -0.0003 14 6 3.0486 -8.4621 -0.0005 15 6 2.6539 -9.0386 1.1854 16 6 1.7101 -10.0538 1.1882 17 6 1.1536 -10.5005 -0.0006 18 6 1.5340 -9.9395 -1.1981 19 6 2.4864 -8.9035 -1.2124 20 6 2.8796 -8.3144 -2.4362 21 1 3.2541 -7.3015 -2.4522 22 6 2.7834 -9.0438 -3.6267 23 7 2.6418 -10.3437 -3.5877 24 14 2.8573 -8.1612 -5.2714 25 1 4.2685 -8.0796 -5.7264 26 1 2.0572 -8.9117 -6.2723 27 1 2.3050 -6.7907 -5.1229 28 7 2.1554 -1.1439 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6484 2.1399 -0.0004 33 1 4.1318 2.1272 -0.0001 34 1 5.3126 -0.0608 -0.0120 35 1 2.4784 -3.6033 -0.0005 36 1 5.0664 -4.9248 -0.0009 37 1 4.6983 -7.4421 -0.8903 38 1 4.6982 -7.4415 0.8897 39 1 3.0806 -8.6981 2.1173 40 1 1.4060 -10.5001 2.1234 41 1 0.4193 -11.2925 0.0132 42 1 1.0996 -10.2893 -2.1228 43 1 2.5747 -10.8493 -4.4128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794087811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:58 Heat of formation + Delta-G solvation = 12.384082 kcal Electronic energy + Delta-G solvation = -27774.160112 eV Core-core repulsion = 23785.096260 eV Total energy + Delta-G solvation = -3989.063852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98111 -39.77111 -38.66183 -37.31174 -35.10101 -33.62582 -33.36382 -33.09875 -31.98825 -30.55896 -29.44838 -28.10502 -26.79900 -25.17352 -24.66753 -22.59861 -21.36806 -21.16310 -20.91116 -19.51955 -18.16337 -17.67112 -17.14782 -16.69375 -16.32797 -15.81907 -15.69851 -15.39806 -14.83852 -14.80466 -14.52481 -14.27059 -14.12588 -13.68342 -13.49234 -13.31971 -13.28304 -12.70939 -12.58405 -12.57667 -12.32163 -11.78464 -11.57754 -11.40481 -11.11978 -10.98127 -10.88709 -10.74054 -10.63559 -10.39931 -10.32518 -9.90898 -9.49980 -9.46979 -9.37498 -9.36909 -9.15244 -8.13519 -7.32694 -7.30503 -6.74077 -4.35151 0.30162 0.83636 1.93985 2.42751 2.81165 3.02580 3.07871 3.13451 3.16921 3.27744 3.54428 3.56716 3.94603 4.13374 4.30974 4.57694 4.63576 4.67574 4.71965 5.01202 5.19426 5.23140 5.29488 5.37519 5.63261 5.70437 5.74891 5.75602 5.95115 6.03437 6.21112 6.28022 6.39518 6.50910 6.75453 6.80147 6.89123 7.08393 7.29114 7.41502 7.42807 7.63376 7.77774 7.92072 7.99331 8.06023 8.12966 8.30656 8.64096 8.73346 8.90819 9.00537 10.19873 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.002791 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.003261 B =10031.425924 C =10792.957870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.131 3.869 3 C -0.150 4.150 4 C -0.078 4.078 5 C -0.115 4.115 6 C 0.095 3.905 7 C 0.566 3.434 8 O -0.540 6.540 9 N -0.496 5.496 10 N -0.538 5.538 11 C 0.516 3.484 12 O -0.514 6.514 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.078 4.078 16 C -0.240 4.240 17 C -0.105 4.105 18 C -0.159 4.159 19 C 0.131 3.869 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.793 5.793 24 Si 0.902 3.098 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.262 1.262 28 N -0.460 5.460 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.441 0.559 36 H 0.428 0.572 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 20.307 4.813 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.010 4.010 3 C -0.170 4.170 4 C -0.103 4.103 5 C -0.136 4.136 6 C -0.044 4.044 7 C 0.350 3.650 8 O -0.417 6.417 9 N -0.241 5.241 10 N -0.290 5.290 11 C 0.304 3.696 12 O -0.386 6.386 13 C -0.099 4.099 14 C -0.188 4.188 15 C -0.096 4.096 16 C -0.259 4.259 17 C -0.124 4.124 18 C -0.178 4.178 19 C 0.128 3.872 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.419 5.419 24 Si 0.726 3.274 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.186 1.186 28 N -0.173 5.173 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.285 0.715 36 H 0.269 0.731 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.594 19.230 4.649 19.793 hybrid contribution 0.492 1.181 -0.848 1.535 sum 1.086 20.410 3.802 20.790 Atomic orbital electron populations 1.20781 0.88052 1.03977 1.03641 1.21355 0.97349 0.87729 0.94545 1.22226 0.95063 0.99484 1.00216 1.21631 0.94417 0.98270 0.96019 1.22074 1.02379 0.91511 0.97666 1.20773 0.89668 0.93121 1.00854 1.17857 0.86620 0.82285 0.78195 1.90794 1.12532 1.86607 1.51745 1.44680 1.10266 0.96690 1.72490 1.45543 1.09350 0.95122 1.78999 1.21877 0.88661 0.84048 0.75058 1.90713 1.13871 1.86529 1.47461 1.20215 0.98177 0.87777 1.03698 1.18977 1.03785 1.01990 0.94086 1.20313 0.97310 0.96573 0.95395 1.20310 1.05396 1.03937 0.96286 1.20693 0.99214 0.98984 0.93476 1.21301 0.99709 1.00349 0.96428 1.17335 0.88362 0.90166 0.91325 1.19475 1.38190 0.99999 0.90937 0.90792 1.25871 0.92382 0.94490 1.01238 1.69815 1.35395 1.06533 1.30112 0.86414 0.79085 0.80808 0.81092 1.19459 1.20036 1.18572 1.67414 1.08434 1.30490 1.10924 0.89934 0.89876 0.90421 0.84098 0.83808 0.83175 0.71522 0.73094 0.87856 0.89788 0.89608 0.89590 0.89529 0.86473 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.17 36.00 0.37 -0.37 16 2 C 0.13 1.23 6.78 -82.61 -0.56 0.67 16 3 C -0.15 -1.06 9.75 -39.32 -0.38 -1.44 16 4 C -0.08 -0.55 10.17 -39.31 -0.40 -0.95 16 5 C -0.12 -1.14 9.63 -39.05 -0.38 -1.52 16 6 C 0.10 1.21 6.75 -83.01 -0.56 0.65 16 7 C 0.57 8.47 7.93 -12.19 -0.10 8.38 16 8 O -0.54 -8.86 16.16 5.35 0.09 -8.77 16 9 N -0.50 -7.94 6.25 30.60 0.19 -7.75 16 10 N -0.54 -8.86 6.26 31.22 0.20 -8.67 16 11 C 0.52 10.10 7.56 -10.98 -0.08 10.01 16 12 O -0.51 -12.07 15.87 5.56 0.09 -11.98 16 13 C -0.06 -1.10 5.18 -29.03 -0.15 -1.25 16 14 C -0.19 -4.42 4.43 -103.91 -0.46 -4.88 16 15 C -0.08 -1.77 9.66 -39.66 -0.38 -2.15 16 16 C -0.24 -5.54 10.05 -39.29 -0.39 -5.93 16 17 C -0.11 -2.55 10.02 -39.66 -0.40 -2.94 16 18 C -0.16 -4.21 8.69 -38.87 -0.34 -4.55 16 19 C 0.13 3.46 5.56 -106.82 -0.59 2.87 16 20 C -0.46 -11.96 8.14 -37.74 -0.31 -12.26 16 21 H 0.07 1.89 6.67 -52.48 -0.35 1.54 16 22 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 23 N -0.79 -20.39 10.96 55.55 0.61 -19.79 16 24 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 28 N -0.46 -5.67 9.45 -6.06 -0.06 -5.73 16 29 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 34 H 0.15 1.37 7.64 -52.49 -0.40 0.97 16 35 H 0.44 7.22 7.33 -182.60 -1.34 5.89 16 36 H 0.43 6.13 8.00 -182.59 -1.46 4.67 16 37 H 0.10 1.93 7.08 -51.93 -0.37 1.56 16 38 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.12 3.20 6.20 -52.49 -0.33 2.87 16 43 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.63 375.41 -10.64 -43.28 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -7.18 Total: 13.57 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -5.21 Total: -13.81 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.94 Total: -41.93 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.17 Total: -20.75 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.63 -10.64 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794087811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.661 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds